File: N7P.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (202 lines) | stat: -rw-r--r-- 8,179 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
N7P      N7P '1-ACETYL-D-PROLINE                  ' non-polymer        21  11 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_N7P
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 N7P           O9     O    O         0.000      0.000    0.000    0.000
 N7P           C7     C    C         0.000     -0.883    0.310    0.773
 N7P           C8     C    CH3       0.000     -0.536    0.911    2.110
 N7P           H83    H    H         0.000     -0.967    1.875    2.189
 N7P           H82    H    H         0.000     -0.912    0.293    2.885
 N7P           H81    H    H         0.000      0.517    0.988    2.202
 N7P           N6     N    N         0.000     -2.172    0.117    0.434
 N7P           C5     C    CH2       0.000     -3.339    0.446    1.272
 N7P           H51    H    H         0.000     -3.641    1.488    1.151
 N7P           H52    H    H         0.000     -3.146    0.245    2.328
 N7P           C4     C    CH2       0.000     -4.468   -0.484    0.765
 N7P           H41    H    H         0.000     -5.469   -0.085    0.947
 N7P           H42    H    H         0.000     -4.403   -1.498    1.164
 N7P           C3     C    CH2       0.000     -4.189   -0.508   -0.761
 N7P           H31    H    H         0.000     -4.611    0.357   -1.277
 N7P           H32    H    H         0.000     -4.545   -1.424   -1.237
 N7P           C2     C    CH1       0.000     -2.649   -0.453   -0.834
 N7P           H2     H    H         0.000     -2.245   -1.466   -0.963
 N7P           C1     C    C         0.000     -2.222    0.418   -1.987
 N7P           O10    O    OC       -0.500     -2.045   -0.085   -3.118
 N7P           O11    O    OC       -0.500     -2.045    1.644   -1.814
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 N7P      O9     n/a    C7     START
 N7P      C7     O9     N6     .
 N7P      C8     C7     H81    .
 N7P      H83    C8     .      .
 N7P      H82    C8     .      .
 N7P      H81    C8     .      .
 N7P      N6     C7     C5     .
 N7P      C5     N6     C4     .
 N7P      H51    C5     .      .
 N7P      H52    C5     .      .
 N7P      C4     C5     C3     .
 N7P      H41    C4     .      .
 N7P      H42    C4     .      .
 N7P      C3     C4     C2     .
 N7P      H31    C3     .      .
 N7P      H32    C3     .      .
 N7P      C2     C3     C1     .
 N7P      H2     C2     .      .
 N7P      C1     C2     O11    .
 N7P      O10    C1     .      .
 N7P      O11    C1     .      END
 N7P      C2     N6     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 N7P      O10    C1        deloc       1.250    0.020
 N7P      O11    C1        deloc       1.250    0.020
 N7P      C1     C2        single      1.500    0.020
 N7P      C2     N6        single      1.455    0.020
 N7P      C2     C3        single      1.524    0.020
 N7P      H2     C2        single      1.099    0.020
 N7P      N6     C7        single      1.330    0.020
 N7P      C5     N6        single      1.455    0.020
 N7P      C7     O9        double      1.220    0.020
 N7P      C8     C7        single      1.500    0.020
 N7P      H81    C8        single      1.059    0.020
 N7P      H82    C8        single      1.059    0.020
 N7P      H83    C8        single      1.059    0.020
 N7P      C4     C5        single      1.524    0.020
 N7P      H51    C5        single      1.092    0.020
 N7P      H52    C5        single      1.092    0.020
 N7P      C3     C4        single      1.524    0.020
 N7P      H41    C4        single      1.092    0.020
 N7P      H42    C4        single      1.092    0.020
 N7P      H31    C3        single      1.092    0.020
 N7P      H32    C3        single      1.092    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 N7P      O9     C7     C8      123.000    3.000
 N7P      O9     C7     N6      123.000    3.000
 N7P      C8     C7     N6      116.500    3.000
 N7P      C7     C8     H83     109.470    3.000
 N7P      C7     C8     H82     109.470    3.000
 N7P      C7     C8     H81     109.470    3.000
 N7P      H83    C8     H82     109.470    3.000
 N7P      H83    C8     H81     109.470    3.000
 N7P      H82    C8     H81     109.470    3.000
 N7P      C7     N6     C5      127.000    3.000
 N7P      C7     N6     C2      121.000    3.000
 N7P      C5     N6     C2      112.000    3.000
 N7P      N6     C5     H51     109.470    3.000
 N7P      N6     C5     H52     109.470    3.000
 N7P      N6     C5     C4      105.000    3.000
 N7P      H51    C5     H52     107.900    3.000
 N7P      H51    C5     C4      109.470    3.000
 N7P      H52    C5     C4      109.470    3.000
 N7P      C5     C4     H41     109.470    3.000
 N7P      C5     C4     H42     109.470    3.000
 N7P      C5     C4     C3      111.000    3.000
 N7P      H41    C4     H42     107.900    3.000
 N7P      H41    C4     C3      109.470    3.000
 N7P      H42    C4     C3      109.470    3.000
 N7P      C4     C3     H31     109.470    3.000
 N7P      C4     C3     H32     109.470    3.000
 N7P      C4     C3     C2      111.000    3.000
 N7P      H31    C3     H32     107.900    3.000
 N7P      H31    C3     C2      109.470    3.000
 N7P      H32    C3     C2      109.470    3.000
 N7P      C3     C2     H2      108.340    3.000
 N7P      C3     C2     C1      109.470    3.000
 N7P      C3     C2     N6      105.000    3.000
 N7P      H2     C2     C1      108.810    3.000
 N7P      H2     C2     N6      109.470    3.000
 N7P      C1     C2     N6      111.600    3.000
 N7P      C2     C1     O10     118.500    3.000
 N7P      C2     C1     O11     118.500    3.000
 N7P      O10    C1     O11     123.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 N7P      var_1    O9     C7     C8     H81        0.053   20.000   1
 N7P      CONST_1  O9     C7     N6     C5       180.000    0.000   0
 N7P      var_2    C7     N6     C5     C4      -150.000   20.000   1
 N7P      var_3    N6     C5     C4     C3       -30.000   20.000   3
 N7P      var_4    C5     C4     C3     C2        30.000   20.000   3
 N7P      var_5    C4     C3     C2     C1      -150.000   20.000   3
 N7P      var_6    C3     C2     N6     C7       180.000   20.000   3
 N7P      var_7    C3     C2     C1     O11       90.016   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 N7P      chir_01  C2     C1     N6     C3        negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 N7P      plan-1    C1        0.020
 N7P      plan-1    O10       0.020
 N7P      plan-1    O11       0.020
 N7P      plan-1    C2        0.020
 N7P      plan-2    N6        0.020
 N7P      plan-2    C2        0.020
 N7P      plan-2    C7        0.020
 N7P      plan-2    C5        0.020
 N7P      plan-3    C7        0.020
 N7P      plan-3    N6        0.020
 N7P      plan-3    O9        0.020
 N7P      plan-3    C8        0.020
# ------------------------------------------------------