File: GLE.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (371 lines) | stat: -rw-r--r-- 17,437 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
GLE      GLE '1-DECYL-3-TRIFLUORO ETHYL-SN-GLYCERO' non-polymer        57  26 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_GLE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 GLE           O22    O    OP       -0.500      0.000    0.000    0.000
 GLE           P2     P    P         0.000     -1.339   -0.554   -0.315
 GLE           O21    O    OP       -0.500     -2.249    0.549   -0.711
 GLE           O23    O    O2        0.000     -1.212   -1.605   -1.527
 GLE           C2P    C    CH3       0.000     -0.684   -0.888   -2.644
 GLE           H2P3   H    H         0.000     -1.342   -0.098   -2.899
 GLE           H2P2   H    H         0.000      0.264   -0.489   -2.392
 GLE           H2P1   H    H         0.000     -0.583   -1.544   -3.469
 GLE           O2     O    O2        0.000     -1.931   -1.298    0.983
 GLE           C2     C    CH1       0.000     -2.019   -0.318    2.018
 GLE           H2     H    H         0.000     -1.663    0.649    1.636
 GLE           C3     C    CH2       0.000     -1.154   -0.747    3.204
 GLE           H31    H    H         0.000     -1.509   -1.707    3.584
 GLE           H32    H    H         0.000     -1.222    0.004    3.994
 GLE           O3     O    O2        0.000      0.206   -0.874    2.782
 GLE           C31    C    CH2       0.000      0.959   -1.275    3.927
 GLE           H311   H    H         0.000      0.577   -2.229    4.298
 GLE           H312   H    H         0.000      0.864   -0.518    4.708
 GLE           C32    C    CT        0.000      2.431   -1.430    3.541
 GLE           F33    F    F         0.000      2.919   -0.208    3.068
 GLE           F32    F    F         0.000      2.553   -2.398    2.539
 GLE           F31    F    F         0.000      3.169   -1.823    4.662
 GLE           C1     C    CH2       0.000     -3.474   -0.181    2.470
 GLE           H11    H    H         0.000     -3.540    0.569    3.261
 GLE           H12    H    H         0.000     -3.828   -1.142    2.851
 GLE           O1     O    O2        0.000     -4.282    0.220    1.363
 GLE           C11    C    CH2       0.000     -5.621    0.328    1.846
 GLE           H111   H    H         0.000     -5.660    1.071    2.645
 GLE           H112   H    H         0.000     -5.947   -0.639    2.234
 GLE           C12    C    CH2       0.000     -6.544    0.757    0.703
 GLE           H121   H    H         0.000     -6.503    0.014   -0.096
 GLE           H122   H    H         0.000     -6.216    1.724    0.315
 GLE           C13    C    CH2       0.000     -7.979    0.873    1.221
 GLE           H131   H    H         0.000     -8.017    1.617    2.020
 GLE           H132   H    H         0.000     -8.304   -0.094    1.609
 GLE           C14    C    CH2       0.000     -8.900    1.302    0.078
 GLE           H141   H    H         0.000     -8.859    0.558   -0.720
 GLE           H142   H    H         0.000     -8.572    2.269   -0.310
 GLE           C15    C    CH2       0.000    -10.335    1.419    0.596
 GLE           H151   H    H         0.000    -10.372    2.163    1.395
 GLE           H152   H    H         0.000    -10.660    0.452    0.985
 GLE           C16    C    CH2       0.000    -11.257    1.849   -0.546
 GLE           H161   H    H         0.000    -11.216    1.105   -1.344
 GLE           H162   H    H         0.000    -10.929    2.815   -0.933
 GLE           C17    C    CH2       0.000    -12.692    1.965   -0.028
 GLE           H171   H    H         0.000    -12.730    2.708    0.771
 GLE           H172   H    H         0.000    -13.017    0.997    0.360
 GLE           C18    C    CH2       0.000    -13.614    2.394   -1.170
 GLE           H181   H    H         0.000    -13.573    1.650   -1.969
 GLE           H182   H    H         0.000    -13.287    3.361   -1.558
 GLE           C19    C    CH2       0.000    -15.048    2.510   -0.653
 GLE           H191   H    H         0.000    -15.087    3.253    0.146
 GLE           H192   H    H         0.000    -15.373    1.542   -0.265
 GLE           C20    C    CH3       0.000    -15.971    2.939   -1.795
 GLE           H203   H    H         0.000    -15.656    3.878   -2.174
 GLE           H202   H    H         0.000    -15.936    2.218   -2.572
 GLE           H201   H    H         0.000    -16.966    3.021   -1.438
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 GLE      O22    n/a    P2     START
 GLE      P2     O22    O2     .
 GLE      O21    P2     .      .
 GLE      O23    P2     C2P    .
 GLE      C2P    O23    H2P1   .
 GLE      H2P3   C2P    .      .
 GLE      H2P2   C2P    .      .
 GLE      H2P1   C2P    .      .
 GLE      O2     P2     C2     .
 GLE      C2     O2     C1     .
 GLE      H2     C2     .      .
 GLE      C3     C2     O3     .
 GLE      H31    C3     .      .
 GLE      H32    C3     .      .
 GLE      O3     C3     C31    .
 GLE      C31    O3     C32    .
 GLE      H311   C31    .      .
 GLE      H312   C31    .      .
 GLE      C32    C31    F31    .
 GLE      F33    C32    .      .
 GLE      F32    C32    .      .
 GLE      F31    C32    .      .
 GLE      C1     C2     O1     .
 GLE      H11    C1     .      .
 GLE      H12    C1     .      .
 GLE      O1     C1     C11    .
 GLE      C11    O1     C12    .
 GLE      H111   C11    .      .
 GLE      H112   C11    .      .
 GLE      C12    C11    C13    .
 GLE      H121   C12    .      .
 GLE      H122   C12    .      .
 GLE      C13    C12    C14    .
 GLE      H131   C13    .      .
 GLE      H132   C13    .      .
 GLE      C14    C13    C15    .
 GLE      H141   C14    .      .
 GLE      H142   C14    .      .
 GLE      C15    C14    C16    .
 GLE      H151   C15    .      .
 GLE      H152   C15    .      .
 GLE      C16    C15    C17    .
 GLE      H161   C16    .      .
 GLE      H162   C16    .      .
 GLE      C17    C16    C18    .
 GLE      H171   C17    .      .
 GLE      H172   C17    .      .
 GLE      C18    C17    C19    .
 GLE      H181   C18    .      .
 GLE      H182   C18    .      .
 GLE      C19    C18    C20    .
 GLE      H191   C19    .      .
 GLE      H192   C19    .      .
 GLE      C20    C19    H201   .
 GLE      H203   C20    .      .
 GLE      H202   C20    .      .
 GLE      H201   C20    .      END
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 GLE      O1     C1        single      1.426    0.020
 GLE      C1     C2        single      1.524    0.020
 GLE      H11    C1        single      1.092    0.020
 GLE      H12    C1        single      1.092    0.020
 GLE      C11    O1        single      1.426    0.020
 GLE      C2     O2        single      1.426    0.020
 GLE      C3     C2        single      1.524    0.020
 GLE      H2     C2        single      1.099    0.020
 GLE      O2     P2        single      1.610    0.020
 GLE      O3     C3        single      1.426    0.020
 GLE      H31    C3        single      1.092    0.020
 GLE      H32    C3        single      1.092    0.020
 GLE      C31    O3        single      1.426    0.020
 GLE      C32    C31       single      1.524    0.020
 GLE      H311   C31       single      1.092    0.020
 GLE      H312   C31       single      1.092    0.020
 GLE      F31    C32       single      1.320    0.020
 GLE      F32    C32       single      1.320    0.020
 GLE      F33    C32       single      1.320    0.020
 GLE      O21    P2        deloc       1.510    0.020
 GLE      P2     O22       deloc       1.510    0.020
 GLE      O23    P2        single      1.610    0.020
 GLE      C2P    O23       single      1.426    0.020
 GLE      H2P1   C2P       single      1.059    0.020
 GLE      H2P2   C2P       single      1.059    0.020
 GLE      H2P3   C2P       single      1.059    0.020
 GLE      C12    C11       single      1.524    0.020
 GLE      H111   C11       single      1.092    0.020
 GLE      H112   C11       single      1.092    0.020
 GLE      C13    C12       single      1.524    0.020
 GLE      H121   C12       single      1.092    0.020
 GLE      H122   C12       single      1.092    0.020
 GLE      C14    C13       single      1.524    0.020
 GLE      H131   C13       single      1.092    0.020
 GLE      H132   C13       single      1.092    0.020
 GLE      C15    C14       single      1.524    0.020
 GLE      H141   C14       single      1.092    0.020
 GLE      H142   C14       single      1.092    0.020
 GLE      C16    C15       single      1.524    0.020
 GLE      H151   C15       single      1.092    0.020
 GLE      H152   C15       single      1.092    0.020
 GLE      C17    C16       single      1.524    0.020
 GLE      H161   C16       single      1.092    0.020
 GLE      H162   C16       single      1.092    0.020
 GLE      C18    C17       single      1.524    0.020
 GLE      H171   C17       single      1.092    0.020
 GLE      H172   C17       single      1.092    0.020
 GLE      C19    C18       single      1.524    0.020
 GLE      H181   C18       single      1.092    0.020
 GLE      H182   C18       single      1.092    0.020
 GLE      C20    C19       single      1.513    0.020
 GLE      H191   C19       single      1.092    0.020
 GLE      H192   C19       single      1.092    0.020
 GLE      H201   C20       single      1.059    0.020
 GLE      H202   C20       single      1.059    0.020
 GLE      H203   C20       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 GLE      O22    P2     O21     119.900    3.000
 GLE      O22    P2     O23     108.200    3.000
 GLE      O22    P2     O2      108.200    3.000
 GLE      O21    P2     O23     108.200    3.000
 GLE      O21    P2     O2      108.200    3.000
 GLE      O23    P2     O2      102.600    3.000
 GLE      P2     O23    C2P     120.000    3.000
 GLE      O23    C2P    H2P3    109.470    3.000
 GLE      O23    C2P    H2P2    109.470    3.000
 GLE      O23    C2P    H2P1    109.470    3.000
 GLE      H2P3   C2P    H2P2    109.470    3.000
 GLE      H2P3   C2P    H2P1    109.470    3.000
 GLE      H2P2   C2P    H2P1    109.470    3.000
 GLE      P2     O2     C2      120.500    3.000
 GLE      O2     C2     H2      109.470    3.000
 GLE      O2     C2     C3      109.470    3.000
 GLE      O2     C2     C1      109.470    3.000
 GLE      H2     C2     C3      108.340    3.000
 GLE      H2     C2     C1      108.340    3.000
 GLE      C3     C2     C1      109.470    3.000
 GLE      C2     C3     H31     109.470    3.000
 GLE      C2     C3     H32     109.470    3.000
 GLE      C2     C3     O3      109.470    3.000
 GLE      H31    C3     H32     107.900    3.000
 GLE      H31    C3     O3      109.470    3.000
 GLE      H32    C3     O3      109.470    3.000
 GLE      C3     O3     C31     111.800    3.000
 GLE      O3     C31    H311    109.470    3.000
 GLE      O3     C31    H312    109.470    3.000
 GLE      O3     C31    C32     109.500    3.000
 GLE      H311   C31    H312    107.900    3.000
 GLE      H311   C31    C32     109.470    3.000
 GLE      H312   C31    C32     109.470    3.000
 GLE      C31    C32    F33     109.470    3.000
 GLE      C31    C32    F32     109.470    3.000
 GLE      C31    C32    F31     109.470    3.000
 GLE      F33    C32    F32     109.470    3.000
 GLE      F33    C32    F31     109.470    3.000
 GLE      F32    C32    F31     109.470    3.000
 GLE      C2     C1     H11     109.470    3.000
 GLE      C2     C1     H12     109.470    3.000
 GLE      C2     C1     O1      109.470    3.000
 GLE      H11    C1     H12     107.900    3.000
 GLE      H11    C1     O1      109.470    3.000
 GLE      H12    C1     O1      109.470    3.000
 GLE      C1     O1     C11     111.800    3.000
 GLE      O1     C11    H111    109.470    3.000
 GLE      O1     C11    H112    109.470    3.000
 GLE      O1     C11    C12     109.470    3.000
 GLE      H111   C11    H112    107.900    3.000
 GLE      H111   C11    C12     109.470    3.000
 GLE      H112   C11    C12     109.470    3.000
 GLE      C11    C12    H121    109.470    3.000
 GLE      C11    C12    H122    109.470    3.000
 GLE      C11    C12    C13     111.000    3.000
 GLE      H121   C12    H122    107.900    3.000
 GLE      H121   C12    C13     109.470    3.000
 GLE      H122   C12    C13     109.470    3.000
 GLE      C12    C13    H131    109.470    3.000
 GLE      C12    C13    H132    109.470    3.000
 GLE      C12    C13    C14     111.000    3.000
 GLE      H131   C13    H132    107.900    3.000
 GLE      H131   C13    C14     109.470    3.000
 GLE      H132   C13    C14     109.470    3.000
 GLE      C13    C14    H141    109.470    3.000
 GLE      C13    C14    H142    109.470    3.000
 GLE      C13    C14    C15     111.000    3.000
 GLE      H141   C14    H142    107.900    3.000
 GLE      H141   C14    C15     109.470    3.000
 GLE      H142   C14    C15     109.470    3.000
 GLE      C14    C15    H151    109.470    3.000
 GLE      C14    C15    H152    109.470    3.000
 GLE      C14    C15    C16     111.000    3.000
 GLE      H151   C15    H152    107.900    3.000
 GLE      H151   C15    C16     109.470    3.000
 GLE      H152   C15    C16     109.470    3.000
 GLE      C15    C16    H161    109.470    3.000
 GLE      C15    C16    H162    109.470    3.000
 GLE      C15    C16    C17     111.000    3.000
 GLE      H161   C16    H162    107.900    3.000
 GLE      H161   C16    C17     109.470    3.000
 GLE      H162   C16    C17     109.470    3.000
 GLE      C16    C17    H171    109.470    3.000
 GLE      C16    C17    H172    109.470    3.000
 GLE      C16    C17    C18     111.000    3.000
 GLE      H171   C17    H172    107.900    3.000
 GLE      H171   C17    C18     109.470    3.000
 GLE      H172   C17    C18     109.470    3.000
 GLE      C17    C18    H181    109.470    3.000
 GLE      C17    C18    H182    109.470    3.000
 GLE      C17    C18    C19     111.000    3.000
 GLE      H181   C18    H182    107.900    3.000
 GLE      H181   C18    C19     109.470    3.000
 GLE      H182   C18    C19     109.470    3.000
 GLE      C18    C19    H191    109.470    3.000
 GLE      C18    C19    H192    109.470    3.000
 GLE      C18    C19    C20     111.000    3.000
 GLE      H191   C19    H192    107.900    3.000
 GLE      H191   C19    C20     109.470    3.000
 GLE      H192   C19    C20     109.470    3.000
 GLE      C19    C20    H203    109.470    3.000
 GLE      C19    C20    H202    109.470    3.000
 GLE      C19    C20    H201    109.470    3.000
 GLE      H203   C20    H202    109.470    3.000
 GLE      H203   C20    H201    109.470    3.000
 GLE      H202   C20    H201    109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 GLE      var_1    O22    P2     O23    C2P      -59.997   20.000   1
 GLE      var_2    P2     O23    C2P    H2P1    -179.979   20.000   1
 GLE      var_3    O22    P2     O2     C2        59.977   20.000   1
 GLE      var_4    P2     O2     C2     C1       119.951   20.000   1
 GLE      var_5    O2     C2     C3     O3        59.909   20.000   3
 GLE      var_6    C2     C3     O3     C31     -179.985   20.000   1
 GLE      var_7    C3     O3     C31    C32     -179.984   20.000   1
 GLE      var_8    O3     C31    C32    F31     -179.966   20.000   1
 GLE      var_9    O2     C2     C1     O1       -59.910   20.000   3
 GLE      var_10   C2     C1     O1     C11      179.957   20.000   1
 GLE      var_11   C1     O1     C11    C12     -179.996   20.000   1
 GLE      var_12   O1     C11    C12    C13     -179.989   20.000   3
 GLE      var_13   C11    C12    C13    C14     -179.999   20.000   3
 GLE      var_14   C12    C13    C14    C15     -179.961   20.000   3
 GLE      var_15   C13    C14    C15    C16      179.990   20.000   3
 GLE      var_16   C14    C15    C16    C17      179.952   20.000   3
 GLE      var_17   C15    C16    C17    C18      180.000   20.000   3
 GLE      var_18   C16    C17    C18    C19      179.999   20.000   3
 GLE      var_19   C17    C18    C19    C20      180.000   20.000   3
 GLE      var_20   C18    C19    C20    H201    -179.943   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 GLE      chir_01  C2     C1     O2     C3        positiv
 GLE      chir_02  C32    C31    F31    F32       negativ
# ------------------------------------------------------