File: OA1.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (218 lines) | stat: -rw-r--r-- 9,053 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
OA1      OA1 '(2-AMINO-1,3-OXAZOL-5-YL)-(3-BROMOPH' non-polymer        22  15 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_OA1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 OA1           O6     O    O         0.000      0.000    0.000    0.000
 OA1           C2     C    C         0.000     -0.717   -0.980    0.096
 OA1           C5     C    CR5       0.000     -0.144   -2.262    0.280
 OA1           C9     C    CR15      0.000      1.193   -2.548    0.463
 OA1           H9     H    H         0.000      2.004   -1.831    0.492
 OA1           N13    N    NRD5      0.000      1.303   -3.869    0.599
 OA1           C14    C    CR5       0.000      0.108   -4.413    0.500
 OA1           N15    N    NH2       0.000     -0.163   -5.756    0.586
 OA1           H152   H    H         0.000      0.586   -6.420    0.738
 OA1           H151   H    H         0.000     -1.115   -6.091    0.497
 OA1           O10    O    O2        0.000     -0.802   -3.449    0.304
 OA1           C1     C    CR6       0.000     -2.187   -0.832    0.021
 OA1           C3     C    CR16      0.000     -2.761    0.439   -0.033
 OA1           H3     H    H         0.000     -2.131    1.320   -0.021
 OA1           C4     C    CR16      0.000     -3.005   -1.962    0.004
 OA1           H4     H    H         0.000     -2.565   -2.951    0.042
 OA1           C8     C    CR16      0.000     -4.376   -1.817   -0.061
 OA1           H8     H    H         0.000     -5.012   -2.693   -0.071
 OA1           C11    C    CR16      0.000     -4.940   -0.555   -0.115
 OA1           H11    H    H         0.000     -6.016   -0.447   -0.166
 OA1           C7     C    CR6       0.000     -4.133    0.570   -0.103
 OA1           BR1    BR   BR        0.000     -4.914    2.291   -0.176
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 OA1      O6     n/a    C2     START
 OA1      C2     O6     C1     .
 OA1      C5     C2     C9     .
 OA1      C9     C5     N13    .
 OA1      H9     C9     .      .
 OA1      N13    C9     C14    .
 OA1      C14    N13    O10    .
 OA1      N15    C14    H151   .
 OA1      H152   N15    .      .
 OA1      H151   N15    .      .
 OA1      O10    C14    .      .
 OA1      C1     C2     C4     .
 OA1      C3     C1     H3     .
 OA1      H3     C3     .      .
 OA1      C4     C1     C8     .
 OA1      H4     C4     .      .
 OA1      C8     C4     C11    .
 OA1      H8     C8     .      .
 OA1      C11    C8     C7     .
 OA1      H11    C11    .      .
 OA1      C7     C11    BR1    .
 OA1      BR1    C7     .      END
 OA1      C7     C3     .    ADD
 OA1      C5     O10    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 OA1      BR1    C7        single      1.890    0.020
 OA1      C7     C3        single      1.390    0.020
 OA1      C7     C11       double      1.390    0.020
 OA1      C3     C1        double      1.390    0.020
 OA1      C11    C8        single      1.390    0.020
 OA1      C8     C4        double      1.390    0.020
 OA1      C4     C1        single      1.390    0.020
 OA1      C1     C2        single      1.500    0.020
 OA1      C2     O6        double      1.220    0.020
 OA1      C5     C2        single      1.490    0.020
 OA1      C5     O10       single      1.370    0.020
 OA1      C9     C5        double      1.387    0.020
 OA1      O10    C14       single      1.370    0.020
 OA1      N15    C14       single      1.355    0.020
 OA1      C14    N13       double      1.350    0.020
 OA1      N13    C9        single      1.350    0.020
 OA1      H3     C3        single      1.083    0.020
 OA1      H11    C11       single      1.083    0.020
 OA1      H8     C8        single      1.083    0.020
 OA1      H4     C4        single      1.083    0.020
 OA1      H9     C9        single      1.083    0.020
 OA1      H151   N15       single      1.010    0.020
 OA1      H152   N15       single      1.010    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 OA1      O6     C2     C5      120.500    3.000
 OA1      O6     C2     C1      120.500    3.000
 OA1      C5     C2     C1      120.000    3.000
 OA1      C2     C5     C9      126.000    3.000
 OA1      C2     C5     O10     108.000    3.000
 OA1      C9     C5     O10     108.000    3.000
 OA1      C5     C9     H9      126.000    3.000
 OA1      C5     C9     N13     108.000    3.000
 OA1      H9     C9     N13     126.000    3.000
 OA1      C9     N13    C14     108.000    3.000
 OA1      N13    C14    N15     108.000    3.000
 OA1      N13    C14    O10     108.000    3.000
 OA1      N15    C14    O10     108.000    3.000
 OA1      C14    N15    H152    120.000    3.000
 OA1      C14    N15    H151    120.000    3.000
 OA1      H152   N15    H151    120.000    3.000
 OA1      C14    O10    C5      108.000    3.000
 OA1      C2     C1     C3      120.000    3.000
 OA1      C2     C1     C4      120.000    3.000
 OA1      C3     C1     C4      120.000    3.000
 OA1      C1     C3     H3      120.000    3.000
 OA1      C1     C3     C7      120.000    3.000
 OA1      H3     C3     C7      120.000    3.000
 OA1      C1     C4     H4      120.000    3.000
 OA1      C1     C4     C8      120.000    3.000
 OA1      H4     C4     C8      120.000    3.000
 OA1      C4     C8     H8      120.000    3.000
 OA1      C4     C8     C11     120.000    3.000
 OA1      H8     C8     C11     120.000    3.000
 OA1      C8     C11    H11     120.000    3.000
 OA1      C8     C11    C7      120.000    3.000
 OA1      H11    C11    C7      120.000    3.000
 OA1      C11    C7     BR1     120.000    3.000
 OA1      C11    C7     C3      120.000    3.000
 OA1      BR1    C7     C3      120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 OA1      var_1    O6     C2     C5     C9         4.886   20.000   1
 OA1      CONST_1  C2     C5     O10    C14      180.000    0.000   0
 OA1      CONST_2  C2     C5     C9     N13      180.000    0.000   0
 OA1      CONST_3  C5     C9     N13    C14        0.000    0.000   0
 OA1      CONST_4  C9     N13    C14    O10        0.000    0.000   0
 OA1      CONST_5  N13    C14    N15    H151    -179.930    0.000   0
 OA1      CONST_6  N13    C14    O10    C5         0.000    0.000   0
 OA1      var_2    O6     C2     C1     C4       173.978   20.000   1
 OA1      CONST_7  C2     C1     C3     C7       180.000    0.000   0
 OA1      CONST_8  C2     C1     C4     C8       180.000    0.000   0
 OA1      CONST_9  C1     C4     C8     C11        0.000    0.000   0
 OA1      CONST_10 C4     C8     C11    C7         0.000    0.000   0
 OA1      CONST_11 C8     C11    C7     BR1      180.000    0.000   0
 OA1      CONST_12 C11    C7     C3     C1         0.000    0.000   0
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 OA1      plan-1    C7        0.020
 OA1      plan-1    BR1       0.020
 OA1      plan-1    C3        0.020
 OA1      plan-1    C11       0.020
 OA1      plan-1    C8        0.020
 OA1      plan-1    C4        0.020
 OA1      plan-1    C1        0.020
 OA1      plan-1    H3        0.020
 OA1      plan-1    H11       0.020
 OA1      plan-1    H8        0.020
 OA1      plan-1    H4        0.020
 OA1      plan-1    C2        0.020
 OA1      plan-2    C2        0.020
 OA1      plan-2    C1        0.020
 OA1      plan-2    O6        0.020
 OA1      plan-2    C5        0.020
 OA1      plan-3    C5        0.020
 OA1      plan-3    C2        0.020
 OA1      plan-3    O10       0.020
 OA1      plan-3    C9        0.020
 OA1      plan-3    C14       0.020
 OA1      plan-3    N13       0.020
 OA1      plan-3    N15       0.020
 OA1      plan-3    H9        0.020
 OA1      plan-3    H152      0.020
 OA1      plan-3    H151      0.020
 OA1      plan-4    N15       0.020
 OA1      plan-4    C14       0.020
 OA1      plan-4    H151      0.020
 OA1      plan-4    H152      0.020
# ------------------------------------------------------