File: HCZ.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (241 lines) | stat: -rw-r--r-- 10,072 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
HCZ      HCZ '6-chloro-3,4-dihydro-2H-1,2,4-benzot' non-polymer        25  17 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_HCZ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 HCZ           O17    O    OS        0.000      0.000    0.000    0.000
 HCZ           S15    S    ST        0.000     -1.031   -0.264   -0.941
 HCZ           O16    O    OS        0.000     -1.163    0.429   -2.176
 HCZ           C07    C    CR6       0.000     -2.565   -0.076   -0.084
 HCZ           C06    C    CR16      0.000     -2.855    1.112    0.554
 HCZ           H06    H    H         0.000     -2.132    1.919    0.548
 HCZ           N14    N    NH1       0.000     -0.944   -1.889   -1.308
 HCZ           HN14   H    H         0.000     -0.080   -2.408   -1.246
 HCZ           C13    C    CH2       0.000     -2.209   -2.523   -1.731
 HCZ           H13    H    H         0.000     -2.047   -3.588   -1.912
 HCZ           H13A   H    H         0.000     -2.572   -2.051   -2.646
 HCZ           N12    N    NH1       0.000     -3.197   -2.353   -0.669
 HCZ           HN12   H    H         0.000     -3.705   -3.166   -0.351
 HCZ           C08    C    CR6       0.000     -3.475   -1.125   -0.072
 HCZ           C09    C    CR16      0.000     -4.696   -0.953    0.576
 HCZ           H09    H    H         0.000     -5.422   -1.757    0.581
 HCZ           C10    C    CR6       0.000     -4.984    0.237    1.211
 HCZ           CL11   CL   CL        0.000     -6.506    0.440    2.022
 HCZ           C05    C    CR6       0.000     -4.065    1.273    1.201
 HCZ           S02    S    ST        0.000     -4.436    2.790    2.018
 HCZ           O03    O    OS        0.000     -3.321    3.645    1.802
 HCZ           O04    O    OS        0.000     -4.912    2.444    3.311
 HCZ           N01    N    NH2       0.000     -5.713    3.478    1.217
 HCZ           HN0A   H    H         0.000     -6.607    2.994    1.145
 HCZ           HN01   H    H         0.000     -5.626    4.397    0.785
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 HCZ      O17    n/a    S15    START
 HCZ      S15    O17    N14    .
 HCZ      O16    S15    .      .
 HCZ      C07    S15    C06    .
 HCZ      C06    C07    H06    .
 HCZ      H06    C06    .      .
 HCZ      N14    S15    C13    .
 HCZ      HN14   N14    .      .
 HCZ      C13    N14    N12    .
 HCZ      H13    C13    .      .
 HCZ      H13A   C13    .      .
 HCZ      N12    C13    C08    .
 HCZ      HN12   N12    .      .
 HCZ      C08    N12    C09    .
 HCZ      C09    C08    C10    .
 HCZ      H09    C09    .      .
 HCZ      C10    C09    C05    .
 HCZ      CL11   C10    .      .
 HCZ      C05    C10    S02    .
 HCZ      S02    C05    N01    .
 HCZ      O03    S02    .      .
 HCZ      O04    S02    .      .
 HCZ      N01    S02    HN01   .
 HCZ      HN0A   N01    .      .
 HCZ      HN01   N01    .      END
 HCZ      C05    C06    .    ADD
 HCZ      C07    C08    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 HCZ      N01    S02       single      1.600    0.020
 HCZ      O03    S02       double      1.436    0.020
 HCZ      O04    S02       double      1.436    0.020
 HCZ      S02    C05       single      1.595    0.020
 HCZ      C05    C06       double      1.390    0.020
 HCZ      C05    C10       single      1.487    0.020
 HCZ      C06    C07       single      1.390    0.020
 HCZ      C07    C08       double      1.487    0.020
 HCZ      C07    S15       single      1.595    0.020
 HCZ      C09    C08       single      1.390    0.020
 HCZ      C08    N12       single      1.350    0.020
 HCZ      C10    C09       double      1.390    0.020
 HCZ      CL11   C10       single      1.795    0.020
 HCZ      N12    C13       single      1.450    0.020
 HCZ      C13    N14       single      1.450    0.020
 HCZ      N14    S15       single      1.600    0.020
 HCZ      O16    S15       double      1.436    0.020
 HCZ      S15    O17       double      1.436    0.020
 HCZ      HN01   N01       single      1.010    0.020
 HCZ      HN0A   N01       single      1.010    0.020
 HCZ      H06    C06       single      1.083    0.020
 HCZ      H09    C09       single      1.083    0.020
 HCZ      HN12   N12       single      1.010    0.020
 HCZ      H13    C13       single      1.092    0.020
 HCZ      H13A   C13       single      1.092    0.020
 HCZ      HN14   N14       single      1.010    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 HCZ      O17    S15    O16     109.500    3.000
 HCZ      O17    S15    C07     109.500    3.000
 HCZ      O17    S15    N14     109.500    3.000
 HCZ      O16    S15    C07     109.500    3.000
 HCZ      O16    S15    N14     109.500    3.000
 HCZ      C07    S15    N14     109.500    3.000
 HCZ      S15    C07    C06     120.000    3.000
 HCZ      S15    C07    C08     120.000    3.000
 HCZ      C06    C07    C08     120.000    3.000
 HCZ      C07    C06    H06     120.000    3.000
 HCZ      C07    C06    C05     120.000    3.000
 HCZ      H06    C06    C05     120.000    3.000
 HCZ      S15    N14    HN14    120.000    3.000
 HCZ      S15    N14    C13     120.000    3.000
 HCZ      HN14   N14    C13     118.500    3.000
 HCZ      N14    C13    H13     109.470    3.000
 HCZ      N14    C13    H13A    109.470    3.000
 HCZ      N14    C13    N12     109.470    3.000
 HCZ      H13    C13    H13A    107.900    3.000
 HCZ      H13    C13    N12     109.470    3.000
 HCZ      H13A   C13    N12     109.470    3.000
 HCZ      C13    N12    HN12    118.500    3.000
 HCZ      C13    N12    C08     120.000    3.000
 HCZ      HN12   N12    C08     120.000    3.000
 HCZ      N12    C08    C09     120.000    3.000
 HCZ      N12    C08    C07     120.000    3.000
 HCZ      C09    C08    C07     120.000    3.000
 HCZ      C08    C09    H09     120.000    3.000
 HCZ      C08    C09    C10     120.000    3.000
 HCZ      H09    C09    C10     120.000    3.000
 HCZ      C09    C10    CL11    120.000    3.000
 HCZ      C09    C10    C05     120.000    3.000
 HCZ      CL11   C10    C05     120.000    3.000
 HCZ      C10    C05    S02     120.000    3.000
 HCZ      C10    C05    C06     120.000    3.000
 HCZ      S02    C05    C06     120.000    3.000
 HCZ      C05    S02    O03     109.500    3.000
 HCZ      C05    S02    O04     109.500    3.000
 HCZ      C05    S02    N01     109.500    3.000
 HCZ      O03    S02    O04     109.500    3.000
 HCZ      O03    S02    N01     109.500    3.000
 HCZ      O04    S02    N01     109.500    3.000
 HCZ      S02    N01    HN0A    120.000    3.000
 HCZ      S02    N01    HN01    120.000    3.000
 HCZ      HN0A   N01    HN01    120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 HCZ      var_1    O17    S15    C07    C06       60.000   20.000   1
 HCZ      CONST_1  S15    C07    C08    N12        0.000    0.000   0
 HCZ      CONST_2  S15    C07    C06    C05      180.000    0.000   0
 HCZ      var_2    O17    S15    N14    C13      150.000   20.000   1
 HCZ      var_3    S15    N14    C13    N12      -60.000   20.000   3
 HCZ      var_4    N14    C13    N12    C08       60.000   20.000   3
 HCZ      var_5    C13    N12    C08    C09      150.000   20.000   1
 HCZ      CONST_3  N12    C08    C09    C10      180.000    0.000   0
 HCZ      CONST_4  C08    C09    C10    C05        0.000    0.000   0
 HCZ      CONST_5  C09    C10    C05    S02      180.000    0.000   0
 HCZ      CONST_6  C10    C05    C06    C07        0.000    0.000   0
 HCZ      var_6    C10    C05    S02    N01      -65.302   20.000   1
 HCZ      var_7    C05    S02    N01    HN01    -119.970   20.000   1
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 HCZ      chir_01  S02    N01    O03    O04       negativ
 HCZ      chir_02  S15    C07    N14    O16       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 HCZ      plan-1    N01       0.020
 HCZ      plan-1    S02       0.020
 HCZ      plan-1    HN01      0.020
 HCZ      plan-1    HN0A      0.020
 HCZ      plan-2    C05       0.020
 HCZ      plan-2    S02       0.020
 HCZ      plan-2    C06       0.020
 HCZ      plan-2    C10       0.020
 HCZ      plan-2    C07       0.020
 HCZ      plan-2    C08       0.020
 HCZ      plan-2    C09       0.020
 HCZ      plan-2    H06       0.020
 HCZ      plan-2    S15       0.020
 HCZ      plan-2    N12       0.020
 HCZ      plan-2    H09       0.020
 HCZ      plan-2    CL11      0.020
 HCZ      plan-2    HN12      0.020
 HCZ      plan-3    N12       0.020
 HCZ      plan-3    C08       0.020
 HCZ      plan-3    C13       0.020
 HCZ      plan-3    HN12      0.020
 HCZ      plan-4    N14       0.020
 HCZ      plan-4    C13       0.020
 HCZ      plan-4    S15       0.020
 HCZ      plan-4    HN14      0.020
# ------------------------------------------------------