File: JIN.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (360 lines) | stat: -rw-r--r-- 16,339 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
JIN      JIN '6-(2,6-DICHLOROPHENYL)-2-[(4-FLUORO-' non-polymer        44  29 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_JIN
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 JIN           CL5    CL   CL        0.000      0.000    0.000    0.000
 JIN           C20    C    CR6       0.000      0.103   -1.717    0.192
 JIN           C15    C    CR16      0.000      1.329   -2.327   -0.076
 JIN           H15    H    H         0.000      2.174   -1.728   -0.391
 JIN           C19    C    CR6       0.000     -0.992   -2.485    0.599
 JIN           C18    C    CR6       0.000     -0.849   -3.869    0.737
 JIN           CL4    CL   CL        0.000     -2.161   -4.882    1.235
 JIN           C17    C    CR16      0.000      0.377   -4.480    0.469
 JIN           H17    H    H         0.000      0.482   -5.552    0.575
 JIN           C16    C    CR16      0.000      1.466   -3.708    0.063
 JIN           H16    H    H         0.000      2.417   -4.182   -0.145
 JIN           C09    C    CR6       0.000     -2.288   -1.839    0.883
 JIN           C12    C    CR6       0.000     -2.620   -1.365    2.270
 JIN           O14    O    O         0.000     -1.782   -1.493    3.164
 JIN           N11    N    NR6       0.000     -3.879   -0.790    2.458
 JIN           C13    C    CH3       0.000     -4.277   -0.310    3.779
 JIN           H133   H    H         0.000     -3.497   -0.494    4.470
 JIN           H132   H    H         0.000     -4.471    0.729    3.731
 JIN           H131   H    H         0.000     -5.152   -0.820    4.089
 JIN           C06    C    CR66      0.000     -4.824   -0.637    1.399
 JIN           C01    C    CR66      0.000     -4.470   -1.082    0.134
 JIN           C02    C    CR16      0.000     -5.414   -0.914   -0.868
 JIN           H02    H    H         0.000     -5.165   -1.254   -1.865
 JIN           N03    N    NRD6      0.000     -6.623   -0.352   -0.671
 JIN           C10    C    CR16      0.000     -3.178   -1.696   -0.110
 JIN           H10    H    H         0.000     -2.930   -2.043   -1.106
 JIN           N05    N    NRD6      0.000     -6.027   -0.065    1.643
 JIN           C04    C    CR6       0.000     -6.861    0.044    0.590
 JIN           N08    N    NH1       0.000     -8.116    0.639    0.840
 JIN           HN08   H    H         0.000     -8.706    0.700    0.022
 JIN           C27    C    CR6       0.000     -8.708    1.164    2.005
 JIN           C26    C    CR16      0.000     -9.628    2.208    1.912
 JIN           H26    H    H         0.000     -9.889    2.615    0.942
 JIN           C31    C    CR16      0.000    -10.214    2.729    3.066
 JIN           H31    H    H         0.000    -10.930    3.539    2.992
 JIN           C28    C    CR16      0.000     -8.373    0.643    3.257
 JIN           H28    H    H         0.000     -7.658   -0.167    3.332
 JIN           C29    C    CR6       0.000     -8.958    1.164    4.410
 JIN           C34    C    CH3       0.000     -8.598    0.603    5.744
 JIN           H343   H    H         0.000     -9.325   -0.110    6.031
 JIN           H342   H    H         0.000     -7.649    0.139    5.684
 JIN           H341   H    H         0.000     -8.567    1.385    6.456
 JIN           C30    C    CR6       0.000     -9.878    2.207    4.316
 JIN           F35    F    F         0.000    -10.447    2.715    5.418
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 JIN      CL5    n/a    C20    START
 JIN      C20    CL5    C19    .
 JIN      C15    C20    H15    .
 JIN      H15    C15    .      .
 JIN      C19    C20    C09    .
 JIN      C18    C19    C17    .
 JIN      CL4    C18    .      .
 JIN      C17    C18    C16    .
 JIN      H17    C17    .      .
 JIN      C16    C17    H16    .
 JIN      H16    C16    .      .
 JIN      C09    C19    C12    .
 JIN      C12    C09    N11    .
 JIN      O14    C12    .      .
 JIN      N11    C12    C06    .
 JIN      C13    N11    H131   .
 JIN      H133   C13    .      .
 JIN      H132   C13    .      .
 JIN      H131   C13    .      .
 JIN      C06    N11    N05    .
 JIN      C01    C06    C10    .
 JIN      C02    C01    N03    .
 JIN      H02    C02    .      .
 JIN      N03    C02    .      .
 JIN      C10    C01    H10    .
 JIN      H10    C10    .      .
 JIN      N05    C06    C04    .
 JIN      C04    N05    N08    .
 JIN      N08    C04    C27    .
 JIN      HN08   N08    .      .
 JIN      C27    N08    C28    .
 JIN      C26    C27    C31    .
 JIN      H26    C26    .      .
 JIN      C31    C26    H31    .
 JIN      H31    C31    .      .
 JIN      C28    C27    C29    .
 JIN      H28    C28    .      .
 JIN      C29    C28    C30    .
 JIN      C34    C29    H341   .
 JIN      H343   C34    .      .
 JIN      H342   C34    .      .
 JIN      H341   C34    .      .
 JIN      C30    C29    F35    .
 JIN      F35    C30    .      END
 JIN      C10    C09    .    ADD
 JIN      C15    C16    .    ADD
 JIN      C30    C31    .    ADD
 JIN      C04    N03    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 JIN      C10    C01       single      1.390    0.020
 JIN      C10    C09       double      1.390    0.020
 JIN      H10    C10       single      1.083    0.020
 JIN      C12    C09       single      1.487    0.020
 JIN      N11    C12       single      1.410    0.020
 JIN      O14    C12       double      1.250    0.020
 JIN      C13    N11       single      1.465    0.020
 JIN      H131   C13       single      1.059    0.020
 JIN      H132   C13       single      1.059    0.020
 JIN      H133   C13       single      1.059    0.020
 JIN      C15    C16       double      1.390    0.020
 JIN      C15    C20       single      1.390    0.020
 JIN      H15    C15       single      1.083    0.020
 JIN      C16    C17       single      1.390    0.020
 JIN      H16    C16       single      1.083    0.020
 JIN      C18    C19       single      1.487    0.020
 JIN      C09    C19       single      1.487    0.020
 JIN      C19    C20       double      1.487    0.020
 JIN      C20    CL5       single      1.795    0.020
 JIN      C28    C27       single      1.390    0.020
 JIN      C27    N08       single      1.350    0.020
 JIN      C26    C27       double      1.390    0.020
 JIN      C30    C29       single      1.487    0.020
 JIN      F35    C30       single      1.345    0.020
 JIN      C30    C31       double      1.390    0.020
 JIN      C31    C26       single      1.390    0.020
 JIN      H31    C31       single      1.083    0.020
 JIN      C34    C29       single      1.506    0.020
 JIN      H341   C34       single      1.059    0.020
 JIN      H342   C34       single      1.059    0.020
 JIN      H343   C34       single      1.059    0.020
 JIN      C29    C28       double      1.390    0.020
 JIN      H28    C28       single      1.083    0.020
 JIN      H26    C26       single      1.083    0.020
 JIN      N08    C04       single      1.350    0.020
 JIN      HN08   N08       single      1.010    0.020
 JIN      C04    N03       single      1.350    0.020
 JIN      C04    N05       double      1.350    0.020
 JIN      N03    C02       double      1.337    0.020
 JIN      C02    C01       single      1.390    0.020
 JIN      H02    C02       single      1.083    0.020
 JIN      N05    C06       single      1.350    0.020
 JIN      C01    C06       double      1.490    0.020
 JIN      C06    N11       single      1.410    0.020
 JIN      CL4    C18       single      1.795    0.020
 JIN      C17    C18       double      1.390    0.020
 JIN      H17    C17       single      1.083    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 JIN      CL5    C20    C15     120.000    3.000
 JIN      CL5    C20    C19     120.000    3.000
 JIN      C15    C20    C19     120.000    3.000
 JIN      C20    C15    H15     120.000    3.000
 JIN      C20    C15    C16     120.000    3.000
 JIN      H15    C15    C16     120.000    3.000
 JIN      C20    C19    C18     120.000    3.000
 JIN      C20    C19    C09     120.000    3.000
 JIN      C18    C19    C09     120.000    3.000
 JIN      C19    C18    CL4     120.000    3.000
 JIN      C19    C18    C17     120.000    3.000
 JIN      CL4    C18    C17     120.000    3.000
 JIN      C18    C17    H17     120.000    3.000
 JIN      C18    C17    C16     120.000    3.000
 JIN      H17    C17    C16     120.000    3.000
 JIN      C17    C16    H16     120.000    3.000
 JIN      C17    C16    C15     120.000    3.000
 JIN      H16    C16    C15     120.000    3.000
 JIN      C19    C09    C12     120.000    3.000
 JIN      C19    C09    C10     120.000    3.000
 JIN      C12    C09    C10     120.000    3.000
 JIN      C09    C12    O14     120.000    3.000
 JIN      C09    C12    N11     120.000    3.000
 JIN      O14    C12    N11     120.000    3.000
 JIN      C12    N11    C13     120.000    3.000
 JIN      C12    N11    C06     120.000    3.000
 JIN      C13    N11    C06     120.000    3.000
 JIN      N11    C13    H133    109.470    3.000
 JIN      N11    C13    H132    109.470    3.000
 JIN      N11    C13    H131    109.470    3.000
 JIN      H133   C13    H132    109.470    3.000
 JIN      H133   C13    H131    109.470    3.000
 JIN      H132   C13    H131    109.470    3.000
 JIN      N11    C06    C01     120.000    3.000
 JIN      N11    C06    N05     120.000    3.000
 JIN      C01    C06    N05     120.000    3.000
 JIN      C06    C01    C02     120.000    3.000
 JIN      C06    C01    C10     120.000    3.000
 JIN      C02    C01    C10     120.000    3.000
 JIN      C01    C02    H02     120.000    3.000
 JIN      C01    C02    N03     120.000    3.000
 JIN      H02    C02    N03     120.000    3.000
 JIN      C02    N03    C04     120.000    3.000
 JIN      C01    C10    H10     120.000    3.000
 JIN      C01    C10    C09     120.000    3.000
 JIN      H10    C10    C09     120.000    3.000
 JIN      C06    N05    C04     120.000    3.000
 JIN      N05    C04    N08     120.000    3.000
 JIN      N05    C04    N03     120.000    3.000
 JIN      N08    C04    N03     120.000    3.000
 JIN      C04    N08    HN08    120.000    3.000
 JIN      C04    N08    C27     120.000    3.000
 JIN      HN08   N08    C27     120.000    3.000
 JIN      N08    C27    C26     120.000    3.000
 JIN      N08    C27    C28     120.000    3.000
 JIN      C26    C27    C28     120.000    3.000
 JIN      C27    C26    H26     120.000    3.000
 JIN      C27    C26    C31     120.000    3.000
 JIN      H26    C26    C31     120.000    3.000
 JIN      C26    C31    H31     120.000    3.000
 JIN      C26    C31    C30     120.000    3.000
 JIN      H31    C31    C30     120.000    3.000
 JIN      C27    C28    H28     120.000    3.000
 JIN      C27    C28    C29     120.000    3.000
 JIN      H28    C28    C29     120.000    3.000
 JIN      C28    C29    C34     120.000    3.000
 JIN      C28    C29    C30     120.000    3.000
 JIN      C34    C29    C30     120.000    3.000
 JIN      C29    C34    H343    109.470    3.000
 JIN      C29    C34    H342    109.470    3.000
 JIN      C29    C34    H341    109.470    3.000
 JIN      H343   C34    H342    109.470    3.000
 JIN      H343   C34    H341    109.470    3.000
 JIN      H342   C34    H341    109.470    3.000
 JIN      C29    C30    F35     120.000    3.000
 JIN      C29    C30    C31     120.000    3.000
 JIN      F35    C30    C31     120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 JIN      CONST_1  CL5    C20    C15    C16      180.000    0.000   0
 JIN      CONST_2  C20    C15    C16    C17        0.000    0.000   0
 JIN      CONST_3  CL5    C20    C19    C09        0.000    0.000   0
 JIN      CONST_4  C20    C19    C18    C17        0.000    0.000   0
 JIN      CONST_5  C19    C18    C17    C16        0.000    0.000   0
 JIN      CONST_6  C18    C17    C16    C15        0.000    0.000   0
 JIN      CONST_7  C20    C19    C09    C12      180.000    0.000   0
 JIN      CONST_8  C19    C09    C12    N11      180.000    0.000   0
 JIN      CONST_9  C09    C12    N11    C06        0.000    0.000   0
 JIN      var_1    C12    N11    C13    H131    -120.936   20.000   1
 JIN      CONST_10 C12    N11    C06    N05      180.000    0.000   0
 JIN      CONST_11 N11    C06    C01    C10        0.000    0.000   0
 JIN      CONST_12 C06    C01    C02    N03        0.000    0.000   0
 JIN      CONST_13 C01    C02    N03    C04        0.000    0.000   0
 JIN      CONST_14 C06    C01    C10    C09        0.000    0.000   0
 JIN      CONST_15 C01    C10    C09    C19      180.000    0.000   0
 JIN      CONST_16 N11    C06    N05    C04      180.000    0.000   0
 JIN      CONST_17 C06    N05    C04    N08      180.000    0.000   0
 JIN      CONST_18 N05    C04    N03    C02        0.000    0.000   0
 JIN      var_2    N05    C04    N08    C27       -0.048   20.000   1
 JIN      var_3    C04    N08    C27    C28      -29.900   20.000   1
 JIN      CONST_19 N08    C27    C26    C31      180.000    0.000   0
 JIN      CONST_20 C27    C26    C31    C30        0.000    0.000   0
 JIN      CONST_21 N08    C27    C28    C29      180.000    0.000   0
 JIN      CONST_22 C27    C28    C29    C30        0.000    0.000   0
 JIN      var_4    C28    C29    C34    H341     143.282   20.000   1
 JIN      CONST_23 C28    C29    C30    F35      180.000    0.000   0
 JIN      CONST_24 C29    C30    C31    C26        0.000    0.000   0
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 JIN      plan-1    C10       0.020
 JIN      plan-1    C09       0.020
 JIN      plan-1    C01       0.020
 JIN      plan-1    H10       0.020
 JIN      plan-1    C12       0.020
 JIN      plan-1    N11       0.020
 JIN      plan-1    O14       0.020
 JIN      plan-1    C13       0.020
 JIN      plan-1    C06       0.020
 JIN      plan-1    C19       0.020
 JIN      plan-1    C02       0.020
 JIN      plan-1    C04       0.020
 JIN      plan-1    N03       0.020
 JIN      plan-1    N05       0.020
 JIN      plan-1    N08       0.020
 JIN      plan-1    H02       0.020
 JIN      plan-1    HN08      0.020
 JIN      plan-2    C15       0.020
 JIN      plan-2    C16       0.020
 JIN      plan-2    C20       0.020
 JIN      plan-2    H15       0.020
 JIN      plan-2    C19       0.020
 JIN      plan-2    C18       0.020
 JIN      plan-2    C17       0.020
 JIN      plan-2    H16       0.020
 JIN      plan-2    C09       0.020
 JIN      plan-2    CL5       0.020
 JIN      plan-2    CL4       0.020
 JIN      plan-2    H17       0.020
 JIN      plan-3    C27       0.020
 JIN      plan-3    C28       0.020
 JIN      plan-3    C26       0.020
 JIN      plan-3    N08       0.020
 JIN      plan-3    C30       0.020
 JIN      plan-3    C31       0.020
 JIN      plan-3    C29       0.020
 JIN      plan-3    F35       0.020
 JIN      plan-3    H31       0.020
 JIN      plan-3    C34       0.020
 JIN      plan-3    H28       0.020
 JIN      plan-3    H26       0.020
 JIN      plan-3    HN08      0.020
 JIN      plan-4    N08       0.020
 JIN      plan-4    C27       0.020
 JIN      plan-4    C04       0.020
 JIN      plan-4    HN08      0.020
# ------------------------------------------------------