File: IS2.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (231 lines) | stat: -rw-r--r-- 9,844 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
IS2      IS2 '[(4-ETHYLPHENYL)AMINO]CARBONYLPHOSPH' non-polymer        27  15 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_IS2
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 IS2           O17    O    O         0.000      0.000    0.000    0.000
 IS2           P14    P    P         0.000     -1.080    0.701   -0.729
 IS2           O15    O    OH1       0.000     -1.022    0.301   -2.287
 IS2           H15    H    H         0.000     -0.228    0.491   -2.805
 IS2           O16    O    OH1       0.000     -0.886    2.291   -0.576
 IS2           H16    H    H         0.000     -1.511    2.897   -0.996
 IS2           C12    C    C         0.000     -2.687    0.219   -0.039
 IS2           O13    O    O         0.000     -3.513   -0.319   -0.747
 IS2           N11    N    NH1       0.000     -2.962    0.455    1.257
 IS2           H11    H    H         0.000     -2.244    0.820    1.867
 IS2           C4     C    CR6       0.000     -4.241    0.196    1.760
 IS2           C3     C    CR16      0.000     -5.360    0.447    0.978
 IS2           H3     H    H         0.000     -5.244    0.846   -0.022
 IS2           C2     C    CR16      0.000     -6.621    0.189    1.478
 IS2           H2     H    H         0.000     -7.495    0.385    0.867
 IS2           C5     C    CR16      0.000     -4.395   -0.313    3.042
 IS2           H5     H    H         0.000     -3.524   -0.514    3.654
 IS2           C6     C    CR16      0.000     -5.659   -0.564    3.538
 IS2           H6     H    H         0.000     -5.780   -0.953    4.541
 IS2           C1     C    CR6       0.000     -6.772   -0.318    2.754
 IS2           C18    C    CH2       0.000     -8.150   -0.597    3.297
 IS2           H181   H    H         0.000     -8.864    0.098    2.851
 IS2           H182   H    H         0.000     -8.146   -0.468    4.381
 IS2           C19    C    CH3       0.000     -8.550   -2.033    2.955
 IS2           H193   H    H         0.000     -8.553   -2.161    1.902
 IS2           H192   H    H         0.000     -7.859   -2.709    3.389
 IS2           H191   H    H         0.000     -9.520   -2.232    3.334
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 IS2      O17    n/a    P14    START
 IS2      P14    O17    C12    .
 IS2      O15    P14    H15    .
 IS2      H15    O15    .      .
 IS2      O16    P14    H16    .
 IS2      H16    O16    .      .
 IS2      C12    P14    N11    .
 IS2      O13    C12    .      .
 IS2      N11    C12    C4     .
 IS2      H11    N11    .      .
 IS2      C4     N11    C5     .
 IS2      C3     C4     C2     .
 IS2      H3     C3     .      .
 IS2      C2     C3     H2     .
 IS2      H2     C2     .      .
 IS2      C5     C4     C6     .
 IS2      H5     C5     .      .
 IS2      C6     C5     C1     .
 IS2      H6     C6     .      .
 IS2      C1     C6     C18    .
 IS2      C18    C1     C19    .
 IS2      H181   C18    .      .
 IS2      H182   C18    .      .
 IS2      C19    C18    H191   .
 IS2      H193   C19    .      .
 IS2      H192   C19    .      .
 IS2      H191   C19    .      END
 IS2      C1     C2     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 IS2      C1     C2        single      1.390    0.020
 IS2      C1     C6        double      1.390    0.020
 IS2      C18    C1        single      1.511    0.020
 IS2      C2     C3        double      1.390    0.020
 IS2      H2     C2        single      1.083    0.020
 IS2      C3     C4        single      1.390    0.020
 IS2      H3     C3        single      1.083    0.020
 IS2      C5     C4        double      1.390    0.020
 IS2      C4     N11       single      1.350    0.020
 IS2      C6     C5        single      1.390    0.020
 IS2      H5     C5        single      1.083    0.020
 IS2      H6     C6        single      1.083    0.020
 IS2      N11    C12       single      1.330    0.020
 IS2      H11    N11       single      1.010    0.020
 IS2      O13    C12       double      1.220    0.020
 IS2      C12    P14       single      1.715    0.020
 IS2      O15    P14       single      1.610    0.020
 IS2      O16    P14       single      1.610    0.020
 IS2      P14    O17       double      1.480    0.020
 IS2      H15    O15       single      0.967    0.020
 IS2      H16    O16       single      0.967    0.020
 IS2      C19    C18       single      1.513    0.020
 IS2      H181   C18       single      1.092    0.020
 IS2      H182   C18       single      1.092    0.020
 IS2      H191   C19       single      1.059    0.020
 IS2      H192   C19       single      1.059    0.020
 IS2      H193   C19       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 IS2      O17    P14    O15     109.500    3.000
 IS2      O17    P14    O16     109.500    3.000
 IS2      O17    P14    C12     109.500    3.000
 IS2      O15    P14    O16     109.500    3.000
 IS2      O15    P14    C12     109.500    3.000
 IS2      O16    P14    C12     109.500    3.000
 IS2      P14    O15    H15     120.000    3.000
 IS2      P14    O16    H16     120.000    3.000
 IS2      P14    C12    O13     120.000    3.000
 IS2      P14    C12    N11     120.000    3.000
 IS2      O13    C12    N11     123.000    3.000
 IS2      C12    N11    H11     120.000    3.000
 IS2      C12    N11    C4      120.000    3.000
 IS2      H11    N11    C4      120.000    3.000
 IS2      N11    C4     C3      120.000    3.000
 IS2      N11    C4     C5      120.000    3.000
 IS2      C3     C4     C5      120.000    3.000
 IS2      C4     C3     H3      120.000    3.000
 IS2      C4     C3     C2      120.000    3.000
 IS2      H3     C3     C2      120.000    3.000
 IS2      C3     C2     H2      120.000    3.000
 IS2      C3     C2     C1      120.000    3.000
 IS2      H2     C2     C1      120.000    3.000
 IS2      C4     C5     H5      120.000    3.000
 IS2      C4     C5     C6      120.000    3.000
 IS2      H5     C5     C6      120.000    3.000
 IS2      C5     C6     H6      120.000    3.000
 IS2      C5     C6     C1      120.000    3.000
 IS2      H6     C6     C1      120.000    3.000
 IS2      C6     C1     C18     120.000    3.000
 IS2      C6     C1     C2      120.000    3.000
 IS2      C18    C1     C2      120.000    3.000
 IS2      C1     C18    H181    109.470    3.000
 IS2      C1     C18    H182    109.470    3.000
 IS2      C1     C18    C19     109.500    3.000
 IS2      H181   C18    H182    107.900    3.000
 IS2      H181   C18    C19     109.470    3.000
 IS2      H182   C18    C19     109.470    3.000
 IS2      C18    C19    H193    109.470    3.000
 IS2      C18    C19    H192    109.470    3.000
 IS2      C18    C19    H191    109.470    3.000
 IS2      H193   C19    H192    109.470    3.000
 IS2      H193   C19    H191    109.470    3.000
 IS2      H192   C19    H191    109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 IS2      var_1    O17    P14    O15    H15      -59.991   20.000   1
 IS2      var_2    O17    P14    O16    H16     -179.964   20.000   1
 IS2      var_3    O17    P14    C12    N11       59.886   20.000   1
 IS2      CONST_1  P14    C12    N11    C4       180.000    0.000   0
 IS2      var_4    C12    N11    C4     C5       142.830   20.000   1
 IS2      CONST_2  N11    C4     C3     C2       180.000    0.000   0
 IS2      CONST_3  C4     C3     C2     C1         0.000    0.000   0
 IS2      CONST_4  N11    C4     C5     C6       180.000    0.000   0
 IS2      CONST_5  C4     C5     C6     C1         0.000    0.000   0
 IS2      CONST_6  C5     C6     C1     C18      180.000    0.000   0
 IS2      CONST_7  C6     C1     C2     C3         0.000    0.000   0
 IS2      var_5    C6     C1     C18    C19      -90.340   20.000   2
 IS2      var_6    C1     C18    C19    H191    -179.913   20.000   3
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 IS2      plan-1    C1        0.020
 IS2      plan-1    C2        0.020
 IS2      plan-1    C6        0.020
 IS2      plan-1    C18       0.020
 IS2      plan-1    C3        0.020
 IS2      plan-1    C4        0.020
 IS2      plan-1    C5        0.020
 IS2      plan-1    H2        0.020
 IS2      plan-1    H3        0.020
 IS2      plan-1    N11       0.020
 IS2      plan-1    H5        0.020
 IS2      plan-1    H6        0.020
 IS2      plan-1    H11       0.020
 IS2      plan-2    N11       0.020
 IS2      plan-2    C4        0.020
 IS2      plan-2    C12       0.020
 IS2      plan-2    H11       0.020
 IS2      plan-3    C12       0.020
 IS2      plan-3    N11       0.020
 IS2      plan-3    O13       0.020
 IS2      plan-3    P14       0.020
 IS2      plan-3    H11       0.020
# ------------------------------------------------------