File: JZ1.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (180 lines) | stat: -rw-r--r-- 7,295 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
JZ1      JZ1 '2-ethylphenol                       ' non-polymer        19   9 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_JZ1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 JZ1           OAB    O    OH1       0.000      0.000    0.000    0.000
 JZ1           HOAB   H    H         0.000      0.320    0.079   -0.909
 JZ1           C10    C    CR6       0.000     -1.357    0.072    0.009
 JZ1           C9     C    CR16      0.000     -2.114   -1.084   -0.113
 JZ1           H9     H    H         0.000     -1.625   -2.045   -0.216
 JZ1           C8     C    CR16      0.000     -3.494   -1.008   -0.103
 JZ1           H8     H    H         0.000     -4.086   -1.910   -0.197
 JZ1           C12    C    CR6       0.000     -1.987    1.301    0.140
 JZ1           C13    C    CH2       0.000     -1.167    2.558    0.273
 JZ1           H13    H    H         0.000     -0.262    2.343    0.844
 JZ1           H13A   H    H         0.000     -1.752    3.320    0.793
 JZ1           C14    C    CH3       0.000     -0.785    3.068   -1.119
 JZ1           H14B   H    H         0.000     -1.663    3.278   -1.676
 JZ1           H14A   H    H         0.000     -0.207    3.953   -1.030
 JZ1           H14    H    H         0.000     -0.217    2.330   -1.626
 JZ1           C11    C    CR16      0.000     -3.366    1.370    0.149
 JZ1           H11    H    H         0.000     -3.859    2.330    0.251
 JZ1           C7     C    CR16      0.000     -4.119    0.218    0.027
 JZ1           H7     H    H         0.000     -5.201    0.275    0.033
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 JZ1      OAB    n/a    C10    START
 JZ1      HOAB   OAB    .      .
 JZ1      C10    OAB    C12    .
 JZ1      C9     C10    C8     .
 JZ1      H9     C9     .      .
 JZ1      C8     C9     H8     .
 JZ1      H8     C8     .      .
 JZ1      C12    C10    C11    .
 JZ1      C13    C12    C14    .
 JZ1      H13    C13    .      .
 JZ1      H13A   C13    .      .
 JZ1      C14    C13    H14    .
 JZ1      H14B   C14    .      .
 JZ1      H14A   C14    .      .
 JZ1      H14    C14    .      .
 JZ1      C11    C12    C7     .
 JZ1      H11    C11    .      .
 JZ1      C7     C11    H7     .
 JZ1      H7     C7     .      END
 JZ1      C7     C8     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 JZ1      C7     C8        double      1.390    0.020
 JZ1      C7     C11       single      1.390    0.020
 JZ1      C8     C9        single      1.390    0.020
 JZ1      C9     C10       double      1.390    0.020
 JZ1      C12    C10       single      1.487    0.020
 JZ1      C10    OAB       single      1.362    0.020
 JZ1      C11    C12       double      1.390    0.020
 JZ1      C13    C12       single      1.511    0.020
 JZ1      C14    C13       single      1.513    0.020
 JZ1      H7     C7        single      1.083    0.020
 JZ1      H8     C8        single      1.083    0.020
 JZ1      H9     C9        single      1.083    0.020
 JZ1      H11    C11       single      1.083    0.020
 JZ1      H13    C13       single      1.092    0.020
 JZ1      H13A   C13       single      1.092    0.020
 JZ1      H14    C14       single      1.059    0.020
 JZ1      H14A   C14       single      1.059    0.020
 JZ1      H14B   C14       single      1.059    0.020
 JZ1      HOAB   OAB       single      0.967    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 JZ1      HOAB   OAB    C10     109.470    3.000
 JZ1      OAB    C10    C9      120.000    3.000
 JZ1      OAB    C10    C12     120.000    3.000
 JZ1      C9     C10    C12     120.000    3.000
 JZ1      C10    C9     H9      120.000    3.000
 JZ1      C10    C9     C8      120.000    3.000
 JZ1      H9     C9     C8      120.000    3.000
 JZ1      C9     C8     H8      120.000    3.000
 JZ1      C9     C8     C7      120.000    3.000
 JZ1      H8     C8     C7      120.000    3.000
 JZ1      C10    C12    C13     120.000    3.000
 JZ1      C10    C12    C11     120.000    3.000
 JZ1      C13    C12    C11     120.000    3.000
 JZ1      C12    C13    H13     109.470    3.000
 JZ1      C12    C13    H13A    109.470    3.000
 JZ1      C12    C13    C14     109.500    3.000
 JZ1      H13    C13    H13A    107.900    3.000
 JZ1      H13    C13    C14     109.470    3.000
 JZ1      H13A   C13    C14     109.470    3.000
 JZ1      C13    C14    H14B    109.470    3.000
 JZ1      C13    C14    H14A    109.470    3.000
 JZ1      C13    C14    H14     109.470    3.000
 JZ1      H14B   C14    H14A    109.470    3.000
 JZ1      H14B   C14    H14     109.470    3.000
 JZ1      H14A   C14    H14     109.470    3.000
 JZ1      C12    C11    H11     120.000    3.000
 JZ1      C12    C11    C7      120.000    3.000
 JZ1      H11    C11    C7      120.000    3.000
 JZ1      C11    C7     H7      120.000    3.000
 JZ1      C11    C7     C8      120.000    3.000
 JZ1      H7     C7     C8      120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 JZ1      var_1    HOAB   OAB    C10    C12      -90.011   20.000   1
 JZ1      CONST_1  OAB    C10    C9     C8       180.000    0.000   0
 JZ1      CONST_2  C10    C9     C8     C7         0.000    0.000   0
 JZ1      CONST_3  OAB    C10    C12    C11      180.000    0.000   0
 JZ1      var_2    C10    C12    C13    C14       84.993   20.000   2
 JZ1      var_3    C12    C13    C14    H14      -59.961   20.000   3
 JZ1      CONST_4  C10    C12    C11    C7         0.000    0.000   0
 JZ1      CONST_5  C12    C11    C7     C8         0.000    0.000   0
 JZ1      CONST_6  C11    C7     C8     C9         0.000    0.000   0
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 JZ1      plan-1    C7        0.020
 JZ1      plan-1    C8        0.020
 JZ1      plan-1    C11       0.020
 JZ1      plan-1    H7        0.020
 JZ1      plan-1    C9        0.020
 JZ1      plan-1    C10       0.020
 JZ1      plan-1    C12       0.020
 JZ1      plan-1    H8        0.020
 JZ1      plan-1    H9        0.020
 JZ1      plan-1    OAB       0.020
 JZ1      plan-1    H11       0.020
 JZ1      plan-1    C13       0.020
# ------------------------------------------------------