File: MM1.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (309 lines) | stat: -rw-r--r-- 14,115 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
MM1      MM1 '1,4,8,11-TETRAAZA-CYCLOTETRADECANE C' non-polymer        39  15 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_MM1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 MM1           H14    H    H         0.000        NaN      NaN      NaN
 MM1           N14    N    NT1       0.000   ******** ******** ********
 MM1           CU1    CU   CU        0.000   ******** ******** ********
 MM1           C1     C    CH2       0.000   ******** ******** ********
 MM1           H12    H    H         0.000   ******** ******** ********
 MM1           H11A   H    H         0.000   ******** ******** ********
 MM1           C13    C    CH2       0.000   ******** ******** ********
 MM1           H131   H    H         0.000   ******** ******** ********
 MM1           H132   H    H         0.000   ******** ******** ********
 MM1           C12    C    CH2       0.000   ******** ******** ********
 MM1           H121   H    H         0.000   ******** ******** ********
 MM1           H122   H    H         0.000   ******** ******** ********
 MM1           N11    N    NT1       0.000   ******** ******** ********
 MM1           H11    H    H         0.000        NaN      NaN      NaN
 MM1           C10    C    CH2       0.000   ******** ******** ********
 MM1           H101   H    H         0.000   ******** ******** ********
 MM1           H102   H    H         0.000   ******** ******** ********
 MM1           C9     C    CH2       0.000   ******** ******** ********
 MM1           H91    H    H         0.000   ******** ******** ********
 MM1           H92    H    H         0.000   ******** ******** ********
 MM1           C8     C    CH2       0.000   ******** ******** ********
 MM1           H81    H    H         0.000   ******** ******** ********
 MM1           H82    H    H         0.000   ******** ******** ********
 MM1           N7     N    NT1       0.000   ******** ******** ********
 MM1           HN7    H    H         0.000        NaN      NaN      NaN
 MM1           C6     C    CH2       0.000   ******** ******** ********
 MM1           H61    H    H         0.000   ******** ******** ********
 MM1           H62    H    H         0.000   ******** ******** ********
 MM1           C5     C    CH2       0.000   ******** ******** ********
 MM1           H51    H    H         0.000   ******** ******** ********
 MM1           H52    H    H         0.000   ******** ******** ********
 MM1           N4     N    NT1       0.000   ******** ******** ********
 MM1           HN4    H    H         0.000        NaN      NaN      NaN
 MM1           C3     C    CH2       0.000   ******** ******** ********
 MM1           H31    H    H         0.000   ******** ******** ********
 MM1           H32    H    H         0.000   ******** ******** ********
 MM1           C2     C    CH2       0.000   ******** ******** ********
 MM1           H22    H    H         0.000   ******** ******** ********
 MM1           H21    H    H         0.000   ******** ******** ********
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 MM1      H14    n/a    N14    START
 MM1      N14    H14    C13    .
 MM1      CU1    N14    .      .
 MM1      C1     N14    H11A   .
 MM1      H12    C1     .      .
 MM1      H11A   C1     .      .
 MM1      C13    N14    C12    .
 MM1      H131   C13    .      .
 MM1      H132   C13    .      .
 MM1      C12    C13    N11    .
 MM1      H121   C12    .      .
 MM1      H122   C12    .      .
 MM1      N11    C12    C10    .
 MM1      H11    N11    .      .
 MM1      C10    N11    C9     .
 MM1      H101   C10    .      .
 MM1      H102   C10    .      .
 MM1      C9     C10    C8     .
 MM1      H91    C9     .      .
 MM1      H92    C9     .      .
 MM1      C8     C9     N7     .
 MM1      H81    C8     .      .
 MM1      H82    C8     .      .
 MM1      N7     C8     C6     .
 MM1      HN7    N7     .      .
 MM1      C6     N7     C5     .
 MM1      H61    C6     .      .
 MM1      H62    C6     .      .
 MM1      C5     C6     N4     .
 MM1      H51    C5     .      .
 MM1      H52    C5     .      .
 MM1      N4     C5     C3     .
 MM1      HN4    N4     .      .
 MM1      C3     N4     C2     .
 MM1      H31    C3     .      .
 MM1      H32    C3     .      .
 MM1      C2     C3     H21    .
 MM1      H22    C2     .      .
 MM1      H21    C2     .      END
 MM1      CU1    N4     .    ADD
 MM1      CU1    N7     .    ADD
 MM1      CU1    N11    .    ADD
 MM1      C1     C2     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 MM1      CU1    N4        single      2.085    0.020
 MM1      CU1    N7        single      2.085    0.020
 MM1      CU1    N11       single      2.085    0.020
 MM1      CU1    N14       single      2.085    0.020
 MM1      C1     C2        single      1.524    0.020
 MM1      C1     N14       single      1.472    0.020
 MM1      H11A   C1        single      1.092    0.020
 MM1      H12    C1        single      1.092    0.020
 MM1      C2     C3        single      1.524    0.020
 MM1      H21    C2        single      1.092    0.020
 MM1      H22    C2        single      1.092    0.020
 MM1      C3     N4        single      1.472    0.020
 MM1      H31    C3        single      1.092    0.020
 MM1      H32    C3        single      1.092    0.020
 MM1      N4     C5        single      1.472    0.020
 MM1      HN4    N4        single      1.033    0.020
 MM1      C5     C6        single      1.524    0.020
 MM1      H51    C5        single      1.092    0.020
 MM1      H52    C5        single      1.092    0.020
 MM1      C6     N7        single      1.472    0.020
 MM1      H61    C6        single      1.092    0.020
 MM1      H62    C6        single      1.092    0.020
 MM1      N7     C8        single      1.472    0.020
 MM1      HN7    N7        single      1.033    0.020
 MM1      C8     C9        single      1.524    0.020
 MM1      H81    C8        single      1.092    0.020
 MM1      H82    C8        single      1.092    0.020
 MM1      C9     C10       single      1.524    0.020
 MM1      H91    C9        single      1.092    0.020
 MM1      H92    C9        single      1.092    0.020
 MM1      C10    N11       single      1.472    0.020
 MM1      H101   C10       single      1.092    0.020
 MM1      H102   C10       single      1.092    0.020
 MM1      N11    C12       single      1.472    0.020
 MM1      H11    N11       single      1.033    0.020
 MM1      C12    C13       single      1.524    0.020
 MM1      H121   C12       single      1.092    0.020
 MM1      H122   C12       single      1.092    0.020
 MM1      C13    N14       single      1.472    0.020
 MM1      H131   C13       single      1.092    0.020
 MM1      H132   C13       single      1.092    0.020
 MM1      N14    H14       single      1.033    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 MM1      H14    N14    CU1     109.500    3.000
 MM1      H14    N14    C1      109.500    3.000
 MM1      H14    N14    C13     109.500    3.000
 MM1      CU1    N14    C1      109.500    3.000
 MM1      CU1    N14    C13     109.500    3.000
 MM1      C1     N14    C13     109.500    3.000
 MM1      N14    CU1    N4       90.000    3.000
 MM1      N14    CU1    N7       90.000    3.000
 MM1      N14    CU1    N11      90.000    3.000
 MM1      N4     CU1    N7       90.000    3.000
 MM1      N4     CU1    N11      90.000    3.000
 MM1      N7     CU1    N11      90.000    3.000
 MM1      N14    C1     H12     109.500    3.000
 MM1      N14    C1     H11A    109.500    3.000
 MM1      N14    C1     C2      109.500    3.000
 MM1      H12    C1     H11A    107.900    3.000
 MM1      H12    C1     C2      109.470    3.000
 MM1      H11A   C1     C2      109.470    3.000
 MM1      N14    C13    H131    109.500    3.000
 MM1      N14    C13    H132    109.500    3.000
 MM1      N14    C13    C12     109.500    3.000
 MM1      H131   C13    H132    107.900    3.000
 MM1      H131   C13    C12     109.470    3.000
 MM1      H132   C13    C12     109.470    3.000
 MM1      C13    C12    H121    109.470    3.000
 MM1      C13    C12    H122    109.470    3.000
 MM1      C13    C12    N11     109.500    3.000
 MM1      H121   C12    H122    107.900    3.000
 MM1      H121   C12    N11     109.500    3.000
 MM1      H122   C12    N11     109.500    3.000
 MM1      C12    N11    H11     109.500    3.000
 MM1      C12    N11    C10     109.500    3.000
 MM1      C12    N11    CU1     109.500    3.000
 MM1      H11    N11    C10     109.500    3.000
 MM1      H11    N11    CU1     109.500    3.000
 MM1      C10    N11    CU1     109.500    3.000
 MM1      N11    C10    H101    109.500    3.000
 MM1      N11    C10    H102    109.500    3.000
 MM1      N11    C10    C9      109.500    3.000
 MM1      H101   C10    H102    107.900    3.000
 MM1      H101   C10    C9      109.470    3.000
 MM1      H102   C10    C9      109.470    3.000
 MM1      C10    C9     H91     109.470    3.000
 MM1      C10    C9     H92     109.470    3.000
 MM1      C10    C9     C8      111.000    3.000
 MM1      H91    C9     H92     107.900    3.000
 MM1      H91    C9     C8      109.470    3.000
 MM1      H92    C9     C8      109.470    3.000
 MM1      C9     C8     H81     109.470    3.000
 MM1      C9     C8     H82     109.470    3.000
 MM1      C9     C8     N7      109.500    3.000
 MM1      H81    C8     H82     107.900    3.000
 MM1      H81    C8     N7      109.500    3.000
 MM1      H82    C8     N7      109.500    3.000
 MM1      C8     N7     HN7     109.500    3.000
 MM1      C8     N7     C6      109.500    3.000
 MM1      C8     N7     CU1     109.500    3.000
 MM1      HN7    N7     C6      109.500    3.000
 MM1      HN7    N7     CU1     109.500    3.000
 MM1      C6     N7     CU1     109.500    3.000
 MM1      N7     C6     H61     109.500    3.000
 MM1      N7     C6     H62     109.500    3.000
 MM1      N7     C6     C5      109.500    3.000
 MM1      H61    C6     H62     107.900    3.000
 MM1      H61    C6     C5      109.470    3.000
 MM1      H62    C6     C5      109.470    3.000
 MM1      C6     C5     H51     109.470    3.000
 MM1      C6     C5     H52     109.470    3.000
 MM1      C6     C5     N4      109.500    3.000
 MM1      H51    C5     H52     107.900    3.000
 MM1      H51    C5     N4      109.500    3.000
 MM1      H52    C5     N4      109.500    3.000
 MM1      C5     N4     HN4     109.500    3.000
 MM1      C5     N4     C3      109.500    3.000
 MM1      C5     N4     CU1     109.500    3.000
 MM1      HN4    N4     C3      109.500    3.000
 MM1      HN4    N4     CU1     109.500    3.000
 MM1      C3     N4     CU1     109.500    3.000
 MM1      N4     C3     H31     109.500    3.000
 MM1      N4     C3     H32     109.500    3.000
 MM1      N4     C3     C2      109.500    3.000
 MM1      H31    C3     H32     107.900    3.000
 MM1      H31    C3     C2      109.470    3.000
 MM1      H32    C3     C2      109.470    3.000
 MM1      C3     C2     H22     109.470    3.000
 MM1      C3     C2     H21     109.470    3.000
 MM1      C3     C2     C1      111.000    3.000
 MM1      H22    C2     H21     107.900    3.000
 MM1      H22    C2     C1      109.470    3.000
 MM1      H21    C2     C1      109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 MM1      var_1    H14    N14    CU1    N4         0.000   20.000   1
 MM1      var_2    N14    CU1    N4     C5         0.000   20.000   1
 MM1      var_3    N14    CU1    N7     C8         0.000   20.000   1
 MM1      var_4    N14    CU1    N11    C12        0.000   20.000   1
 MM1      var_5    H14    N14    C1     C2         0.000   20.000   1
 MM1      var_6    N14    C1     C2     C3         0.000   20.000   3
 MM1      var_7    H14    N14    C13    C12        0.000   20.000   1
 MM1      var_8    N14    C13    C12    N11        0.000   20.000   3
 MM1      var_9    C13    C12    N11    C10        0.000   20.000   1
 MM1      var_10   C12    N11    C10    C9         0.000   20.000   1
 MM1      var_11   N11    C10    C9     C8         0.000   20.000   3
 MM1      var_12   C10    C9     C8     N7         0.000   20.000   3
 MM1      var_13   C9     C8     N7     C6         0.000   20.000   1
 MM1      var_14   C8     N7     C6     C5         0.000   20.000   1
 MM1      var_15   N7     C6     C5     N4         0.000   20.000   3
 MM1      var_16   C6     C5     N4     C3         0.000   20.000   1
 MM1      var_17   C5     N4     C3     C2         0.000   20.000   1
 MM1      var_18   N4     C3     C2     C1         0.000   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 MM1      chir_01  N4     CU1    C3     C5        positiv
 MM1      chir_02  N7     CU1    C6     C8        positiv
 MM1      chir_03  N11    CU1    C10    C12       positiv
 MM1      chir_04  N14    CU1    C1     C13       positiv
# ------------------------------------------------------