File: OGG.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (208 lines) | stat: -rw-r--r-- 8,634 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
OGG      OGG '2-(2-CARBAMOYLMETHOXY-ETHOXY)-ACETAM' non-polymer        24  12 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_OGG
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 OGG           OM     O    O         0.000      0.000    0.000    0.000
 OGG           CJ     C    C         0.000     -0.264    0.677   -0.972
 OGG           NK     N    NH2       0.000      0.724    1.284   -1.658
 OGG           HNK2   H    H         0.000      0.508    1.850   -2.470
 OGG           HNK1   H    H         0.000      1.688    1.178   -1.367
 OGG           CI     C    CH2       0.000     -1.696    0.835   -1.411
 OGG           HI1    H    H         0.000     -1.807    0.454   -2.428
 OGG           HI2    H    H         0.000     -1.968    1.892   -1.388
 OGG           OH     O    O2        0.000     -2.549    0.102   -0.531
 OGG           CG     C    CH2       0.000     -3.886    0.291   -0.999
 OGG           HG1    H    H         0.000     -3.969   -0.082   -2.022
 OGG           HG2    H    H         0.000     -4.130    1.355   -0.980
 OGG           CF     C    CH2       0.000     -4.855   -0.472   -0.096
 OGG           HF1    H    H         0.000     -4.611   -1.536   -0.118
 OGG           HF2    H    H         0.000     -5.876   -0.327   -0.453
 OGG           OE     O    O2        0.000     -4.744    0.015    1.243
 OGG           CD     C    CH2       0.000     -5.669   -0.732    2.033
 OGG           HD1    H    H         0.000     -5.415   -1.793    1.983
 OGG           HD2    H    H         0.000     -6.680   -0.582    1.647
 OGG           CC     C    C         0.000     -5.602   -0.265    3.463
 OGG           OL     O    O         0.000     -4.838    0.624    3.775
 OGG           NB     N    NH2       0.000     -6.392   -0.831    4.397
 OGG           HNB2   H    H         0.000     -7.033   -1.572    4.142
 OGG           HNB1   H    H         0.000     -6.349   -0.519    5.359
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 OGG      OM     n/a    CJ     START
 OGG      CJ     OM     CI     .
 OGG      NK     CJ     HNK1   .
 OGG      HNK2   NK     .      .
 OGG      HNK1   NK     .      .
 OGG      CI     CJ     OH     .
 OGG      HI1    CI     .      .
 OGG      HI2    CI     .      .
 OGG      OH     CI     CG     .
 OGG      CG     OH     CF     .
 OGG      HG1    CG     .      .
 OGG      HG2    CG     .      .
 OGG      CF     CG     OE     .
 OGG      HF1    CF     .      .
 OGG      HF2    CF     .      .
 OGG      OE     CF     CD     .
 OGG      CD     OE     CC     .
 OGG      HD1    CD     .      .
 OGG      HD2    CD     .      .
 OGG      CC     CD     NB     .
 OGG      OL     CC     .      .
 OGG      NB     CC     HNB1   .
 OGG      HNB2   NB     .      .
 OGG      HNB1   NB     .      END
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 OGG      NB     CC        single      1.332    0.020
 OGG      HNB1   NB        single      1.010    0.020
 OGG      HNB2   NB        single      1.010    0.020
 OGG      OL     CC        double      1.220    0.020
 OGG      CC     CD        single      1.510    0.020
 OGG      CD     OE        single      1.426    0.020
 OGG      HD1    CD        single      1.092    0.020
 OGG      HD2    CD        single      1.092    0.020
 OGG      OE     CF        single      1.426    0.020
 OGG      CF     CG        single      1.524    0.020
 OGG      HF1    CF        single      1.092    0.020
 OGG      HF2    CF        single      1.092    0.020
 OGG      CG     OH        single      1.426    0.020
 OGG      HG1    CG        single      1.092    0.020
 OGG      HG2    CG        single      1.092    0.020
 OGG      OH     CI        single      1.426    0.020
 OGG      CI     CJ        single      1.510    0.020
 OGG      HI1    CI        single      1.092    0.020
 OGG      HI2    CI        single      1.092    0.020
 OGG      CJ     OM        double      1.220    0.020
 OGG      NK     CJ        single      1.332    0.020
 OGG      HNK1   NK        single      1.010    0.020
 OGG      HNK2   NK        single      1.010    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 OGG      OM     CJ     NK      123.000    3.000
 OGG      OM     CJ     CI      120.500    3.000
 OGG      NK     CJ     CI      116.500    3.000
 OGG      CJ     NK     HNK2    120.000    3.000
 OGG      CJ     NK     HNK1    120.000    3.000
 OGG      HNK2   NK     HNK1    120.000    3.000
 OGG      CJ     CI     HI1     109.470    3.000
 OGG      CJ     CI     HI2     109.470    3.000
 OGG      CJ     CI     OH      109.470    3.000
 OGG      HI1    CI     HI2     107.900    3.000
 OGG      HI1    CI     OH      109.470    3.000
 OGG      HI2    CI     OH      109.470    3.000
 OGG      CI     OH     CG      111.800    3.000
 OGG      OH     CG     HG1     109.470    3.000
 OGG      OH     CG     HG2     109.470    3.000
 OGG      OH     CG     CF      109.470    3.000
 OGG      HG1    CG     HG2     107.900    3.000
 OGG      HG1    CG     CF      109.470    3.000
 OGG      HG2    CG     CF      109.470    3.000
 OGG      CG     CF     HF1     109.470    3.000
 OGG      CG     CF     HF2     109.470    3.000
 OGG      CG     CF     OE      109.470    3.000
 OGG      HF1    CF     HF2     107.900    3.000
 OGG      HF1    CF     OE      109.470    3.000
 OGG      HF2    CF     OE      109.470    3.000
 OGG      CF     OE     CD      111.800    3.000
 OGG      OE     CD     HD1     109.470    3.000
 OGG      OE     CD     HD2     109.470    3.000
 OGG      OE     CD     CC      109.470    3.000
 OGG      HD1    CD     HD2     107.900    3.000
 OGG      HD1    CD     CC      109.470    3.000
 OGG      HD2    CD     CC      109.470    3.000
 OGG      CD     CC     OL      120.500    3.000
 OGG      CD     CC     NB      116.500    3.000
 OGG      OL     CC     NB      123.000    3.000
 OGG      CC     NB     HNB2    120.000    3.000
 OGG      CC     NB     HNB1    120.000    3.000
 OGG      HNB2   NB     HNB1    120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 OGG      CONST_1  OM     CJ     NK     HNK1       0.000    0.000   0
 OGG      var_1    OM     CJ     CI     OH         0.132   20.000   3
 OGG      var_2    CJ     CI     OH     CG      -179.988   20.000   1
 OGG      var_3    CI     OH     CG     CF       179.952   20.000   1
 OGG      var_4    OH     CG     CF     OE        59.893   20.000   3
 OGG      var_5    CG     CF     OE     CD       179.952   20.000   1
 OGG      var_6    CF     OE     CD     CC      -179.988   20.000   1
 OGG      var_7    OE     CD     CC     NB      -179.983   20.000   3
 OGG      CONST_2  CD     CC     NB     HNB1     180.000    0.000   0
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 OGG      plan-1    NB        0.020
 OGG      plan-1    CC        0.020
 OGG      plan-1    HNB1      0.020
 OGG      plan-1    HNB2      0.020
 OGG      plan-2    CC        0.020
 OGG      plan-2    NB        0.020
 OGG      plan-2    OL        0.020
 OGG      plan-2    CD        0.020
 OGG      plan-2    HNB2      0.020
 OGG      plan-2    HNB1      0.020
 OGG      plan-3    CJ        0.020
 OGG      plan-3    CI        0.020
 OGG      plan-3    OM        0.020
 OGG      plan-3    NK        0.020
 OGG      plan-3    HNK2      0.020
 OGG      plan-3    HNK1      0.020
 OGG      plan-4    NK        0.020
 OGG      plan-4    CJ        0.020
 OGG      plan-4    HNK1      0.020
 OGG      plan-4    HNK2      0.020
# ------------------------------------------------------