File: OSF.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (227 lines) | stat: -rw-r--r-- 9,817 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
OSF      OSF 'octyl sulfate                       ' non-polymer        30  13 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_OSF
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 OSF           O4     O    OS        0.000      0.000    0.000    0.000
 OSF           S      S    ST        0.000     -1.169    0.812    0.296
 OSF           O2     O    OS        0.000     -1.371    1.859   -0.694
 OSF           O3     O    OS       -1.000     -1.137    1.342    1.651
 OSF           O1     O    O2        0.000     -2.377   -0.109    0.213
 OSF           C1     C    CH2       0.000     -3.628    0.577    0.142
 OSF           H1     H    H         0.000     -3.645    1.212   -0.746
 OSF           H1A    H    H         0.000     -3.754    1.196    1.033
 OSF           C2     C    CH2       0.000     -4.766   -0.443    0.063
 OSF           H2     H    H         0.000     -4.748   -1.078    0.951
 OSF           H2A    H    H         0.000     -4.638   -1.062   -0.828
 OSF           C3     C    CH2       0.000     -6.105    0.292   -0.013
 OSF           H3     H    H         0.000     -6.122    0.927   -0.901
 OSF           H3A    H    H         0.000     -6.231    0.911    0.878
 OSF           C4     C    CH2       0.000     -7.243   -0.728   -0.093
 OSF           H4     H    H         0.000     -7.225   -1.363    0.796
 OSF           H4A    H    H         0.000     -7.114   -1.347   -0.983
 OSF           C5     C    CH2       0.000     -8.583    0.007   -0.170
 OSF           H5     H    H         0.000     -8.599    0.641   -1.058
 OSF           H5A    H    H         0.000     -8.709    0.627    0.721
 OSF           C6     C    CH2       0.000     -9.721   -1.013   -0.248
 OSF           H6     H    H         0.000     -9.703   -1.647    0.641
 OSF           H6A    H    H         0.000     -9.593   -1.633   -1.138
 OSF           C7     C    CH2       0.000    -11.060   -0.278   -0.325
 OSF           H7     H    H         0.000    -11.076    0.357   -1.214
 OSF           H7A    H    H         0.000    -11.186    0.341    0.565
 OSF           C8     C    CH3       0.000    -12.198   -1.298   -0.404
 OSF           H8B    H    H         0.000    -13.128   -0.792   -0.457
 OSF           H8A    H    H         0.000    -12.078   -1.900   -1.269
 OSF           H8     H    H         0.000    -12.184   -1.917    0.457
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 OSF      O4     n/a    S      START
 OSF      S      O4     O1     .
 OSF      O2     S      .      .
 OSF      O3     S      .      .
 OSF      O1     S      C1     .
 OSF      C1     O1     C2     .
 OSF      H1     C1     .      .
 OSF      H1A    C1     .      .
 OSF      C2     C1     C3     .
 OSF      H2     C2     .      .
 OSF      H2A    C2     .      .
 OSF      C3     C2     C4     .
 OSF      H3     C3     .      .
 OSF      H3A    C3     .      .
 OSF      C4     C3     C5     .
 OSF      H4     C4     .      .
 OSF      H4A    C4     .      .
 OSF      C5     C4     C6     .
 OSF      H5     C5     .      .
 OSF      H5A    C5     .      .
 OSF      C6     C5     C7     .
 OSF      H6     C6     .      .
 OSF      H6A    C6     .      .
 OSF      C7     C6     C8     .
 OSF      H7     C7     .      .
 OSF      H7A    C7     .      .
 OSF      C8     C7     H8     .
 OSF      H8B    C8     .      .
 OSF      H8A    C8     .      .
 OSF      H8     C8     .      END
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 OSF      O1     S         single      1.535    0.020
 OSF      O2     S         deloc       1.480    0.020
 OSF      O3     S         deloc       1.480    0.020
 OSF      S      O4        deloc       1.480    0.020
 OSF      C1     O1        single      1.426    0.020
 OSF      C2     C1        single      1.524    0.020
 OSF      C3     C2        single      1.524    0.020
 OSF      C4     C3        single      1.524    0.020
 OSF      C5     C4        single      1.524    0.020
 OSF      C6     C5        single      1.524    0.020
 OSF      C7     C6        single      1.524    0.020
 OSF      C8     C7        single      1.513    0.020
 OSF      H1     C1        single      1.092    0.020
 OSF      H1A    C1        single      1.092    0.020
 OSF      H2     C2        single      1.092    0.020
 OSF      H2A    C2        single      1.092    0.020
 OSF      H3     C3        single      1.092    0.020
 OSF      H3A    C3        single      1.092    0.020
 OSF      H4     C4        single      1.092    0.020
 OSF      H4A    C4        single      1.092    0.020
 OSF      H5     C5        single      1.092    0.020
 OSF      H5A    C5        single      1.092    0.020
 OSF      H6     C6        single      1.092    0.020
 OSF      H6A    C6        single      1.092    0.020
 OSF      H7     C7        single      1.092    0.020
 OSF      H7A    C7        single      1.092    0.020
 OSF      H8     C8        single      1.059    0.020
 OSF      H8A    C8        single      1.059    0.020
 OSF      H8B    C8        single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 OSF      O4     S      O2      109.500    3.000
 OSF      O4     S      O3      109.500    3.000
 OSF      O4     S      O1      109.500    3.000
 OSF      O2     S      O3      109.500    3.000
 OSF      O2     S      O1      109.500    3.000
 OSF      O3     S      O1      109.500    3.000
 OSF      S      O1     C1      120.000    3.000
 OSF      O1     C1     H1      109.470    3.000
 OSF      O1     C1     H1A     109.470    3.000
 OSF      O1     C1     C2      109.470    3.000
 OSF      H1     C1     H1A     107.900    3.000
 OSF      H1     C1     C2      109.470    3.000
 OSF      H1A    C1     C2      109.470    3.000
 OSF      C1     C2     H2      109.470    3.000
 OSF      C1     C2     H2A     109.470    3.000
 OSF      C1     C2     C3      111.000    3.000
 OSF      H2     C2     H2A     107.900    3.000
 OSF      H2     C2     C3      109.470    3.000
 OSF      H2A    C2     C3      109.470    3.000
 OSF      C2     C3     H3      109.470    3.000
 OSF      C2     C3     H3A     109.470    3.000
 OSF      C2     C3     C4      111.000    3.000
 OSF      H3     C3     H3A     107.900    3.000
 OSF      H3     C3     C4      109.470    3.000
 OSF      H3A    C3     C4      109.470    3.000
 OSF      C3     C4     H4      109.470    3.000
 OSF      C3     C4     H4A     109.470    3.000
 OSF      C3     C4     C5      111.000    3.000
 OSF      H4     C4     H4A     107.900    3.000
 OSF      H4     C4     C5      109.470    3.000
 OSF      H4A    C4     C5      109.470    3.000
 OSF      C4     C5     H5      109.470    3.000
 OSF      C4     C5     H5A     109.470    3.000
 OSF      C4     C5     C6      111.000    3.000
 OSF      H5     C5     H5A     107.900    3.000
 OSF      H5     C5     C6      109.470    3.000
 OSF      H5A    C5     C6      109.470    3.000
 OSF      C5     C6     H6      109.470    3.000
 OSF      C5     C6     H6A     109.470    3.000
 OSF      C5     C6     C7      111.000    3.000
 OSF      H6     C6     H6A     107.900    3.000
 OSF      H6     C6     C7      109.470    3.000
 OSF      H6A    C6     C7      109.470    3.000
 OSF      C6     C7     H7      109.470    3.000
 OSF      C6     C7     H7A     109.470    3.000
 OSF      C6     C7     C8      111.000    3.000
 OSF      H7     C7     H7A     107.900    3.000
 OSF      H7     C7     C8      109.470    3.000
 OSF      H7A    C7     C8      109.470    3.000
 OSF      C7     C8     H8B     109.470    3.000
 OSF      C7     C8     H8A     109.470    3.000
 OSF      C7     C8     H8      109.470    3.000
 OSF      H8B    C8     H8A     109.470    3.000
 OSF      H8B    C8     H8      109.470    3.000
 OSF      H8A    C8     H8      109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 OSF      var_1    O4     S      O1     C1      -165.008   20.000   1
 OSF      var_2    S      O1     C1     C2       179.995   20.000   1
 OSF      var_3    O1     C1     C2     C3       179.997   20.000   3
 OSF      var_4    C1     C2     C3     C4       180.000   20.000   3
 OSF      var_5    C2     C3     C4     C5      -179.960   20.000   3
 OSF      var_6    C3     C4     C5     C6      -179.960   20.000   3
 OSF      var_7    C4     C5     C6     C7       180.000   20.000   3
 OSF      var_8    C5     C6     C7     C8       179.960   20.000   3
 OSF      var_9    C6     C7     C8     H8        59.940   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 OSF      chir_01  S      O1     O2     O3        negativ
# ------------------------------------------------------