File: HXX.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (162 lines) | stat: -rw-r--r-- 6,292 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
HXX      HXX '3,6-dichloro-2-hydroxybenzoic acid  ' non-polymer        15  12 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_HXX
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 HXX           CL2    CL   CL        0.000      0.000    0.000    0.000
 HXX           C6     C    CR6       0.000     -1.524    0.832   -0.003
 HXX           C1     C    CR6       0.000     -2.719    0.104    0.032
 HXX           "C1'"  C    C         0.000     -2.690   -1.368    0.067
 HXX           "O2'"  O    OC       -0.500     -2.694   -2.019   -1.001
 HXX           "O1'"  O    OC       -0.500     -2.661   -1.967    1.165
 HXX           C2     C    CR6       0.000     -3.944    0.786    0.023
 HXX           O2     O    OH1       0.000     -5.110    0.092    0.051
 HXX           HO2    H    H         0.000     -5.395   -0.093   -0.854
 HXX           C5     C    CR16      0.000     -1.559    2.210   -0.035
 HXX           H5     H    H         0.000     -0.634    2.773   -0.058
 HXX           C4     C    CR16      0.000     -2.772    2.879   -0.037
 HXX           H4     H    H         0.000     -2.790    3.961   -0.062
 HXX           C3     C    CR6       0.000     -3.959    2.173   -0.009
 HXX           CL1    CL   CL        0.000     -5.473    3.023   -0.013
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 HXX      CL2    n/a    C6     START
 HXX      C6     CL2    C5     .
 HXX      C1     C6     C2     .
 HXX      "C1'"  C1     "O1'"  .
 HXX      "O2'"  "C1'"  .      .
 HXX      "O1'"  "C1'"  .      .
 HXX      C2     C1     O2     .
 HXX      O2     C2     HO2    .
 HXX      HO2    O2     .      .
 HXX      C5     C6     C4     .
 HXX      H5     C5     .      .
 HXX      C4     C5     C3     .
 HXX      H4     C4     .      .
 HXX      C3     C4     CL1    .
 HXX      CL1    C3     .      END
 HXX      C2     C3     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 HXX      C2     C1        double      1.487    0.020
 HXX      O2     C2        single      1.362    0.020
 HXX      C2     C3        single      1.487    0.020
 HXX      C3     C4        double      1.390    0.020
 HXX      CL1    C3        single      1.795    0.020
 HXX      C4     C5        single      1.390    0.020
 HXX      H4     C4        single      1.083    0.020
 HXX      C5     C6        double      1.390    0.020
 HXX      H5     C5        single      1.083    0.020
 HXX      C6     CL2       single      1.795    0.020
 HXX      C1     C6        single      1.487    0.020
 HXX      "O1'"  "C1'"     deloc       1.250    0.020
 HXX      "C1'"  C1        single      1.500    0.020
 HXX      "O2'"  "C1'"     deloc       1.250    0.020
 HXX      HO2    O2        single      0.967    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 HXX      CL2    C6     C1      120.000    3.000
 HXX      CL2    C6     C5      120.000    3.000
 HXX      C1     C6     C5      120.000    3.000
 HXX      C6     C1     "C1'"   120.000    3.000
 HXX      C6     C1     C2      120.000    3.000
 HXX      "C1'"  C1     C2      120.000    3.000
 HXX      C1     "C1'"  "O2'"   120.000    3.000
 HXX      C1     "C1'"  "O1'"   120.000    3.000
 HXX      "O2'"  "C1'"  "O1'"   123.000    3.000
 HXX      C1     C2     O2      120.000    3.000
 HXX      C1     C2     C3      120.000    3.000
 HXX      O2     C2     C3      120.000    3.000
 HXX      C2     O2     HO2     109.470    3.000
 HXX      C6     C5     H5      120.000    3.000
 HXX      C6     C5     C4      120.000    3.000
 HXX      H5     C5     C4      120.000    3.000
 HXX      C5     C4     H4      120.000    3.000
 HXX      C5     C4     C3      120.000    3.000
 HXX      H4     C4     C3      120.000    3.000
 HXX      C4     C3     CL1     120.000    3.000
 HXX      C4     C3     C2      120.000    3.000
 HXX      CL1    C3     C2      120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 HXX      CONST_1  CL2    C6     C1     C2       180.000    0.000   0
 HXX      var_1    C6     C1     "C1'"  "O1'"     89.950   20.000   1
 HXX      CONST_2  C6     C1     C2     O2       180.000    0.000   0
 HXX      CONST_3  C1     C2     C3     C4         0.000    0.000   0
 HXX      var_2    C1     C2     O2     HO2      -90.308   20.000   1
 HXX      CONST_4  CL2    C6     C5     C4       180.000    0.000   0
 HXX      CONST_5  C6     C5     C4     C3         0.000    0.000   0
 HXX      CONST_6  C5     C4     C3     CL1      180.000    0.000   0
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 HXX      plan-1    C2        0.020
 HXX      plan-1    C3        0.020
 HXX      plan-1    C1        0.020
 HXX      plan-1    O2        0.020
 HXX      plan-1    C4        0.020
 HXX      plan-1    C5        0.020
 HXX      plan-1    C6        0.020
 HXX      plan-1    CL1       0.020
 HXX      plan-1    H4        0.020
 HXX      plan-1    H5        0.020
 HXX      plan-1    CL2       0.020
 HXX      plan-1    "C1'"     0.020
 HXX      plan-2    "C1'"     0.020
 HXX      plan-2    "O1'"     0.020
 HXX      plan-2    "O2'"     0.020
 HXX      plan-2    C1        0.020
# ------------------------------------------------------