File: GLG.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (235 lines) | stat: -rw-r--r-- 10,035 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
GLG      GLG 'ALPHA-D-GLUCOPYRANOSYL-2-CARBOXYLIC ' pyranose           27  14 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_GLG
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 GLG           C1     C    CH1       0.000      0.000    0.000    0.000
 GLG           H1     H    H         0.000      0.855   -0.041    0.689
 GLG           C7     C    C         0.000     -1.137    0.738    0.657
 GLG           N      N    NH2       0.000     -2.127    0.053    1.261
 GLG           HN2    H    H         0.000     -2.111   -0.959    1.277
 GLG           HN1    H    H         0.000     -2.893    0.546    1.704
 GLG           O7     O    O         0.000     -1.161    1.951    0.641
 GLG           O5     O    O2        0.000     -0.417   -1.326   -0.317
 GLG           C5     C    CH1       0.000     -1.629   -1.230   -1.062
 GLG           H5     H    H         0.000     -2.348   -0.607   -0.511
 GLG           C6     C    CH2       0.000     -2.214   -2.629   -1.261
 GLG           H61    H    H         0.000     -1.499   -3.248   -1.807
 GLG           H62    H    H         0.000     -3.142   -2.557   -1.834
 GLG           O6     O    OH1       0.000     -2.483   -3.220    0.011
 GLG           HO6    H    H         0.000     -2.853   -4.104   -0.117
 GLG           C4     C    CH1       0.000     -1.348   -0.599   -2.427
 GLG           H4     H    H         0.000     -0.611   -1.207   -2.970
 GLG           O4     O    OH1       0.000     -2.561   -0.531   -3.180
 GLG           HO4    H    H         0.000     -2.382   -0.131   -4.042
 GLG           C3     C    CH1       0.000     -0.793    0.814   -2.218
 GLG           H3     H    H         0.000     -1.568    1.452   -1.769
 GLG           O3     O    OH1       0.000     -0.390    1.361   -3.475
 GLG           HO3    H    H         0.000     -0.040    2.252   -3.340
 GLG           C2     C    CH1       0.000      0.412    0.732   -1.277
 GLG           H2     H    H         0.000      1.226    0.182   -1.770
 GLG           O2     O    OH1       0.000      0.855    2.051   -0.953
 GLG           HO2    H    H         0.000      1.616    1.998   -0.360
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 GLG      C1     n/a    O5     START
 GLG      H1     C1     .      .
 GLG      C7     C1     O7     .
 GLG      N      C7     HN1    .
 GLG      HN2    N      .      .
 GLG      HN1    N      .      .
 GLG      O7     C7     .      .
 GLG      O5     C1     .      END
 GLG      C5     O5     C4     .
 GLG      H5     C5     .      .
 GLG      C6     C5     O6     .
 GLG      H61    C6     .      .
 GLG      H62    C6     .      .
 GLG      O6     C6     HO6    .
 GLG      HO6    O6     .      .
 GLG      C4     C5     C3     .
 GLG      H4     C4     .      .
 GLG      O4     C4     HO4    .
 GLG      HO4    O4     .      .
 GLG      C3     C4     C2     .
 GLG      H3     C3     .      .
 GLG      O3     C3     HO3    .
 GLG      HO3    O3     .      .
 GLG      C2     C3     O2     .
 GLG      H2     C2     .      .
 GLG      O2     C2     HO2    .
 GLG      HO2    O2     .      .
 GLG      C1     C2     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 GLG      C1     C2        single      1.524    0.020
 GLG      O5     C1        single      1.426    0.020
 GLG      C7     C1        single      1.500    0.020
 GLG      H1     C1        single      1.099    0.020
 GLG      C2     C3        single      1.524    0.020
 GLG      O2     C2        single      1.432    0.020
 GLG      H2     C2        single      1.099    0.020
 GLG      C3     C4        single      1.524    0.020
 GLG      O3     C3        single      1.432    0.020
 GLG      H3     C3        single      1.099    0.020
 GLG      C4     C5        single      1.524    0.020
 GLG      O4     C4        single      1.432    0.020
 GLG      H4     C4        single      1.099    0.020
 GLG      C6     C5        single      1.524    0.020
 GLG      C5     O5        single      1.426    0.020
 GLG      H5     C5        single      1.099    0.020
 GLG      O6     C6        single      1.432    0.020
 GLG      H61    C6        single      1.092    0.020
 GLG      H62    C6        single      1.092    0.020
 GLG      HO2    O2        single      0.967    0.020
 GLG      HO3    O3        single      0.967    0.020
 GLG      HO4    O4        single      0.967    0.020
 GLG      HO6    O6        single      0.967    0.020
 GLG      N      C7        single      1.332    0.020
 GLG      HN1    N         single      1.010    0.020
 GLG      HN2    N         single      1.010    0.020
 GLG      O7     C7        double      1.220    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 GLG      H1     C1     C7      108.810    3.000
 GLG      H1     C1     O5      109.470    3.000
 GLG      C7     C1     O5      109.470    3.000
 GLG      H1     C1     C2      108.340    3.000
 GLG      C7     C1     C2      109.470    3.000
 GLG      O5     C1     C2      109.470    3.000
 GLG      C1     C7     N       120.000    3.000
 GLG      C1     C7     O7      120.500    3.000
 GLG      N      C7     O7      123.000    3.000
 GLG      C7     N      HN2     120.000    3.000
 GLG      C7     N      HN1     120.000    3.000
 GLG      HN2    N      HN1     120.000    3.000
 GLG      C1     O5     C5      111.800    3.000
 GLG      O5     C5     H5      109.470    3.000
 GLG      O5     C5     C6      109.470    3.000
 GLG      O5     C5     C4      109.470    3.000
 GLG      H5     C5     C6      108.340    3.000
 GLG      H5     C5     C4      108.340    3.000
 GLG      C6     C5     C4      111.000    3.000
 GLG      C5     C6     H61     109.470    3.000
 GLG      C5     C6     H62     109.470    3.000
 GLG      C5     C6     O6      109.470    3.000
 GLG      H61    C6     H62     107.900    3.000
 GLG      H61    C6     O6      109.470    3.000
 GLG      H62    C6     O6      109.470    3.000
 GLG      C6     O6     HO6     109.470    3.000
 GLG      C5     C4     H4      108.340    3.000
 GLG      C5     C4     O4      109.470    3.000
 GLG      C5     C4     C3      111.000    3.000
 GLG      H4     C4     O4      109.470    3.000
 GLG      H4     C4     C3      108.340    3.000
 GLG      O4     C4     C3      109.470    3.000
 GLG      C4     O4     HO4     109.470    3.000
 GLG      C4     C3     H3      108.340    3.000
 GLG      C4     C3     O3      109.470    3.000
 GLG      C4     C3     C2      111.000    3.000
 GLG      H3     C3     O3      109.470    3.000
 GLG      H3     C3     C2      108.340    3.000
 GLG      O3     C3     C2      109.470    3.000
 GLG      C3     O3     HO3     109.470    3.000
 GLG      C3     C2     H2      108.340    3.000
 GLG      C3     C2     O2      109.470    3.000
 GLG      C3     C2     C1      111.000    3.000
 GLG      H2     C2     O2      109.470    3.000
 GLG      H2     C2     C1      108.340    3.000
 GLG      O2     C2     C1      109.470    3.000
 GLG      C2     O2     HO2     109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 GLG      var_1    O5     C1     C7     O7      -157.538   20.000   3
 GLG      CONST_1  C1     C7     N      HN1      180.000    0.000   0
 GLG      var_2    C1     O5     C5     C4        60.000   20.000   1
 GLG      var_3    O5     C5     C6     O6        60.080   20.000   3
 GLG      var_4    C5     C6     O6     HO6      179.976   20.000   1
 GLG      var_5    O5     C5     C4     C3       -60.000   20.000   3
 GLG      var_6    C5     C4     O4     HO4      179.979   20.000   1
 GLG      var_7    C5     C4     C3     C2        60.000   20.000   3
 GLG      var_8    C4     C3     O3     HO3     -179.988   20.000   1
 GLG      var_9    C4     C3     C2     O2       180.000   20.000   3
 GLG      var_10   C3     C2     C1     O5        60.000   20.000   3
 GLG      var_11   C3     C2     O2     HO2     -179.986   20.000   1
 GLG      var_1    C5     O5     C1     C2       -60.000   20.000   1
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 GLG      chir_01  C1     C2     O5     C7        positiv
 GLG      chir_02  C2     C1     C3     O2        negativ
 GLG      chir_03  C3     C2     C4     O3        positiv
 GLG      chir_04  C4     C3     C5     O4        negativ
 GLG      chir_05  C5     C4     C6     O5        negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 GLG      plan-1    N         0.020
 GLG      plan-1    C7        0.020
 GLG      plan-1    HN1       0.020
 GLG      plan-1    HN2       0.020
 GLG      plan-2    C7        0.020
 GLG      plan-2    C1        0.020
 GLG      plan-2    N         0.020
 GLG      plan-2    O7        0.020
 GLG      plan-2    HN2       0.020
 GLG      plan-2    HN1       0.020
# ------------------------------------------------------