File: IP4.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (204 lines) | stat: -rw-r--r-- 8,341 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
IP4      IP4 '1-METHYL-2-OXY-5,5-DIMETHYL PYRROLID' non-polymer        22   9 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_IP4
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 IP4           O2     O    O         0.000      0.000    0.000    0.000
 IP4           C2     C    C         0.000     -1.200   -0.007   -0.172
 IP4           C3     C    CH2       0.000     -2.233   -0.024    0.934
 IP4           H31    H    H         0.000     -2.365    0.961    1.386
 IP4           H32    H    H         0.000     -1.987   -0.750    1.712
 IP4           C4     C    CH2       0.000     -3.539   -0.447    0.226
 IP4           H41    H    H         0.000     -4.422    0.068    0.609
 IP4           H42    H    H         0.000     -3.710   -1.526    0.248
 IP4           C5     C    CT        0.000     -3.267    0.002   -1.228
 IP4           CM2    C    CH3       0.000     -3.827    1.407   -1.461
 IP4           HM23   H    H         0.000     -4.872    1.404   -1.290
 IP4           HM22   H    H         0.000     -3.363    2.088   -0.795
 IP4           HM21   H    H         0.000     -3.634    1.704   -2.460
 IP4           CM3    C    CH3       0.000     -3.891   -0.986   -2.214
 IP4           HM33   H    H         0.000     -3.471   -1.947   -2.066
 IP4           HM32   H    H         0.000     -4.938   -1.031   -2.056
 IP4           HM31   H    H         0.000     -3.698   -0.667   -3.206
 IP4           N1     N    N         0.000     -1.807   -0.001   -1.370
 IP4           CM1    C    CH3       0.000     -1.102    0.007   -2.653
 IP4           HM13   H    H         0.000     -1.368   -0.855   -3.210
 IP4           HM12   H    H         0.000     -1.368    0.875   -3.200
 IP4           HM11   H    H         0.000     -0.056    0.006   -2.484
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 IP4      O2     n/a    C2     START
 IP4      C2     O2     C3     .
 IP4      C3     C2     C4     .
 IP4      H31    C3     .      .
 IP4      H32    C3     .      .
 IP4      C4     C3     C5     .
 IP4      H41    C4     .      .
 IP4      H42    C4     .      .
 IP4      C5     C4     N1     .
 IP4      CM2    C5     HM21   .
 IP4      HM23   CM2    .      .
 IP4      HM22   CM2    .      .
 IP4      HM21   CM2    .      .
 IP4      CM3    C5     HM31   .
 IP4      HM33   CM3    .      .
 IP4      HM32   CM3    .      .
 IP4      HM31   CM3    .      .
 IP4      N1     C5     CM1    .
 IP4      CM1    N1     HM11   .
 IP4      HM13   CM1    .      .
 IP4      HM12   CM1    .      .
 IP4      HM11   CM1    .      END
 IP4      N1     C2     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 IP4      N1     C2        single      1.330    0.020
 IP4      N1     C5        single      1.455    0.020
 IP4      CM1    N1        single      1.455    0.020
 IP4      C2     O2        double      1.220    0.020
 IP4      C3     C2        single      1.510    0.020
 IP4      C4     C3        single      1.524    0.020
 IP4      H31    C3        single      1.092    0.020
 IP4      H32    C3        single      1.092    0.020
 IP4      C5     C4        single      1.524    0.020
 IP4      H41    C4        single      1.092    0.020
 IP4      H42    C4        single      1.092    0.020
 IP4      CM2    C5        single      1.524    0.020
 IP4      CM3    C5        single      1.524    0.020
 IP4      HM11   CM1       single      1.059    0.020
 IP4      HM12   CM1       single      1.059    0.020
 IP4      HM13   CM1       single      1.059    0.020
 IP4      HM21   CM2       single      1.059    0.020
 IP4      HM22   CM2       single      1.059    0.020
 IP4      HM23   CM2       single      1.059    0.020
 IP4      HM31   CM3       single      1.059    0.020
 IP4      HM32   CM3       single      1.059    0.020
 IP4      HM33   CM3       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 IP4      O2     C2     C3      120.500    3.000
 IP4      O2     C2     N1      123.000    3.000
 IP4      C3     C2     N1      116.500    3.000
 IP4      C2     C3     H31     109.470    3.000
 IP4      C2     C3     H32     109.470    3.000
 IP4      C2     C3     C4      109.470    3.000
 IP4      H31    C3     H32     107.900    3.000
 IP4      H31    C3     C4      109.470    3.000
 IP4      H32    C3     C4      109.470    3.000
 IP4      C3     C4     H41     109.470    3.000
 IP4      C3     C4     H42     109.470    3.000
 IP4      C3     C4     C5      111.000    3.000
 IP4      H41    C4     H42     107.900    3.000
 IP4      H41    C4     C5      109.470    3.000
 IP4      H42    C4     C5      109.470    3.000
 IP4      C4     C5     CM2     111.000    3.000
 IP4      C4     C5     CM3     111.000    3.000
 IP4      C4     C5     N1      111.600    3.000
 IP4      CM2    C5     CM3     111.000    3.000
 IP4      CM2    C5     N1      111.600    3.000
 IP4      CM3    C5     N1      111.600    3.000
 IP4      C5     CM2    HM23    109.470    3.000
 IP4      C5     CM2    HM22    109.470    3.000
 IP4      C5     CM2    HM21    109.470    3.000
 IP4      HM23   CM2    HM22    109.470    3.000
 IP4      HM23   CM2    HM21    109.470    3.000
 IP4      HM22   CM2    HM21    109.470    3.000
 IP4      C5     CM3    HM33    109.470    3.000
 IP4      C5     CM3    HM32    109.470    3.000
 IP4      C5     CM3    HM31    109.470    3.000
 IP4      HM33   CM3    HM32    109.470    3.000
 IP4      HM33   CM3    HM31    109.470    3.000
 IP4      HM32   CM3    HM31    109.470    3.000
 IP4      C5     N1     CM1     120.000    3.000
 IP4      C5     N1     C2      121.000    3.000
 IP4      CM1    N1     C2      127.000    3.000
 IP4      N1     CM1    HM13    109.470    3.000
 IP4      N1     CM1    HM12    109.470    3.000
 IP4      N1     CM1    HM11    109.470    3.000
 IP4      HM13   CM1    HM12    109.470    3.000
 IP4      HM13   CM1    HM11    109.470    3.000
 IP4      HM12   CM1    HM11    109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 IP4      var_1    O2     C2     C3     C4      -150.000   20.000   3
 IP4      var_2    C2     C3     C4     C5       -30.000   20.000   3
 IP4      var_3    C3     C4     C5     N1        30.000   20.000   1
 IP4      var_4    C4     C5     CM2    HM21     179.942   20.000   1
 IP4      var_5    C4     C5     CM3    HM31    -179.979   20.000   1
 IP4      var_6    C4     C5     N1     CM1      150.000   20.000   1
 IP4      CONST_1  C5     N1     C2     O2       180.000    0.000   0
 IP4      var_7    C5     N1     CM1    HM11     179.777   20.000   1
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 IP4      chir_01  C5     N1     C4     CM2       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 IP4      plan-1    N1        0.020
 IP4      plan-1    C2        0.020
 IP4      plan-1    C5        0.020
 IP4      plan-1    CM1       0.020
 IP4      plan-2    C2        0.020
 IP4      plan-2    N1        0.020
 IP4      plan-2    O2        0.020
 IP4      plan-2    C3        0.020
# ------------------------------------------------------