File: OFF.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (402 lines) | stat: -rw-r--r-- 18,185 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
OFF      OFF '2-DEOXY-3,4-BIS-O-[3-(4-HYDROXYPHENY' non-polymer        51  33 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_OFF
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 OFF           O2     O    O        -0.500      0.000    0.000    0.000
 OFF           C9     C    C         0.000      0.644   -0.373    1.005
 OFF           C8     C    C1        0.000      1.359   -1.663    1.137
 OFF           H81    H    H         0.000      1.881   -1.904    2.048
 OFF           C7     C    C1        0.000      1.353   -2.529    0.113
 OFF           H71    H    H         0.000      0.812   -2.250   -0.775
 OFF           C4     C    CR6       0.000      2.034   -3.836    0.119
 OFF           C3     C    CR16      0.000      2.320   -4.457   -1.086
 OFF           H3     H    H         0.000      2.046   -3.987   -2.022
 OFF           C2     C    CR16      0.000      2.965   -5.693   -1.081
 OFF           H2     H    H         0.000      3.195   -6.188   -2.017
 OFF           C1     C    CR6       0.000      3.315   -6.293    0.128
 OFF           O1     O    OH1       0.000      3.945   -7.499    0.134
 OFF           HO1    H    H         0.000      3.466   -8.109    0.710
 OFF           C6     C    CR16      0.000      3.020   -5.655    1.333
 OFF           H6     H    H         0.000      3.292   -6.120    2.273
 OFF           C5     C    CR16      0.000      2.375   -4.418    1.329
 OFF           H5     H    H         0.000      2.143   -3.919    2.261
 OFF           O3     O    O2       -0.500      0.801    0.261    2.073
 OFF           C10    C    CH1       0.000      0.187    1.597    2.223
 OFF           H10    H    H         0.000      0.582    2.263    1.444
 OFF           C11    C    C         0.000     -1.291    1.364    1.973
 OFF           O5     O    OC       -0.500     -1.927    0.356    2.354
 OFF           O4     O    OC       -0.500     -1.824    2.306    1.346
 OFF           C12    C    CH1       0.000      0.491    2.200    3.602
 OFF           H12    H    H         0.000      1.584    2.270    3.697
 OFF           C13    C    CH2       0.000     -0.023    1.392    4.794
 OFF           H131   H    H         0.000      0.471    0.418    4.766
 OFF           H132   H    H         0.000     -1.098    1.257    4.658
 OFF           C14    C    C         0.000      0.239    2.054    6.127
 OFF           O7     O    OC       -0.500      1.197    2.818    6.381
 OFF           O6     O    OC       -0.500     -0.647    1.770    6.963
 OFF           O8     O    O2       -0.500     -0.045    3.581    3.615
 OFF           C15    C    C         0.000      0.331    4.392    2.740
 OFF           O9     O    O        -0.500      1.140    4.174    1.811
 OFF           C16    C    C1        0.000     -0.358    5.678    2.996
 OFF           H161   H    H         0.000     -1.034    5.775    3.829
 OFF           C17    C    C1        0.000     -0.134    6.720    2.183
 OFF           H171   H    H         0.000      0.555    6.580    1.368
 OFF           C18    C    CR6       0.000     -0.764    8.044    2.327
 OFF           C19    C    CR16      0.000     -1.309    8.407    3.548
 OFF           H19    H    H         0.000     -1.271    7.724    4.388
 OFF           C23    C    CR16      0.000     -0.800    8.900    1.239
 OFF           H23    H    H         0.000     -0.369    8.600    0.292
 OFF           C22    C    CR16      0.000     -1.398   10.153    1.375
 OFF           H22    H    H         0.000     -1.434   10.831    0.531
 OFF           C21    C    CR6       0.000     -1.951   10.533    2.598
 OFF           O10    O    OH1       0.000     -2.533   11.756    2.730
 OFF           HO10   H    H         0.000     -2.964   11.816    3.594
 OFF           C20    C    CR16      0.000     -1.906    9.660    3.685
 OFF           H20    H    H         0.000     -2.336    9.955    4.635
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 OFF      O2     n/a    C9     START
 OFF      C9     O2     O3     .
 OFF      C8     C9     C7     .
 OFF      H81    C8     .      .
 OFF      C7     C8     C4     .
 OFF      H71    C7     .      .
 OFF      C4     C7     C3     .
 OFF      C3     C4     C2     .
 OFF      H3     C3     .      .
 OFF      C2     C3     C1     .
 OFF      H2     C2     .      .
 OFF      C1     C2     C6     .
 OFF      O1     C1     HO1    .
 OFF      HO1    O1     .      .
 OFF      C6     C1     C5     .
 OFF      H6     C6     .      .
 OFF      C5     C6     H5     .
 OFF      H5     C5     .      .
 OFF      O3     C9     C10    .
 OFF      C10    O3     C12    .
 OFF      H10    C10    .      .
 OFF      C11    C10    O4     .
 OFF      O5     C11    .      .
 OFF      O4     C11    .      .
 OFF      C12    C10    O8     .
 OFF      H12    C12    .      .
 OFF      C13    C12    C14    .
 OFF      H131   C13    .      .
 OFF      H132   C13    .      .
 OFF      C14    C13    O6     .
 OFF      O7     C14    .      .
 OFF      O6     C14    .      .
 OFF      O8     C12    C15    .
 OFF      C15    O8     C16    .
 OFF      O9     C15    .      .
 OFF      C16    C15    C17    .
 OFF      H161   C16    .      .
 OFF      C17    C16    C18    .
 OFF      H171   C17    .      .
 OFF      C18    C17    C23    .
 OFF      C19    C18    H19    .
 OFF      H19    C19    .      .
 OFF      C23    C18    C22    .
 OFF      H23    C23    .      .
 OFF      C22    C23    C21    .
 OFF      H22    C22    .      .
 OFF      C21    C22    C20    .
 OFF      O10    C21    HO10   .
 OFF      HO10   O10    .      .
 OFF      C20    C21    H20    .
 OFF      H20    C20    .      END
 OFF      C19    C20    .    ADD
 OFF      C4     C5     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 OFF      C19    C18       double      1.390    0.020
 OFF      C19    C20       single      1.390    0.020
 OFF      H19    C19       single      1.083    0.020
 OFF      C20    C21       double      1.390    0.020
 OFF      H20    C20       single      1.083    0.020
 OFF      C21    C22       single      1.390    0.020
 OFF      O10    C21       single      1.362    0.020
 OFF      HO10   O10       single      0.967    0.020
 OFF      C22    C23       double      1.390    0.020
 OFF      H22    C22       single      1.083    0.020
 OFF      C23    C18       single      1.390    0.020
 OFF      H23    C23       single      1.083    0.020
 OFF      C18    C17       single      1.480    0.020
 OFF      C17    C16       double      1.330    0.020
 OFF      H171   C17       single      1.077    0.020
 OFF      C16    C15       single      1.475    0.020
 OFF      H161   C16       single      1.077    0.020
 OFF      O9     C15       deloc       1.220    0.020
 OFF      C15    O8        deloc       1.454    0.020
 OFF      O8     C12       single      1.426    0.020
 OFF      C13    C12       single      1.524    0.020
 OFF      C12    C10       single      1.524    0.020
 OFF      H12    C12       single      1.099    0.020
 OFF      C14    C13       single      1.510    0.020
 OFF      H131   C13       single      1.092    0.020
 OFF      H132   C13       single      1.092    0.020
 OFF      O7     C14       deloc       1.250    0.020
 OFF      O6     C14       deloc       1.250    0.020
 OFF      C11    C10       single      1.500    0.020
 OFF      C10    O3        single      1.426    0.020
 OFF      H10    C10       single      1.099    0.020
 OFF      O5     C11       deloc       1.250    0.020
 OFF      O4     C11       deloc       1.250    0.020
 OFF      O3     C9        deloc       1.454    0.020
 OFF      C8     C9        single      1.475    0.020
 OFF      C9     O2        deloc       1.220    0.020
 OFF      C7     C8        double      1.330    0.020
 OFF      H81    C8        single      1.077    0.020
 OFF      C4     C7        single      1.480    0.020
 OFF      H71    C7        single      1.077    0.020
 OFF      C3     C4        single      1.390    0.020
 OFF      C4     C5        double      1.390    0.020
 OFF      C5     C6        single      1.390    0.020
 OFF      H5     C5        single      1.083    0.020
 OFF      C6     C1        double      1.390    0.020
 OFF      H6     C6        single      1.083    0.020
 OFF      C1     C2        single      1.390    0.020
 OFF      O1     C1        single      1.362    0.020
 OFF      HO1    O1        single      0.967    0.020
 OFF      C2     C3        double      1.390    0.020
 OFF      H2     C2        single      1.083    0.020
 OFF      H3     C3        single      1.083    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 OFF      O2     C9     C8      120.500    3.000
 OFF      O2     C9     O3      119.000    3.000
 OFF      C8     C9     O3      120.000    3.000
 OFF      C9     C8     H81     120.000    3.000
 OFF      C9     C8     C7      120.000    3.000
 OFF      H81    C8     C7      120.000    3.000
 OFF      C8     C7     H71     120.000    3.000
 OFF      C8     C7     C4      120.000    3.000
 OFF      H71    C7     C4      120.000    3.000
 OFF      C7     C4     C3      120.000    3.000
 OFF      C7     C4     C5      120.000    3.000
 OFF      C3     C4     C5      120.000    3.000
 OFF      C4     C3     H3      120.000    3.000
 OFF      C4     C3     C2      120.000    3.000
 OFF      H3     C3     C2      120.000    3.000
 OFF      C3     C2     H2      120.000    3.000
 OFF      C3     C2     C1      120.000    3.000
 OFF      H2     C2     C1      120.000    3.000
 OFF      C2     C1     O1      120.000    3.000
 OFF      C2     C1     C6      120.000    3.000
 OFF      O1     C1     C6      120.000    3.000
 OFF      C1     O1     HO1     109.470    3.000
 OFF      C1     C6     H6      120.000    3.000
 OFF      C1     C6     C5      120.000    3.000
 OFF      H6     C6     C5      120.000    3.000
 OFF      C6     C5     H5      120.000    3.000
 OFF      C6     C5     C4      120.000    3.000
 OFF      H5     C5     C4      120.000    3.000
 OFF      C9     O3     C10     111.800    3.000
 OFF      O3     C10    H10     109.470    3.000
 OFF      O3     C10    C11     109.470    3.000
 OFF      O3     C10    C12     109.470    3.000
 OFF      H10    C10    C11     108.810    3.000
 OFF      H10    C10    C12     108.340    3.000
 OFF      C11    C10    C12     109.470    3.000
 OFF      C10    C11    O5      118.500    3.000
 OFF      C10    C11    O4      118.500    3.000
 OFF      O5     C11    O4      123.000    3.000
 OFF      C10    C12    H12     108.340    3.000
 OFF      C10    C12    C13     111.000    3.000
 OFF      C10    C12    O8      109.470    3.000
 OFF      H12    C12    C13     108.340    3.000
 OFF      H12    C12    O8      109.470    3.000
 OFF      C13    C12    O8      109.470    3.000
 OFF      C12    C13    H131    109.470    3.000
 OFF      C12    C13    H132    109.470    3.000
 OFF      C12    C13    C14     109.470    3.000
 OFF      H131   C13    H132    107.900    3.000
 OFF      H131   C13    C14     109.470    3.000
 OFF      H132   C13    C14     109.470    3.000
 OFF      C13    C14    O7      118.500    3.000
 OFF      C13    C14    O6      118.500    3.000
 OFF      O7     C14    O6      123.000    3.000
 OFF      C12    O8     C15     111.800    3.000
 OFF      O8     C15    O9      119.000    3.000
 OFF      O8     C15    C16     120.000    3.000
 OFF      O9     C15    C16     120.500    3.000
 OFF      C15    C16    H161    120.000    3.000
 OFF      C15    C16    C17     120.000    3.000
 OFF      H161   C16    C17     120.000    3.000
 OFF      C16    C17    H171    120.000    3.000
 OFF      C16    C17    C18     120.000    3.000
 OFF      H171   C17    C18     120.000    3.000
 OFF      C17    C18    C19     120.000    3.000
 OFF      C17    C18    C23     120.000    3.000
 OFF      C19    C18    C23     120.000    3.000
 OFF      C18    C19    H19     120.000    3.000
 OFF      C18    C19    C20     120.000    3.000
 OFF      H19    C19    C20     120.000    3.000
 OFF      C18    C23    H23     120.000    3.000
 OFF      C18    C23    C22     120.000    3.000
 OFF      H23    C23    C22     120.000    3.000
 OFF      C23    C22    H22     120.000    3.000
 OFF      C23    C22    C21     120.000    3.000
 OFF      H22    C22    C21     120.000    3.000
 OFF      C22    C21    O10     120.000    3.000
 OFF      C22    C21    C20     120.000    3.000
 OFF      O10    C21    C20     120.000    3.000
 OFF      C21    O10    HO10    109.470    3.000
 OFF      C21    C20    H20     120.000    3.000
 OFF      C21    C20    C19     120.000    3.000
 OFF      H20    C20    C19     120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 OFF      var_1    O2     C9     C8     C7         0.638   20.000   1
 OFF      CONST_1  C9     C8     C7     C4       179.524    0.000   0
 OFF      var_2    C8     C7     C4     C3      -159.997   20.000   1
 OFF      CONST_2  C7     C4     C5     C6       180.000    0.000   0
 OFF      CONST_3  C7     C4     C3     C2       180.000    0.000   0
 OFF      CONST_4  C4     C3     C2     C1         0.000    0.000   0
 OFF      CONST_5  C3     C2     C1     C6         0.000    0.000   0
 OFF      var_3    C2     C1     O1     HO1     -127.594   20.000   1
 OFF      CONST_6  C2     C1     C6     C5         0.000    0.000   0
 OFF      CONST_7  C1     C6     C5     C4         0.000    0.000   0
 OFF      var_4    O2     C9     O3     C10       -0.031   20.000   1
 OFF      var_5    C9     O3     C10    C12      179.716   20.000   1
 OFF      var_6    O3     C10    C11    O4      -142.681   20.000   3
 OFF      var_7    O3     C10    C12    O8       174.588   20.000   3
 OFF      var_8    C10    C12    C13    C14     -177.199   20.000   3
 OFF      var_9    C12    C13    C14    O6       149.195   20.000   3
 OFF      var_10   C10    C12    O8     C15      -56.287   20.000   1
 OFF      var_11   C12    O8     C15    C16     -179.941   20.000   1
 OFF      var_12   O8     C15    C16    C17     -179.410   20.000   1
 OFF      CONST_8  C15    C16    C17    C18      179.533    0.000   0
 OFF      var_13   C16    C17    C18    C23     -160.013   20.000   1
 OFF      CONST_9  C17    C18    C19    C20      180.000    0.000   0
 OFF      CONST_10 C18    C19    C20    C21        0.000    0.000   0
 OFF      CONST_11 C17    C18    C23    C22      180.000    0.000   0
 OFF      CONST_12 C18    C23    C22    C21        0.000    0.000   0
 OFF      CONST_13 C23    C22    C21    C20        0.000    0.000   0
 OFF      var_14   C22    C21    O10    HO10     172.641   20.000   1
 OFF      CONST_14 C22    C21    C20    C19        0.000    0.000   0
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 OFF      chir_01  C12    O8     C13    C10       negativ
 OFF      chir_02  C10    C12    C11    O3        positiv
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 OFF      plan-1    C19       0.020
 OFF      plan-1    C20       0.020
 OFF      plan-1    C18       0.020
 OFF      plan-1    H19       0.020
 OFF      plan-1    C21       0.020
 OFF      plan-1    C22       0.020
 OFF      plan-1    C23       0.020
 OFF      plan-1    H20       0.020
 OFF      plan-1    O10       0.020
 OFF      plan-1    H22       0.020
 OFF      plan-1    H23       0.020
 OFF      plan-1    C17       0.020
 OFF      plan-1    H171      0.020
 OFF      plan-2    C17       0.020
 OFF      plan-2    C18       0.020
 OFF      plan-2    C16       0.020
 OFF      plan-2    H171      0.020
 OFF      plan-2    C15       0.020
 OFF      plan-2    H161      0.020
 OFF      plan-3    C15       0.020
 OFF      plan-3    C16       0.020
 OFF      plan-3    O9        0.020
 OFF      plan-3    O8        0.020
 OFF      plan-3    H161      0.020
 OFF      plan-4    C14       0.020
 OFF      plan-4    C13       0.020
 OFF      plan-4    O6        0.020
 OFF      plan-4    O7        0.020
 OFF      plan-5    C11       0.020
 OFF      plan-5    C10       0.020
 OFF      plan-5    O4        0.020
 OFF      plan-5    O5        0.020
 OFF      plan-6    C9        0.020
 OFF      plan-6    O3        0.020
 OFF      plan-6    O2        0.020
 OFF      plan-6    C8        0.020
 OFF      plan-6    H81       0.020
 OFF      plan-7    C8        0.020
 OFF      plan-7    C9        0.020
 OFF      plan-7    C7        0.020
 OFF      plan-7    H81       0.020
 OFF      plan-7    C4        0.020
 OFF      plan-7    H71       0.020
 OFF      plan-8    C4        0.020
 OFF      plan-8    C7        0.020
 OFF      plan-8    C5        0.020
 OFF      plan-8    C3        0.020
 OFF      plan-8    C6        0.020
 OFF      plan-8    C1        0.020
 OFF      plan-8    C2        0.020
 OFF      plan-8    H5        0.020
 OFF      plan-8    H6        0.020
 OFF      plan-8    O1        0.020
 OFF      plan-8    H2        0.020
 OFF      plan-8    H3        0.020
 OFF      plan-8    H71       0.020
# ------------------------------------------------------