File: MPX.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (326 lines) | stat: -rw-r--r-- 14,474 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
MPX      MPX '4-({[(4-METHYLPIPERAZIN-1-YL)AMINO]C' non-polymer        40  21 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_MPX
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 MPX           O13    O    OS        0.000      0.000    0.000    0.000
 MPX           S7     S    ST        0.000     -1.045    0.455    0.847
 MPX           O14    O    OS        0.000     -1.121    0.237    2.249
 MPX           N15    N    NH2       0.000     -1.107    2.097    0.643
 MPX           H152   H    H         0.000     -0.344    2.692    0.960
 MPX           H151   H    H         0.000     -1.911    2.537    0.198
 MPX           C1     C    CR6       0.000     -2.531   -0.216    0.178
 MPX           C6     C    CR16      0.000     -2.581   -0.591   -1.151
 MPX           H6     H    H         0.000     -1.707   -0.472   -1.780
 MPX           C5     C    CR16      0.000     -3.743   -1.117   -1.679
 MPX           H5     H    H         0.000     -3.781   -1.411   -2.721
 MPX           C4     C    CR6       0.000     -4.864   -1.269   -0.872
 MPX           C3     C    CR16      0.000     -4.812   -0.886    0.462
 MPX           H3     H    H         0.000     -5.687   -0.995    1.092
 MPX           C2     C    CR16      0.000     -3.644   -0.366    0.984
 MPX           H2     H    H         0.000     -3.600   -0.076    2.027
 MPX           N10    N    NH1       0.000     -6.043   -1.802   -1.403
 MPX           H10    H    H         0.000     -6.101   -2.019   -2.388
 MPX           C16    C    C         0.000     -7.103   -2.027   -0.601
 MPX           S25    S    S1        0.000     -7.459   -3.619   -0.080
 MPX           N17    N    NH1       0.000     -7.881   -1.000   -0.208
 MPX           H17    H    H         0.000     -8.624   -1.155    0.458
 MPX           N18    N    NT        0.000     -7.664    0.252   -0.710
 MPX           C19    C    CH2       0.000     -8.902    0.654   -1.388
 MPX           H191   H    H         0.000     -9.739    0.573   -0.691
 MPX           H192   H    H         0.000     -9.077   -0.004   -2.242
 MPX           C20    C    CH2       0.000     -8.777    2.099   -1.873
 MPX           H201   H    H         0.000     -9.679    2.375   -2.424
 MPX           H202   H    H         0.000     -7.909    2.187   -2.530
 MPX           N21    N    NT        0.000     -8.613    2.994   -0.720
 MPX           C24    C    CH3       0.000     -8.380    4.340   -1.261
 MPX           H243   H    H         0.000     -9.250    4.675   -1.763
 MPX           H242   H    H         0.000     -8.152    5.004   -0.469
 MPX           H241   H    H         0.000     -7.569    4.311   -1.942
 MPX           C22    C    CH2       0.000     -7.375    2.592   -0.042
 MPX           H221   H    H         0.000     -7.200    3.250    0.812
 MPX           H222   H    H         0.000     -6.538    2.672   -0.739
 MPX           C23    C    CH2       0.000     -7.501    1.147    0.442
 MPX           H232   H    H         0.000     -8.369    1.059    1.099
 MPX           H231   H    H         0.000     -6.600    0.870    0.994
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 MPX      O13    n/a    S7     START
 MPX      S7     O13    C1     .
 MPX      O14    S7     .      .
 MPX      N15    S7     H151   .
 MPX      H152   N15    .      .
 MPX      H151   N15    .      .
 MPX      C1     S7     C6     .
 MPX      C6     C1     C5     .
 MPX      H6     C6     .      .
 MPX      C5     C6     C4     .
 MPX      H5     C5     .      .
 MPX      C4     C5     N10    .
 MPX      C3     C4     C2     .
 MPX      H3     C3     .      .
 MPX      C2     C3     H2     .
 MPX      H2     C2     .      .
 MPX      N10    C4     C16    .
 MPX      H10    N10    .      .
 MPX      C16    N10    N17    .
 MPX      S25    C16    .      .
 MPX      N17    C16    N18    .
 MPX      H17    N17    .      .
 MPX      N18    N17    C19    .
 MPX      C19    N18    C20    .
 MPX      H191   C19    .      .
 MPX      H192   C19    .      .
 MPX      C20    C19    N21    .
 MPX      H201   C20    .      .
 MPX      H202   C20    .      .
 MPX      N21    C20    C22    .
 MPX      C24    N21    H241   .
 MPX      H243   C24    .      .
 MPX      H242   C24    .      .
 MPX      H241   C24    .      .
 MPX      C22    N21    C23    .
 MPX      H221   C22    .      .
 MPX      H222   C22    .      .
 MPX      C23    C22    H231   .
 MPX      H232   C23    .      .
 MPX      H231   C23    .      END
 MPX      C1     C2     .    ADD
 MPX      N18    C23    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 MPX      C1     C2        single      1.390    0.020
 MPX      C6     C1        double      1.390    0.020
 MPX      C1     S7        single      1.595    0.020
 MPX      C2     C3        double      1.390    0.020
 MPX      H2     C2        single      1.083    0.020
 MPX      C3     C4        single      1.390    0.020
 MPX      H3     C3        single      1.083    0.020
 MPX      C4     C5        double      1.390    0.020
 MPX      N10    C4        single      1.350    0.020
 MPX      C5     C6        single      1.390    0.020
 MPX      H5     C5        single      1.083    0.020
 MPX      H6     C6        single      1.083    0.020
 MPX      C16    N10       single      1.330    0.020
 MPX      H10    N10       single      1.010    0.020
 MPX      S25    C16       double      1.565    0.020
 MPX      N17    C16       single      1.330    0.020
 MPX      N18    N17       single      1.410    0.020
 MPX      H17    N17       single      1.010    0.020
 MPX      N18    C23       single      1.469    0.020
 MPX      C19    N18       single      1.469    0.020
 MPX      C23    C22       single      1.524    0.020
 MPX      H231   C23       single      1.092    0.020
 MPX      H232   C23       single      1.092    0.020
 MPX      C22    N21       single      1.469    0.020
 MPX      H221   C22       single      1.092    0.020
 MPX      H222   C22       single      1.092    0.020
 MPX      C24    N21       single      1.469    0.020
 MPX      N21    C20       single      1.469    0.020
 MPX      H241   C24       single      1.059    0.020
 MPX      H242   C24       single      1.059    0.020
 MPX      H243   C24       single      1.059    0.020
 MPX      C20    C19       single      1.524    0.020
 MPX      H201   C20       single      1.092    0.020
 MPX      H202   C20       single      1.092    0.020
 MPX      H191   C19       single      1.092    0.020
 MPX      H192   C19       single      1.092    0.020
 MPX      N15    S7        single      1.600    0.020
 MPX      O14    S7        double      1.436    0.020
 MPX      S7     O13       double      1.436    0.020
 MPX      H151   N15       single      1.010    0.020
 MPX      H152   N15       single      1.010    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 MPX      O13    S7     O14     109.500    3.000
 MPX      O13    S7     N15     109.500    3.000
 MPX      O13    S7     C1      109.500    3.000
 MPX      O14    S7     N15     109.500    3.000
 MPX      O14    S7     C1      109.500    3.000
 MPX      N15    S7     C1      109.500    3.000
 MPX      S7     N15    H152    120.000    3.000
 MPX      S7     N15    H151    120.000    3.000
 MPX      H152   N15    H151    120.000    3.000
 MPX      S7     C1     C6      120.000    3.000
 MPX      S7     C1     C2      120.000    3.000
 MPX      C6     C1     C2      120.000    3.000
 MPX      C1     C6     H6      120.000    3.000
 MPX      C1     C6     C5      120.000    3.000
 MPX      H6     C6     C5      120.000    3.000
 MPX      C6     C5     H5      120.000    3.000
 MPX      C6     C5     C4      120.000    3.000
 MPX      H5     C5     C4      120.000    3.000
 MPX      C5     C4     C3      120.000    3.000
 MPX      C5     C4     N10     120.000    3.000
 MPX      C3     C4     N10     120.000    3.000
 MPX      C4     C3     H3      120.000    3.000
 MPX      C4     C3     C2      120.000    3.000
 MPX      H3     C3     C2      120.000    3.000
 MPX      C3     C2     H2      120.000    3.000
 MPX      C3     C2     C1      120.000    3.000
 MPX      H2     C2     C1      120.000    3.000
 MPX      C4     N10    H10     120.000    3.000
 MPX      C4     N10    C16     120.000    3.000
 MPX      H10    N10    C16     120.000    3.000
 MPX      N10    C16    S25     120.000    3.000
 MPX      N10    C16    N17     120.000    3.000
 MPX      S25    C16    N17     120.000    3.000
 MPX      C16    N17    H17     120.000    3.000
 MPX      C16    N17    N18     120.000    3.000
 MPX      H17    N17    N18     120.000    3.000
 MPX      N17    N18    C19     109.500    3.000
 MPX      N17    N18    C23     109.500    3.000
 MPX      C19    N18    C23     109.470    3.000
 MPX      N18    C19    H191    109.470    3.000
 MPX      N18    C19    H192    109.470    3.000
 MPX      N18    C19    C20     109.470    3.000
 MPX      H191   C19    H192    107.900    3.000
 MPX      H191   C19    C20     109.470    3.000
 MPX      H192   C19    C20     109.470    3.000
 MPX      C19    C20    H201    109.470    3.000
 MPX      C19    C20    H202    109.470    3.000
 MPX      C19    C20    N21     109.470    3.000
 MPX      H201   C20    H202    107.900    3.000
 MPX      H201   C20    N21     109.470    3.000
 MPX      H202   C20    N21     109.470    3.000
 MPX      C20    N21    C24     109.470    3.000
 MPX      C20    N21    C22     109.470    3.000
 MPX      C24    N21    C22     109.470    3.000
 MPX      N21    C24    H243    109.470    3.000
 MPX      N21    C24    H242    109.470    3.000
 MPX      N21    C24    H241    109.470    3.000
 MPX      H243   C24    H242    109.470    3.000
 MPX      H243   C24    H241    109.470    3.000
 MPX      H242   C24    H241    109.470    3.000
 MPX      N21    C22    H221    109.470    3.000
 MPX      N21    C22    H222    109.470    3.000
 MPX      N21    C22    C23     109.470    3.000
 MPX      H221   C22    H222    107.900    3.000
 MPX      H221   C22    C23     109.470    3.000
 MPX      H222   C22    C23     109.470    3.000
 MPX      C22    C23    H232    109.470    3.000
 MPX      C22    C23    H231    109.470    3.000
 MPX      C22    C23    N18     109.470    3.000
 MPX      H232   C23    H231    107.900    3.000
 MPX      H232   C23    N18     109.470    3.000
 MPX      H231   C23    N18     109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 MPX      var_1    O13    S7     N15    H151     112.653   20.000   1
 MPX      var_2    O13    S7     C1     C6       -22.665   20.000   1
 MPX      CONST_1  S7     C1     C2     C3       180.000    0.000   0
 MPX      CONST_2  S7     C1     C6     C5       180.000    0.000   0
 MPX      CONST_3  C1     C6     C5     C4         0.000    0.000   0
 MPX      CONST_4  C6     C5     C4     N10      180.000    0.000   0
 MPX      CONST_5  C5     C4     C3     C2         0.000    0.000   0
 MPX      CONST_6  C4     C3     C2     C1         0.000    0.000   0
 MPX      var_3    C5     C4     N10    C16      175.830   20.000   1
 MPX      CONST_7  C4     N10    C16    N17        0.000    0.000   0
 MPX      CONST_8  N10    C16    N17    N18        0.000    0.000   0
 MPX      var_4    C16    N17    N18    C19      120.239   20.000   1
 MPX      var_5    N17    N18    C23    C22      180.000   20.000   1
 MPX      var_6    N17    N18    C19    C20      180.000   20.000   1
 MPX      var_7    N18    C19    C20    N21      -60.000   20.000   3
 MPX      var_8    C19    C20    N21    C22       60.000   20.000   1
 MPX      var_9    C20    N21    C24    H241     -53.959   20.000   1
 MPX      var_10   C20    N21    C22    C23      -60.000   20.000   1
 MPX      var_11   N21    C22    C23    N18       60.000   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 MPX      chir_01  N18    N17    C23    C19       positiv
 MPX      chir_02  N21    C22    C24    C20       negativ
 MPX      chir_03  S7     C1     N15    O14       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 MPX      plan-1    C1        0.020
 MPX      plan-1    C2        0.020
 MPX      plan-1    C6        0.020
 MPX      plan-1    S7        0.020
 MPX      plan-1    C3        0.020
 MPX      plan-1    C4        0.020
 MPX      plan-1    C5        0.020
 MPX      plan-1    H2        0.020
 MPX      plan-1    H3        0.020
 MPX      plan-1    N10       0.020
 MPX      plan-1    H5        0.020
 MPX      plan-1    H6        0.020
 MPX      plan-1    H10       0.020
 MPX      plan-2    N10       0.020
 MPX      plan-2    C4        0.020
 MPX      plan-2    C16       0.020
 MPX      plan-2    H10       0.020
 MPX      plan-3    C16       0.020
 MPX      plan-3    N10       0.020
 MPX      plan-3    S25       0.020
 MPX      plan-3    N17       0.020
 MPX      plan-3    H10       0.020
 MPX      plan-3    H17       0.020
 MPX      plan-4    N17       0.020
 MPX      plan-4    C16       0.020
 MPX      plan-4    N18       0.020
 MPX      plan-4    H17       0.020
 MPX      plan-5    N15       0.020
 MPX      plan-5    S7        0.020
 MPX      plan-5    H151      0.020
 MPX      plan-5    H152      0.020
# ------------------------------------------------------