File: HSH.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (333 lines) | stat: -rw-r--r-- 15,483 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
HSH      HSH 'octyl beta-D-galactopyranoside      ' non-polymer        48  20 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_HSH
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 HSH           O6     O    OH1       0.000      0.000    0.000    0.000
 HSH           H28    H    H         0.000     -0.210   -0.940   -0.078
 HSH           C14    C    CH1       0.000     -1.066    0.774   -0.556
 HSH           H27    H    H         0.000     -1.192    0.517   -1.617
 HSH           C13    C    CH1       0.000     -0.739    2.264   -0.425
 HSH           H25    H    H         0.000     -0.562    2.511    0.631
 HSH           O5     O    OH1       0.000      0.431    2.566   -1.189
 HSH           H26    H    H         0.000      1.176    2.048   -0.855
 HSH           C12    C    CH1       0.000     -1.921    3.083   -0.953
 HSH           H23    H    H         0.000     -1.718    4.154   -0.812
 HSH           O4     O    OH1       0.000     -2.108    2.810   -2.343
 HSH           H24    H    H         0.000     -1.309    3.056   -2.829
 HSH           C10    C    CH1       0.000     -3.185    2.695   -0.181
 HSH           H19    H    H         0.000     -3.056    2.943    0.882
 HSH           C11    C    CH2       0.000     -4.382    3.465   -0.743
 HSH           H20    H    H         0.000     -4.564    3.154   -1.774
 HSH           H21    H    H         0.000     -4.169    4.536   -0.720
 HSH           O3     O    OH1       0.000     -5.539    3.191    0.050
 HSH           H22    H    H         0.000     -6.295    3.678   -0.305
 HSH           O2     O    O2        0.000     -3.414    1.292   -0.319
 HSH           C9     C    CH1       0.000     -2.362    0.475    0.200
 HSH           H18    H    H         0.000     -2.222    0.693    1.268
 HSH           O1     O    O2        0.000     -2.705   -0.903    0.036
 HSH           C8     C    CH2       0.000     -3.843   -1.314    0.796
 HSH           H16    H    H         0.000     -4.713   -0.728    0.494
 HSH           H17    H    H         0.000     -3.648   -1.154    1.859
 HSH           C7     C    CH2       0.000     -4.114   -2.799    0.544
 HSH           H14    H    H         0.000     -3.243   -3.384    0.846
 HSH           H15    H    H         0.000     -4.308   -2.958   -0.518
 HSH           C6     C    CH2       0.000     -5.333   -3.239    1.358
 HSH           H12    H    H         0.000     -6.203   -2.653    1.057
 HSH           H13    H    H         0.000     -5.137   -3.080    2.421
 HSH           C5     C    CH2       0.000     -5.604   -4.724    1.106
 HSH           H10    H    H         0.000     -4.733   -5.309    1.407
 HSH           H11    H    H         0.000     -5.798   -4.883    0.043
 HSH           C4     C    CH2       0.000     -6.824   -5.164    1.920
 HSH           H8     H    H         0.000     -7.694   -4.577    1.617
 HSH           H9     H    H         0.000     -6.629   -5.003    2.982
 HSH           C3     C    CH2       0.000     -7.095   -6.648    1.668
 HSH           H6     H    H         0.000     -6.224   -7.233    1.970
 HSH           H7     H    H         0.000     -7.288   -6.807    0.605
 HSH           C2     C    CH2       0.000     -8.314   -7.089    2.481
 HSH           H4     H    H         0.000     -9.184   -6.503    2.178
 HSH           H5     H    H         0.000     -8.119   -6.929    3.543
 HSH           C1     C    CH3       0.000     -8.585   -8.574    2.229
 HSH           H3     H    H         0.000     -7.741   -9.145    2.521
 HSH           H2     H    H         0.000     -9.429   -8.882    2.792
 HSH           H1     H    H         0.000     -8.775   -8.732    1.198
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 HSH      O6     n/a    C14    START
 HSH      H28    O6     .      .
 HSH      C14    O6     C9     .
 HSH      H27    C14    .      .
 HSH      C13    C14    C12    .
 HSH      H25    C13    .      .
 HSH      O5     C13    H26    .
 HSH      H26    O5     .      .
 HSH      C12    C13    C10    .
 HSH      H23    C12    .      .
 HSH      O4     C12    H24    .
 HSH      H24    O4     .      .
 HSH      C10    C12    O2     .
 HSH      H19    C10    .      .
 HSH      C11    C10    O3     .
 HSH      H20    C11    .      .
 HSH      H21    C11    .      .
 HSH      O3     C11    H22    .
 HSH      H22    O3     .      .
 HSH      O2     C10    .      .
 HSH      C9     C14    O1     .
 HSH      H18    C9     .      .
 HSH      O1     C9     C8     .
 HSH      C8     O1     C7     .
 HSH      H16    C8     .      .
 HSH      H17    C8     .      .
 HSH      C7     C8     C6     .
 HSH      H14    C7     .      .
 HSH      H15    C7     .      .
 HSH      C6     C7     C5     .
 HSH      H12    C6     .      .
 HSH      H13    C6     .      .
 HSH      C5     C6     C4     .
 HSH      H10    C5     .      .
 HSH      H11    C5     .      .
 HSH      C4     C5     C3     .
 HSH      H8     C4     .      .
 HSH      H9     C4     .      .
 HSH      C3     C4     C2     .
 HSH      H6     C3     .      .
 HSH      H7     C3     .      .
 HSH      C2     C3     C1     .
 HSH      H4     C2     .      .
 HSH      H5     C2     .      .
 HSH      C1     C2     H1     .
 HSH      H3     C1     .      .
 HSH      H2     C1     .      .
 HSH      H1     C1     .      END
 HSH      C9     O2     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 HSH      C1     C2        single      1.513    0.020
 HSH      C2     C3        single      1.524    0.020
 HSH      C3     C4        single      1.524    0.020
 HSH      C4     C5        single      1.524    0.020
 HSH      C5     C6        single      1.524    0.020
 HSH      C6     C7        single      1.524    0.020
 HSH      C7     C8        single      1.524    0.020
 HSH      C8     O1        single      1.426    0.020
 HSH      O1     C9        single      1.426    0.020
 HSH      C9     O2        single      1.426    0.020
 HSH      O2     C10       single      1.426    0.020
 HSH      C11    C10       single      1.524    0.020
 HSH      O3     C11       single      1.432    0.020
 HSH      C10    C12       single      1.524    0.020
 HSH      O4     C12       single      1.432    0.020
 HSH      C12    C13       single      1.524    0.020
 HSH      O5     C13       single      1.432    0.020
 HSH      C13    C14       single      1.524    0.020
 HSH      C9     C14       single      1.524    0.020
 HSH      C14    O6        single      1.432    0.020
 HSH      H1     C1        single      1.059    0.020
 HSH      H2     C1        single      1.059    0.020
 HSH      H3     C1        single      1.059    0.020
 HSH      H4     C2        single      1.092    0.020
 HSH      H5     C2        single      1.092    0.020
 HSH      H6     C3        single      1.092    0.020
 HSH      H7     C3        single      1.092    0.020
 HSH      H8     C4        single      1.092    0.020
 HSH      H9     C4        single      1.092    0.020
 HSH      H10    C5        single      1.092    0.020
 HSH      H11    C5        single      1.092    0.020
 HSH      H12    C6        single      1.092    0.020
 HSH      H13    C6        single      1.092    0.020
 HSH      H14    C7        single      1.092    0.020
 HSH      H15    C7        single      1.092    0.020
 HSH      H16    C8        single      1.092    0.020
 HSH      H17    C8        single      1.092    0.020
 HSH      H18    C9        single      1.099    0.020
 HSH      H19    C10       single      1.099    0.020
 HSH      H20    C11       single      1.092    0.020
 HSH      H21    C11       single      1.092    0.020
 HSH      H22    O3        single      0.967    0.020
 HSH      H23    C12       single      1.099    0.020
 HSH      H24    O4        single      0.967    0.020
 HSH      H25    C13       single      1.099    0.020
 HSH      H26    O5        single      0.967    0.020
 HSH      H27    C14       single      1.099    0.020
 HSH      H28    O6        single      0.967    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 HSH      H28    O6     C14     109.470    3.000
 HSH      O6     C14    H27     109.470    3.000
 HSH      O6     C14    C13     109.470    3.000
 HSH      O6     C14    C9      109.470    3.000
 HSH      H27    C14    C13     108.340    3.000
 HSH      H27    C14    C9      108.340    3.000
 HSH      C13    C14    C9      111.000    3.000
 HSH      C14    C13    H25     108.340    3.000
 HSH      C14    C13    O5      109.470    3.000
 HSH      C14    C13    C12     111.000    3.000
 HSH      H25    C13    O5      109.470    3.000
 HSH      H25    C13    C12     108.340    3.000
 HSH      O5     C13    C12     109.470    3.000
 HSH      C13    O5     H26     109.470    3.000
 HSH      C13    C12    H23     108.340    3.000
 HSH      C13    C12    O4      109.470    3.000
 HSH      C13    C12    C10     111.000    3.000
 HSH      H23    C12    O4      109.470    3.000
 HSH      H23    C12    C10     108.340    3.000
 HSH      O4     C12    C10     109.470    3.000
 HSH      C12    O4     H24     109.470    3.000
 HSH      C12    C10    H19     108.340    3.000
 HSH      C12    C10    C11     111.000    3.000
 HSH      C12    C10    O2      109.470    3.000
 HSH      H19    C10    C11     108.340    3.000
 HSH      H19    C10    O2      109.470    3.000
 HSH      C11    C10    O2      109.470    3.000
 HSH      C10    C11    H20     109.470    3.000
 HSH      C10    C11    H21     109.470    3.000
 HSH      C10    C11    O3      109.470    3.000
 HSH      H20    C11    H21     107.900    3.000
 HSH      H20    C11    O3      109.470    3.000
 HSH      H21    C11    O3      109.470    3.000
 HSH      C11    O3     H22     109.470    3.000
 HSH      C10    O2     C9      111.800    3.000
 HSH      C14    C9     H18     108.340    3.000
 HSH      C14    C9     O1      109.470    3.000
 HSH      C14    C9     O2      109.470    3.000
 HSH      H18    C9     O1      109.470    3.000
 HSH      H18    C9     O2      109.470    3.000
 HSH      O1     C9     O2      109.470    3.000
 HSH      C9     O1     C8      111.800    3.000
 HSH      O1     C8     H16     109.470    3.000
 HSH      O1     C8     H17     109.470    3.000
 HSH      O1     C8     C7      109.470    3.000
 HSH      H16    C8     H17     107.900    3.000
 HSH      H16    C8     C7      109.470    3.000
 HSH      H17    C8     C7      109.470    3.000
 HSH      C8     C7     H14     109.470    3.000
 HSH      C8     C7     H15     109.470    3.000
 HSH      C8     C7     C6      111.000    3.000
 HSH      H14    C7     H15     107.900    3.000
 HSH      H14    C7     C6      109.470    3.000
 HSH      H15    C7     C6      109.470    3.000
 HSH      C7     C6     H12     109.470    3.000
 HSH      C7     C6     H13     109.470    3.000
 HSH      C7     C6     C5      111.000    3.000
 HSH      H12    C6     H13     107.900    3.000
 HSH      H12    C6     C5      109.470    3.000
 HSH      H13    C6     C5      109.470    3.000
 HSH      C6     C5     H10     109.470    3.000
 HSH      C6     C5     H11     109.470    3.000
 HSH      C6     C5     C4      111.000    3.000
 HSH      H10    C5     H11     107.900    3.000
 HSH      H10    C5     C4      109.470    3.000
 HSH      H11    C5     C4      109.470    3.000
 HSH      C5     C4     H8      109.470    3.000
 HSH      C5     C4     H9      109.470    3.000
 HSH      C5     C4     C3      111.000    3.000
 HSH      H8     C4     H9      107.900    3.000
 HSH      H8     C4     C3      109.470    3.000
 HSH      H9     C4     C3      109.470    3.000
 HSH      C4     C3     H6      109.470    3.000
 HSH      C4     C3     H7      109.470    3.000
 HSH      C4     C3     C2      111.000    3.000
 HSH      H6     C3     H7      107.900    3.000
 HSH      H6     C3     C2      109.470    3.000
 HSH      H7     C3     C2      109.470    3.000
 HSH      C3     C2     H4      109.470    3.000
 HSH      C3     C2     H5      109.470    3.000
 HSH      C3     C2     C1      111.000    3.000
 HSH      H4     C2     H5      107.900    3.000
 HSH      H4     C2     C1      109.470    3.000
 HSH      H5     C2     C1      109.470    3.000
 HSH      C2     C1     H3      109.470    3.000
 HSH      C2     C1     H2      109.470    3.000
 HSH      C2     C1     H1      109.470    3.000
 HSH      H3     C1     H2      109.470    3.000
 HSH      H3     C1     H1      109.470    3.000
 HSH      H2     C1     H1      109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 HSH      var_1    H28    O6     C14    C9        59.985   20.000   1
 HSH      var_2    O6     C14    C13    C12      180.000   20.000   3
 HSH      var_3    C14    C13    O5     H26      -60.408   20.000   1
 HSH      var_4    C14    C13    C12    C10       60.000   20.000   3
 HSH      var_5    C13    C12    O4     H24      -60.348   20.000   1
 HSH      var_6    C13    C12    C10    O2       -60.000   20.000   3
 HSH      var_7    C12    C10    C11    O3      -175.061   20.000   3
 HSH      var_8    C10    C11    O3     H22      179.980   20.000   1
 HSH      var_9    C12    C10    O2     C9        60.000   20.000   1
 HSH      var_10   O6     C14    C9     O1       -60.000   20.000   3
 HSH      var_11   C14    C9     O2     C10      -60.000   20.000   1
 HSH      var_12   C14    C9     O1     C8       175.061   20.000   1
 HSH      var_13   C9     O1     C8     C7      -179.965   20.000   1
 HSH      var_14   O1     C8     C7     C6       179.992   20.000   3
 HSH      var_15   C8     C7     C6     C5       179.969   20.000   3
 HSH      var_16   C7     C6     C5     C4      -179.975   20.000   3
 HSH      var_17   C6     C5     C4     C3      -179.969   20.000   3
 HSH      var_18   C5     C4     C3     C2      -179.995   20.000   3
 HSH      var_19   C4     C3     C2     C1       180.000   20.000   3
 HSH      var_20   C3     C2     C1     H1       -60.030   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 HSH      chir_01  C9     O1     O2     C14       positiv
 HSH      chir_02  C10    O2     C11    C12       positiv
 HSH      chir_03  C12    C10    O4     C13       positiv
 HSH      chir_04  C13    C12    O5     C14       positiv
 HSH      chir_05  C14    C9     C13    O6        negativ
# ------------------------------------------------------