File: DW1.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (385 lines) | stat: -rw-r--r-- 17,547 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
DW1      DW1 'Ruthenium pyridocarbazole           ' non-polymer        44  31 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_DW1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 DW1           O9     O    O         0.000     -4.997    2.593   -0.613
 DW1           C1     C    CR5       0.000     -4.511    1.489   -0.435
 DW1           N19    N    NR15      0.000     -5.195    0.334   -0.456
 DW1           HN19   H    H         0.000     -6.216    0.256   -0.636
 DW1           C30    C    CR5       0.000     -4.379   -0.709   -0.213
 DW1           O8     O    O         0.000     -4.706   -1.882   -0.174
 DW1           C29    C    CR56      0.000     -3.031   -0.182   -0.004
 DW1           C28    C    CR56      0.000     -1.790   -0.749    0.305
 DW1           C27    C    CR56      0.000     -1.085   -2.030    0.391
 DW1           C26    C    CR16      0.000     -1.472   -3.316    0.038
 DW1           H26    H    H         0.000     -2.502   -3.549   -0.202
 DW1           C25    C    CR6       0.000     -0.481   -4.292    0.005
 DW1           O15    O    OH1       0.000     -0.809   -5.568   -0.328
 DW1           HO15   H    H         0.000     -0.016   -6.120   -0.305
 DW1           C24    C    CR16      0.000      0.836   -3.984    0.307
 DW1           H24    H    H         0.000      1.586   -4.762    0.234
 DW1           C23    C    CR16      0.000      1.224   -2.713    0.699
 DW1           H23    H    H         0.000      2.260   -2.492    0.924
 DW1           C22    C    CR56      0.000      0.248   -1.731    0.795
 DW1           C2     C    CR56      0.000     -3.146    1.236   -0.178
 DW1           C3     C    CR66      0.000     -1.962    2.071   -0.073
 DW1           C4     C    CR16      0.000     -1.838    3.437   -0.317
 DW1           H4     H    H         0.000     -2.717    4.015   -0.574
 DW1           C5     C    CR16      0.000     -0.599    4.072   -0.235
 DW1           H5     H    H         0.000     -0.554    5.141   -0.403
 DW1           C6     C    CR16      0.000      0.575    3.400    0.051
 DW1           H6     H    H         0.000      1.520    3.924    0.129
 DW1           C7     C    CR66      0.000     -0.736    1.419    0.292
 DW1           N20    N    NR6       0.000      0.497    2.100    0.224
 DW1           C21    C    CR56      0.000     -0.779    0.125    0.664
 DW1           N18    N    NT        0.000      0.304   -0.597    1.208
 DW1           RU     RU   RU        0.000      1.681    0.562    0.410
 DW1           C10    C    CSP       0.000      3.188    0.916    1.661
 DW1           O11    O    O         0.000      3.963    2.014    1.176
 DW1           C13    C    CH1       0.000      2.320   -0.117   -1.347
 DW1           H13    H    H         0.000      1.467   -0.340   -2.003
 DW1           C14    C    CR15      0.000      3.172   -1.352   -1.155
 DW1           H14    H    H         0.000      2.859   -2.290   -0.714
 DW1           C16    C    CR15      0.000      4.378   -1.065   -1.631
 DW1           H16    H    H         0.000      5.217   -1.749   -1.637
 DW1           C17    C    CR15      0.000      4.416    0.306   -2.147
 DW1           H17    H    H         0.000      5.288    0.775   -2.587
 DW1           C12    C    CR15      0.000      3.235    0.894   -2.001
 DW1           H12    H    H         0.000      2.976    1.904   -2.294
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 DW1      O9     n/a    C1     START
 DW1      C1     O9     C2     .
 DW1      N19    C1     C30    .
 DW1      HN19   N19    .      .
 DW1      C30    N19    C29    .
 DW1      O8     C30    .      .
 DW1      C29    C30    C28    .
 DW1      C28    C29    C27    .
 DW1      C27    C28    C26    .
 DW1      C26    C27    C25    .
 DW1      H26    C26    .      .
 DW1      C25    C26    C24    .
 DW1      O15    C25    HO15   .
 DW1      HO15   O15    .      .
 DW1      C24    C25    C23    .
 DW1      H24    C24    .      .
 DW1      C23    C24    C22    .
 DW1      H23    C23    .      .
 DW1      C22    C23    .      .
 DW1      C2     C1     C3     .
 DW1      C3     C2     C7     .
 DW1      C4     C3     C5     .
 DW1      H4     C4     .      .
 DW1      C5     C4     C6     .
 DW1      H5     C5     .      .
 DW1      C6     C5     H6     .
 DW1      H6     C6     .      .
 DW1      C7     C3     C21    .
 DW1      N20    C7     .      .
 DW1      C21    C7     N18    .
 DW1      N18    C21    RU     .
 DW1      RU     N18    C13    .
 DW1      C10    RU     O11    .
 DW1      O11    C10    .      .
 DW1      C13    RU     C14    .
 DW1      H13    C13    .      .
 DW1      C14    C13    C16    .
 DW1      H14    C14    .      .
 DW1      C16    C14    C17    .
 DW1      H16    C16    .      .
 DW1      C17    C16    C12    .
 DW1      H17    C17    .      .
 DW1      C12    C17    H12    .
 DW1      H12    C12    .      END
 DW1      RU     N20    .    ADD
 DW1      C12    C13    .    ADD
 DW1      N20    C6     .    ADD
 DW1      N18    C22    .    ADD
 DW1      C22    C27    .    ADD
 DW1      C28    C21    .    ADD
 DW1      C29    C2     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 DW1      O11    C10       triple      1.130    0.020
 DW1      C10    RU        single      1.990    0.020
 DW1      C13    RU        single      1.989    0.020
 DW1      RU     N20       single      1.950    0.020
 DW1      RU     N18       single      1.969    0.020
 DW1      C12    C13       single      1.510    0.020
 DW1      C12    C17       double      1.380    0.020
 DW1      H12    C12       single      1.083    0.020
 DW1      C14    C13       single      1.510    0.020
 DW1      H13    C13       single      1.099    0.020
 DW1      C16    C14       double      1.380    0.020
 DW1      H14    C14       single      1.083    0.020
 DW1      C17    C16       single      1.380    0.020
 DW1      H16    C16       single      1.083    0.020
 DW1      H17    C17       single      1.083    0.020
 DW1      N20    C6        single      1.337    0.020
 DW1      N20    C7        single      1.410    0.020
 DW1      C6     C5        double      1.390    0.020
 DW1      H6     C6        single      1.083    0.020
 DW1      C5     C4        single      1.390    0.020
 DW1      H5     C5        single      1.083    0.020
 DW1      C4     C3        double      1.390    0.020
 DW1      H4     C4        single      1.083    0.020
 DW1      N18    C22       double      1.405    0.020
 DW1      N18    C21       single      1.405    0.020
 DW1      C22    C23       single      1.390    0.020
 DW1      C22    C27       single      1.490    0.020
 DW1      C26    C27       single      1.390    0.020
 DW1      C27    C28       double      1.490    0.020
 DW1      C25    C26       double      1.390    0.020
 DW1      H26    C26       single      1.083    0.020
 DW1      C24    C25       single      1.390    0.020
 DW1      O15    C25       single      1.362    0.020
 DW1      C23    C24       double      1.390    0.020
 DW1      H24    C24       single      1.083    0.020
 DW1      H23    C23       single      1.083    0.020
 DW1      HO15   O15       single      0.967    0.020
 DW1      C28    C21       single      1.490    0.020
 DW1      C28    C29       single      1.490    0.020
 DW1      C21    C7        double      1.390    0.020
 DW1      C7     C3        single      1.490    0.020
 DW1      C3     C2        single      1.390    0.020
 DW1      C29    C2        double      1.490    0.020
 DW1      C29    C30       single      1.490    0.020
 DW1      C2     C1        single      1.490    0.020
 DW1      O8     C30       double      1.285    0.020
 DW1      C30    N19       single      1.340    0.020
 DW1      N19    C1        single      1.340    0.020
 DW1      HN19   N19       single      1.040    0.020
 DW1      C1     O9        double      1.285    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 DW1      O9     C1     N19     108.000    3.000
 DW1      O9     C1     C2      108.000    3.000
 DW1      N19    C1     C2      108.000    3.000
 DW1      C1     N19    HN19    126.000    3.000
 DW1      C1     N19    C30     108.000    3.000
 DW1      HN19   N19    C30     126.000    3.000
 DW1      N19    C30    O8      108.000    3.000
 DW1      N19    C30    C29     108.000    3.000
 DW1      O8     C30    C29     108.000    3.000
 DW1      C30    C29    C28     108.000    3.000
 DW1      C30    C29    C2      108.000    3.000
 DW1      C28    C29    C2      120.000    3.000
 DW1      C29    C28    C27     120.000    3.000
 DW1      C29    C28    C21     120.000    3.000
 DW1      C27    C28    C21     120.000    3.000
 DW1      C28    C27    C26     120.000    3.000
 DW1      C28    C27    C22     120.000    3.000
 DW1      C26    C27    C22     120.000    3.000
 DW1      C27    C26    H26     120.000    3.000
 DW1      C27    C26    C25     120.000    3.000
 DW1      H26    C26    C25     120.000    3.000
 DW1      C26    C25    O15     120.000    3.000
 DW1      C26    C25    C24     120.000    3.000
 DW1      O15    C25    C24     120.000    3.000
 DW1      C25    O15    HO15    109.470    3.000
 DW1      C25    C24    H24     120.000    3.000
 DW1      C25    C24    C23     120.000    3.000
 DW1      H24    C24    C23     120.000    3.000
 DW1      C24    C23    H23     120.000    3.000
 DW1      C24    C23    C22     120.000    3.000
 DW1      H23    C23    C22     120.000    3.000
 DW1      C23    C22    N18     120.000    3.000
 DW1      C23    C22    C27     120.000    3.000
 DW1      N18    C22    C27     120.000    3.000
 DW1      C1     C2     C3      120.000    3.000
 DW1      C1     C2     C29     108.000    3.000
 DW1      C3     C2     C29     120.000    3.000
 DW1      C2     C3     C4      120.000    3.000
 DW1      C2     C3     C7      120.000    3.000
 DW1      C4     C3     C7      120.000    3.000
 DW1      C3     C4     H4      120.000    3.000
 DW1      C3     C4     C5      120.000    3.000
 DW1      H4     C4     C5      120.000    3.000
 DW1      C4     C5     H5      120.000    3.000
 DW1      C4     C5     C6      120.000    3.000
 DW1      H5     C5     C6      120.000    3.000
 DW1      C5     C6     H6      120.000    3.000
 DW1      C5     C6     N20     120.000    3.000
 DW1      H6     C6     N20     120.000    3.000
 DW1      C3     C7     N20     120.000    3.000
 DW1      C3     C7     C21     120.000    3.000
 DW1      N20    C7     C21     120.000    3.000
 DW1      C7     N20    RU      120.000    3.000
 DW1      C7     N20    C6      120.000    3.000
 DW1      RU     N20    C6      120.000    3.000
 DW1      C7     C21    N18     120.000    3.000
 DW1      C7     C21    C28     120.000    3.000
 DW1      N18    C21    C28     120.000    3.000
 DW1      C21    N18    RU      109.500    3.000
 DW1      C21    N18    C22     109.500    3.000
 DW1      RU     N18    C22     109.500    3.000
 DW1      N18    RU     C10     112.303    3.000
 DW1      N18    RU     C13     112.443    3.000
 DW1      N18    RU     N20      94.491    3.000
 DW1      C10    RU     C13     111.881    3.000
 DW1      C10    RU     N20     112.299    3.000
 DW1      C13    RU     N20     112.338    3.000
 DW1      RU     C10    O11     180.000    3.000
 DW1      RU     C13    H13     109.500    3.000
 DW1      RU     C13    C14     109.500    3.000
 DW1      RU     C13    C12     109.500    3.000
 DW1      H13    C13    C14     109.500    3.000
 DW1      H13    C13    C12     109.500    3.000
 DW1      C14    C13    C12     109.500    3.000
 DW1      C13    C14    H14     108.000    3.000
 DW1      C13    C14    C16     108.000    3.000
 DW1      H14    C14    C16     126.000    3.000
 DW1      C14    C16    H16     126.000    3.000
 DW1      C14    C16    C17     108.000    3.000
 DW1      H16    C16    C17     126.000    3.000
 DW1      C16    C17    H17     126.000    3.000
 DW1      C16    C17    C12     108.000    3.000
 DW1      H17    C17    C12     126.000    3.000
 DW1      C17    C12    H12     126.000    3.000
 DW1      C17    C12    C13     108.000    3.000
 DW1      H12    C12    C13     108.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 DW1      CONST_1  O9     C1     N19    C30      180.000    0.000   0
 DW1      CONST_2  C1     N19    C30    C29        0.000    0.000   0
 DW1      CONST_3  N19    C30    C29    C28      180.000    0.000   0
 DW1      CONST_4  C30    C29    C2     C1         0.000    0.000   0
 DW1      CONST_5  C30    C29    C28    C27        0.000    0.000   0
 DW1      CONST_6  C29    C28    C21    C7         0.000    0.000   0
 DW1      CONST_7  C29    C28    C27    C26        0.000    0.000   0
 DW1      CONST_8  C28    C27    C26    C25      180.000    0.000   0
 DW1      CONST_9  C27    C26    C25    C24        0.000    0.000   0
 DW1      var_1    C26    C25    O15    HO15     179.995   20.000   1
 DW1      CONST_10 C26    C25    C24    C23        0.000    0.000   0
 DW1      CONST_11 C25    C24    C23    C22        0.000    0.000   0
 DW1      CONST_12 C24    C23    C22    N18      180.000    0.000   0
 DW1      CONST_13 C23    C22    C27    C28      180.000    0.000   0
 DW1      CONST_14 O9     C1     C2     C3         0.000    0.000   0
 DW1      CONST_15 C1     C2     C3     C7       176.193    0.000   0
 DW1      CONST_16 C2     C3     C4     C5       180.000    0.000   0
 DW1      CONST_17 C3     C4     C5     C6         0.000    0.000   0
 DW1      CONST_18 C4     C5     C6     N20        0.000    0.000   0
 DW1      CONST_19 C2     C3     C7     C21       -7.618    0.000   0
 DW1      CONST_20 C3     C7     N20    RU       180.000    0.000   0
 DW1      CONST_21 C7     N20    C6     C5         0.000    0.000   0
 DW1      CONST_22 C3     C7     C21    N18     -171.533    0.000   0
 DW1      CONST_23 C7     C21    N18    RU       -24.122    0.000   0
 DW1      CONST_24 C21    N18    C22    C23      159.095    0.000   0
 DW1      var_2    C21    N18    RU     C13      -93.137   20.000   1
 DW1      CONST_25 N18    RU     N20    C7       -20.020    0.000   0
 DW1      var_3    N18    RU     C10    O11     -165.062   20.000   1
 DW1      var_4    N18    RU     C13    C14      -71.791   20.000   1
 DW1      CONST_26 RU     C13    C14    C16        0.000    0.000   0
 DW1      CONST_27 C13    C14    C16    C17       -0.022    0.000   0
 DW1      CONST_28 C14    C16    C17    C12       -0.019    0.000   0
 DW1      CONST_29 C16    C17    C12    C13        0.050    0.000   0
 DW1      CONST_30 C17    C12    C13    RU         0.000    0.000   0
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 DW1      chir_01  C13    RU     C12    C14       negativ
 DW1      chir_02  N18    RU     C22    C21       positiv
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 DW1      plan-1    C12       0.020
 DW1      plan-1    C13       0.020
 DW1      plan-1    C17       0.020
 DW1      plan-1    H12       0.020
 DW1      plan-1    C14       0.020
 DW1      plan-1    C16       0.020
 DW1      plan-1    H14       0.020
 DW1      plan-1    H16       0.020
 DW1      plan-1    H17       0.020
 DW1      plan-2    N20       0.020
 DW1      plan-2    RU        0.020
 DW1      plan-2    C6        0.020
 DW1      plan-2    C7        0.020
 DW1      plan-2    C5        0.020
 DW1      plan-2    C4        0.020
 DW1      plan-2    H6        0.020
 DW1      plan-2    H5        0.020
 DW1      plan-2    C3        0.020
 DW1      plan-2    H4        0.020
 DW1      plan-2    C28       0.020
 DW1      plan-2    C27       0.020
 DW1      plan-2    C21       0.020
 DW1      plan-2    C29       0.020
 DW1      plan-2    N18       0.020
 DW1      plan-2    C2        0.020
 DW1      plan-2    C30       0.020
 DW1      plan-2    N19       0.020
 DW1      plan-2    C1        0.020
 DW1      plan-2    O8        0.020
 DW1      plan-2    HN19      0.020
 DW1      plan-2    O9        0.020
 DW1      plan-2    C22       0.020
 DW1      plan-2    C26       0.020
 DW1      plan-2    C25       0.020
 DW1      plan-2    C24       0.020
 DW1      plan-2    C23       0.020
 DW1      plan-2    H26       0.020
 DW1      plan-2    O15       0.020
 DW1      plan-2    H24       0.020
 DW1      plan-2    H23       0.020
# ------------------------------------------------------