File: HA2.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (415 lines) | stat: -rw-r--r-- 19,060 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
HA2      HA2 '"6-[{(2S)-2-AMINO-3-[4-(BENZYLOXY)PH' non-polymer        56  29 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_HA2
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 HA2           O4     O    OC       -0.500      0.000    0.000    0.000
 HA2           C22    C    C         0.000      0.861   -0.205   -0.884
 HA2           O5     O    OC       -0.500      2.061    0.145   -0.835
 HA2           C21    C    CH2       0.000      0.423   -0.939   -2.139
 HA2           H211   H    H         0.000      1.309   -1.330   -2.644
 HA2           H212   H    H         0.000     -0.088   -0.234   -2.798
 HA2           C20    C    CH2       0.000     -0.519   -2.091   -1.792
 HA2           H201   H    H         0.000     -0.746   -2.057   -0.725
 HA2           H202   H    H         0.000     -0.028   -3.037   -2.029
 HA2           C19    C    CH2       0.000     -1.812   -1.973   -2.593
 HA2           H191   H    H         0.000     -1.692   -2.491   -3.546
 HA2           H192   H    H         0.000     -2.025   -0.918   -2.777
 HA2           C18    C    CH2       0.000     -2.964   -2.598   -1.814
 HA2           H181   H    H         0.000     -2.560   -3.084   -0.924
 HA2           H182   H    H         0.000     -3.448   -3.344   -2.447
 HA2           C17    C    C         0.000     -3.979   -1.548   -1.402
 HA2           O3     O    O         0.000     -3.844   -0.368   -1.765
 HA2           N3     N    N         0.000     -5.013   -1.916   -0.614
 HA2           O2     O    OH1       0.000     -5.127   -3.189   -0.191
 HA2           HA     H    H         0.000     -6.044   -3.469   -0.288
 HA2           C16    C    CH2       0.000     -6.019   -0.904   -0.192
 HA2           H161   H    H         0.000     -6.993   -1.201   -0.588
 HA2           H162   H    H         0.000     -5.735    0.061   -0.617
 HA2           C15    C    CH1       0.000     -6.099   -0.789    1.346
 HA2           H15    H    H         0.000     -6.545    0.180    1.611
 HA2           N2     N    NH2       0.000     -6.950   -1.864    1.860
 HA2           H2N2   H    H         0.000     -6.534   -2.696    2.259
 HA2           H2N1   H    H         0.000     -7.958   -1.779    1.820
 HA2           C14    C    CH2       0.000     -4.677   -0.884    1.974
 HA2           H141   H    H         0.000     -4.147    0.048    1.768
 HA2           H142   H    H         0.000     -4.147   -1.714    1.501
 HA2           C11    C    CR6       0.000     -4.742   -1.114    3.491
 HA2           C12    C    CR16      0.000     -4.951   -0.041    4.378
 HA2           H12    H    H         0.000     -5.108    0.959    3.993
 HA2           C13    C    CR16      0.000     -4.956   -0.272    5.770
 HA2           H13    H    H         0.000     -5.113    0.552    6.455
 HA2           C10    C    CR16      0.000     -4.553   -2.419    3.983
 HA2           H10    H    H         0.000     -4.400   -3.240    3.294
 HA2           C9     C    CR16      0.000     -4.562   -2.656    5.369
 HA2           H9     H    H         0.000     -4.420   -3.660    5.748
 HA2           C8     C    CR6       0.000     -4.757   -1.576    6.270
 HA2           O1     O    O2        0.000     -4.767   -1.816    7.681
 HA2           C7     C    CH2       0.000     -3.854   -2.687    8.348
 HA2           H7C1   H    H         0.000     -3.629   -2.265    9.330
 HA2           H7C2   H    H         0.000     -2.936   -2.742    7.759
 HA2           C4     C    CR6       0.000     -4.437   -4.082    8.514
 HA2           C3     C    CR16      0.000     -5.763   -4.374    8.114
 HA2           H3     H    H         0.000     -6.385   -3.605    7.675
 HA2           C5     C    CR16      0.000     -3.643   -5.099    9.070
 HA2           H5     H    H         0.000     -2.629   -4.875    9.375
 HA2           C6     C    CR16      0.000     -4.145   -6.406    9.237
 HA2           H6     H    H         0.000     -3.518   -7.182    9.659
 HA2           C1     C    CR16      0.000     -5.471   -6.695    8.849
 HA2           H1     H    H         0.000     -5.874   -7.692    8.978
 HA2           C2     C    CR16      0.000     -6.261   -5.678    8.294
 HA2           H2     H    H         0.000     -7.278   -5.901    7.997
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 HA2      O4     n/a    C22    START
 HA2      C22    O4     C21    .
 HA2      O5     C22    .      .
 HA2      C21    C22    C20    .
 HA2      H211   C21    .      .
 HA2      H212   C21    .      .
 HA2      C20    C21    C19    .
 HA2      H201   C20    .      .
 HA2      H202   C20    .      .
 HA2      C19    C20    C18    .
 HA2      H191   C19    .      .
 HA2      H192   C19    .      .
 HA2      C18    C19    C17    .
 HA2      H181   C18    .      .
 HA2      H182   C18    .      .
 HA2      C17    C18    N3     .
 HA2      O3     C17    .      .
 HA2      N3     C17    C16    .
 HA2      O2     N3     HA     .
 HA2      HA     O2     .      .
 HA2      C16    N3     C15    .
 HA2      H161   C16    .      .
 HA2      H162   C16    .      .
 HA2      C15    C16    C14    .
 HA2      H15    C15    .      .
 HA2      N2     C15    H2N1   .
 HA2      H2N2   N2     .      .
 HA2      H2N1   N2     .      .
 HA2      C14    C15    C11    .
 HA2      H141   C14    .      .
 HA2      H142   C14    .      .
 HA2      C11    C14    C10    .
 HA2      C12    C11    C13    .
 HA2      H12    C12    .      .
 HA2      C13    C12    H13    .
 HA2      H13    C13    .      .
 HA2      C10    C11    C9     .
 HA2      H10    C10    .      .
 HA2      C9     C10    C8     .
 HA2      H9     C9     .      .
 HA2      C8     C9     O1     .
 HA2      O1     C8     C7     .
 HA2      C7     O1     C4     .
 HA2      H7C1   C7     .      .
 HA2      H7C2   C7     .      .
 HA2      C4     C7     C5     .
 HA2      C3     C4     H3     .
 HA2      H3     C3     .      .
 HA2      C5     C4     C6     .
 HA2      H5     C5     .      .
 HA2      C6     C5     C1     .
 HA2      H6     C6     .      .
 HA2      C1     C6     C2     .
 HA2      H1     C1     .      .
 HA2      C2     C1     H2     .
 HA2      H2     C2     .      END
 HA2      C3     C2     .    ADD
 HA2      C8     C13    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 HA2      C3     C2        single      1.390    0.020
 HA2      C3     C4        double      1.390    0.020
 HA2      C2     C1        double      1.390    0.020
 HA2      C1     C6        single      1.390    0.020
 HA2      C6     C5        double      1.390    0.020
 HA2      C5     C4        single      1.390    0.020
 HA2      C4     C7        single      1.511    0.020
 HA2      C7     O1        single      1.426    0.020
 HA2      O1     C8        single      1.370    0.020
 HA2      C8     C13       single      1.390    0.020
 HA2      C8     C9        double      1.390    0.020
 HA2      C13    C12       double      1.390    0.020
 HA2      C12    C11       single      1.390    0.020
 HA2      C9     C10       single      1.390    0.020
 HA2      C10    C11       double      1.390    0.020
 HA2      C11    C14       single      1.511    0.020
 HA2      C14    C15       single      1.524    0.020
 HA2      N2     C15       single      1.450    0.020
 HA2      C15    C16       single      1.524    0.020
 HA2      C16    N3        single      1.455    0.020
 HA2      O2     N3        single      1.392    0.020
 HA2      N3     C17       single      1.330    0.020
 HA2      O3     C17       double      1.220    0.020
 HA2      C17    C18       single      1.510    0.020
 HA2      C18    C19       single      1.524    0.020
 HA2      C19    C20       single      1.524    0.020
 HA2      C20    C21       single      1.524    0.020
 HA2      C21    C22       single      1.510    0.020
 HA2      O5     C22       deloc       1.250    0.020
 HA2      C22    O4        deloc       1.250    0.020
 HA2      H3     C3        single      1.083    0.020
 HA2      H2     C2        single      1.083    0.020
 HA2      H1     C1        single      1.083    0.020
 HA2      H6     C6        single      1.083    0.020
 HA2      H5     C5        single      1.083    0.020
 HA2      H7C1   C7        single      1.092    0.020
 HA2      H7C2   C7        single      1.092    0.020
 HA2      H13    C13       single      1.083    0.020
 HA2      H9     C9        single      1.083    0.020
 HA2      H12    C12       single      1.083    0.020
 HA2      H10    C10       single      1.083    0.020
 HA2      H141   C14       single      1.092    0.020
 HA2      H142   C14       single      1.092    0.020
 HA2      H15    C15       single      1.099    0.020
 HA2      H2N1   N2        single      1.010    0.020
 HA2      H2N2   N2        single      1.010    0.020
 HA2      H161   C16       single      1.092    0.020
 HA2      H162   C16       single      1.092    0.020
 HA2      HA     O2        single      0.967    0.020
 HA2      H181   C18       single      1.092    0.020
 HA2      H182   C18       single      1.092    0.020
 HA2      H191   C19       single      1.092    0.020
 HA2      H192   C19       single      1.092    0.020
 HA2      H201   C20       single      1.092    0.020
 HA2      H202   C20       single      1.092    0.020
 HA2      H211   C21       single      1.092    0.020
 HA2      H212   C21       single      1.092    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 HA2      O4     C22    O5      123.000    3.000
 HA2      O4     C22    C21     118.500    3.000
 HA2      O5     C22    C21     118.500    3.000
 HA2      C22    C21    H211    109.470    3.000
 HA2      C22    C21    H212    109.470    3.000
 HA2      C22    C21    C20     109.470    3.000
 HA2      H211   C21    H212    107.900    3.000
 HA2      H211   C21    C20     109.470    3.000
 HA2      H212   C21    C20     109.470    3.000
 HA2      C21    C20    H201    109.470    3.000
 HA2      C21    C20    H202    109.470    3.000
 HA2      C21    C20    C19     111.000    3.000
 HA2      H201   C20    H202    107.900    3.000
 HA2      H201   C20    C19     109.470    3.000
 HA2      H202   C20    C19     109.470    3.000
 HA2      C20    C19    H191    109.470    3.000
 HA2      C20    C19    H192    109.470    3.000
 HA2      C20    C19    C18     111.000    3.000
 HA2      H191   C19    H192    107.900    3.000
 HA2      H191   C19    C18     109.470    3.000
 HA2      H192   C19    C18     109.470    3.000
 HA2      C19    C18    H181    109.470    3.000
 HA2      C19    C18    H182    109.470    3.000
 HA2      C19    C18    C17     109.470    3.000
 HA2      H181   C18    H182    107.900    3.000
 HA2      H181   C18    C17     109.470    3.000
 HA2      H182   C18    C17     109.470    3.000
 HA2      C18    C17    O3      120.500    3.000
 HA2      C18    C17    N3      116.500    3.000
 HA2      O3     C17    N3      123.000    3.000
 HA2      C17    N3     O2      120.000    3.000
 HA2      C17    N3     C16     127.000    3.000
 HA2      O2     N3     C16     120.000    3.000
 HA2      N3     O2     HA      109.470    3.000
 HA2      N3     C16    H161    109.470    3.000
 HA2      N3     C16    H162    109.470    3.000
 HA2      N3     C16    C15     105.000    3.000
 HA2      H161   C16    H162    107.900    3.000
 HA2      H161   C16    C15     109.470    3.000
 HA2      H162   C16    C15     109.470    3.000
 HA2      C16    C15    H15     108.340    3.000
 HA2      C16    C15    N2      109.470    3.000
 HA2      C16    C15    C14     109.470    3.000
 HA2      H15    C15    N2      109.470    3.000
 HA2      H15    C15    C14     108.340    3.000
 HA2      N2     C15    C14     109.470    3.000
 HA2      C15    N2     H2N2    120.000    3.000
 HA2      C15    N2     H2N1    120.000    3.000
 HA2      H2N2   N2     H2N1    120.000    3.000
 HA2      C15    C14    H141    109.470    3.000
 HA2      C15    C14    H142    109.470    3.000
 HA2      C15    C14    C11     109.470    3.000
 HA2      H141   C14    H142    107.900    3.000
 HA2      H141   C14    C11     109.470    3.000
 HA2      H142   C14    C11     109.470    3.000
 HA2      C14    C11    C12     120.000    3.000
 HA2      C14    C11    C10     120.000    3.000
 HA2      C12    C11    C10     120.000    3.000
 HA2      C11    C12    H12     120.000    3.000
 HA2      C11    C12    C13     120.000    3.000
 HA2      H12    C12    C13     120.000    3.000
 HA2      C12    C13    H13     120.000    3.000
 HA2      C12    C13    C8      120.000    3.000
 HA2      H13    C13    C8      120.000    3.000
 HA2      C11    C10    H10     120.000    3.000
 HA2      C11    C10    C9      120.000    3.000
 HA2      H10    C10    C9      120.000    3.000
 HA2      C10    C9     H9      120.000    3.000
 HA2      C10    C9     C8      120.000    3.000
 HA2      H9     C9     C8      120.000    3.000
 HA2      C9     C8     O1      120.000    3.000
 HA2      C9     C8     C13     120.000    3.000
 HA2      O1     C8     C13     120.000    3.000
 HA2      C8     O1     C7      120.000    3.000
 HA2      O1     C7     H7C1    109.470    3.000
 HA2      O1     C7     H7C2    109.470    3.000
 HA2      O1     C7     C4      109.470    3.000
 HA2      H7C1   C7     H7C2    107.900    3.000
 HA2      H7C1   C7     C4      109.470    3.000
 HA2      H7C2   C7     C4      109.470    3.000
 HA2      C7     C4     C3      120.000    3.000
 HA2      C7     C4     C5      120.000    3.000
 HA2      C3     C4     C5      120.000    3.000
 HA2      C4     C3     H3      120.000    3.000
 HA2      C4     C3     C2      120.000    3.000
 HA2      H3     C3     C2      120.000    3.000
 HA2      C4     C5     H5      120.000    3.000
 HA2      C4     C5     C6      120.000    3.000
 HA2      H5     C5     C6      120.000    3.000
 HA2      C5     C6     H6      120.000    3.000
 HA2      C5     C6     C1      120.000    3.000
 HA2      H6     C6     C1      120.000    3.000
 HA2      C6     C1     H1      120.000    3.000
 HA2      C6     C1     C2      120.000    3.000
 HA2      H1     C1     C2      120.000    3.000
 HA2      C1     C2     H2      120.000    3.000
 HA2      C1     C2     C3      120.000    3.000
 HA2      H2     C2     C3      120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 HA2      var_1    O4     C22    C21    C20      -40.835   20.000   3
 HA2      var_2    C22    C21    C20    C19      126.201   20.000   3
 HA2      var_3    C21    C20    C19    C18     -151.185   20.000   3
 HA2      var_4    C20    C19    C18    C17      113.861   20.000   3
 HA2      var_5    C19    C18    C17    N3      -174.986   20.000   3
 HA2      CONST_1  C18    C17    N3     C16      180.000    0.000   0
 HA2      var_6    C17    N3     O2     HA      -135.855   20.000   1
 HA2      var_7    C17    N3     C16    C15     -121.099   20.000   1
 HA2      var_8    N3     C16    C15    C14       39.395   20.000   3
 HA2      var_9    C16    C15    N2     H2N1     -79.736   20.000   1
 HA2      var_10   C16    C15    C14    C11     -166.249   20.000   3
 HA2      var_11   C15    C14    C11    C10      100.183   20.000   2
 HA2      CONST_2  C14    C11    C12    C13      180.000    0.000   0
 HA2      CONST_3  C11    C12    C13    C8         0.000    0.000   0
 HA2      CONST_4  C14    C11    C10    C9       180.000    0.000   0
 HA2      CONST_5  C11    C10    C9     C8         0.000    0.000   0
 HA2      CONST_6  C10    C9     C8     O1       180.000    0.000   0
 HA2      CONST_7  C9     C8     C13    C12        0.000    0.000   0
 HA2      var_12   C9     C8     O1     C7        42.039   20.000   1
 HA2      var_13   C8     O1     C7     C4       -94.466   20.000   1
 HA2      var_14   O1     C7     C4     C5       175.744   20.000   2
 HA2      CONST_8  C7     C4     C3     C2       180.000    0.000   0
 HA2      CONST_9  C4     C3     C2     C1         0.000    0.000   0
 HA2      CONST_10 C7     C4     C5     C6       180.000    0.000   0
 HA2      CONST_11 C4     C5     C6     C1         0.000    0.000   0
 HA2      CONST_12 C5     C6     C1     C2         0.000    0.000   0
 HA2      CONST_13 C6     C1     C2     C3         0.000    0.000   0
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 HA2      chir_01  C15    C14    N2     C16       positiv
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 HA2      plan-1    C3        0.020
 HA2      plan-1    C2        0.020
 HA2      plan-1    C4        0.020
 HA2      plan-1    H3        0.020
 HA2      plan-1    C1        0.020
 HA2      plan-1    C6        0.020
 HA2      plan-1    C5        0.020
 HA2      plan-1    H2        0.020
 HA2      plan-1    H1        0.020
 HA2      plan-1    H6        0.020
 HA2      plan-1    H5        0.020
 HA2      plan-1    C7        0.020
 HA2      plan-2    C8        0.020
 HA2      plan-2    O1        0.020
 HA2      plan-2    C13       0.020
 HA2      plan-2    C9        0.020
 HA2      plan-2    C12       0.020
 HA2      plan-2    C10       0.020
 HA2      plan-2    C11       0.020
 HA2      plan-2    H13       0.020
 HA2      plan-2    H12       0.020
 HA2      plan-2    H9        0.020
 HA2      plan-2    H10       0.020
 HA2      plan-2    C14       0.020
 HA2      plan-3    N2        0.020
 HA2      plan-3    C15       0.020
 HA2      plan-3    H2N1      0.020
 HA2      plan-3    H2N2      0.020
 HA2      plan-4    N3        0.020
 HA2      plan-4    C16       0.020
 HA2      plan-4    O2        0.020
 HA2      plan-4    C17       0.020
 HA2      plan-5    C17       0.020
 HA2      plan-5    N3        0.020
 HA2      plan-5    O3        0.020
 HA2      plan-5    C18       0.020
 HA2      plan-6    C22       0.020
 HA2      plan-6    C21       0.020
 HA2      plan-6    O5        0.020
 HA2      plan-6    O4        0.020
# ------------------------------------------------------