File: P2C.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (257 lines) | stat: -rw-r--r-- 11,080 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
P2C      P2C '2-[(3,5-DICHLORO-4-TRIOXIDANYLPHENYL' non-polymer        29  21 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_P2C
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 P2C           O20    O    OC       -0.500      0.000    0.000    0.000
 P2C           C19    C    C         0.000     -1.095    0.578    0.178
 P2C           O21    O    OC       -0.500     -1.635    1.200   -0.763
 P2C           C13    C    CR6       0.000     -1.749    0.525    1.498
 P2C           C12    C    CR16      0.000     -1.090   -0.053    2.587
 P2C           H12    H    H         0.000     -0.095   -0.463    2.464
 P2C           C17    C    CR16      0.000     -1.707   -0.099    3.817
 P2C           H17    H    H         0.000     -1.198   -0.551    4.659
 P2C           C16    C    CR16      0.000     -2.977    0.431    3.985
 P2C           H16    H    H         0.000     -3.453    0.390    4.956
 P2C           C15    C    CR16      0.000     -3.640    1.010    2.921
 P2C           H15    H    H         0.000     -4.632    1.420    3.060
 P2C           C14    C    CR6       0.000     -3.033    1.066    1.671
 P2C           N18    N    NH1       0.000     -3.697    1.648    0.599
 P2C           H18    H    H         0.000     -3.742    2.654    0.520
 P2C           C5     C    CR6       0.000     -4.302    0.842   -0.370
 P2C           C6     C    CR16      0.000     -5.038    1.423   -1.395
 P2C           H6     H    H         0.000     -5.142    2.500   -1.445
 P2C           C1     C    CR6       0.000     -5.637    0.626   -2.353
 P2C           CL8    CL   CL        0.000     -6.556    1.351   -3.634
 P2C           C4     C    CR16      0.000     -4.169   -0.538   -0.308
 P2C           H4     H    H         0.000     -3.592   -0.991    0.489
 P2C           C3     C    CR6       0.000     -4.773   -1.334   -1.262
 P2C           CL7    CL   CL        0.000     -4.606   -3.061   -1.184
 P2C           C2     C    CR6       0.000     -5.504   -0.754   -2.290
 P2C           O9     O    O2        0.000     -6.094   -1.538   -3.232
 P2C           O10    O    O2        0.000     -5.117   -1.707   -4.316
 P2C           O11    O    OH1       0.000     -5.753   -2.553   -5.334
 P2C           H11    H    H         0.000     -5.287   -2.806   -6.164
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 P2C      O20    n/a    C19    START
 P2C      C19    O20    C13    .
 P2C      O21    C19    .      .
 P2C      C13    C19    C14    .
 P2C      C12    C13    C17    .
 P2C      H12    C12    .      .
 P2C      C17    C12    C16    .
 P2C      H17    C17    .      .
 P2C      C16    C17    C15    .
 P2C      H16    C16    .      .
 P2C      C15    C16    H15    .
 P2C      H15    C15    .      .
 P2C      C14    C13    N18    .
 P2C      N18    C14    C5     .
 P2C      H18    N18    .      .
 P2C      C5     N18    C4     .
 P2C      C6     C5     C1     .
 P2C      H6     C6     .      .
 P2C      C1     C6     CL8    .
 P2C      CL8    C1     .      .
 P2C      C4     C5     C3     .
 P2C      H4     C4     .      .
 P2C      C3     C4     C2     .
 P2C      CL7    C3     .      .
 P2C      C2     C3     O9     .
 P2C      O9     C2     O10    .
 P2C      O10    O9     O11    .
 P2C      O11    O10    H11    .
 P2C      H11    O11    .      END
 P2C      C1     C2     .    ADD
 P2C      C14    C15    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 P2C      CL8    C1        single      1.795    0.020
 P2C      C1     C2        double      1.487    0.020
 P2C      C1     C6        single      1.390    0.020
 P2C      O9     C2        single      1.370    0.020
 P2C      C2     C3        single      1.487    0.020
 P2C      O10    O9        single      1.269    0.020
 P2C      O11    O10       single      1.369    0.020
 P2C      H11    O11       single      0.967    0.020
 P2C      CL7    C3        single      1.795    0.020
 P2C      C3     C4        double      1.390    0.020
 P2C      C4     C5        single      1.390    0.020
 P2C      H4     C4        single      1.083    0.020
 P2C      C6     C5        double      1.390    0.020
 P2C      H6     C6        single      1.083    0.020
 P2C      C5     N18       single      1.350    0.020
 P2C      N18    C14       single      1.350    0.020
 P2C      H18    N18       single      1.010    0.020
 P2C      C14    C15       double      1.390    0.020
 P2C      C14    C13       single      1.487    0.020
 P2C      C15    C16       single      1.390    0.020
 P2C      H15    C15       single      1.083    0.020
 P2C      C16    C17       double      1.390    0.020
 P2C      H16    C16       single      1.083    0.020
 P2C      C17    C12       single      1.390    0.020
 P2C      H17    C17       single      1.083    0.020
 P2C      C12    C13       double      1.390    0.020
 P2C      H12    C12       single      1.083    0.020
 P2C      C13    C19       single      1.500    0.020
 P2C      O21    C19       deloc       1.250    0.020
 P2C      C19    O20       deloc       1.250    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 P2C      O20    C19    O21     123.000    3.000
 P2C      O20    C19    C13     120.000    3.000
 P2C      O21    C19    C13     120.000    3.000
 P2C      C19    C13    C12     120.000    3.000
 P2C      C19    C13    C14     120.000    3.000
 P2C      C12    C13    C14     120.000    3.000
 P2C      C13    C12    H12     120.000    3.000
 P2C      C13    C12    C17     120.000    3.000
 P2C      H12    C12    C17     120.000    3.000
 P2C      C12    C17    H17     120.000    3.000
 P2C      C12    C17    C16     120.000    3.000
 P2C      H17    C17    C16     120.000    3.000
 P2C      C17    C16    H16     120.000    3.000
 P2C      C17    C16    C15     120.000    3.000
 P2C      H16    C16    C15     120.000    3.000
 P2C      C16    C15    H15     120.000    3.000
 P2C      C16    C15    C14     120.000    3.000
 P2C      H15    C15    C14     120.000    3.000
 P2C      C13    C14    N18     120.000    3.000
 P2C      C13    C14    C15     120.000    3.000
 P2C      N18    C14    C15     120.000    3.000
 P2C      C14    N18    H18     120.000    3.000
 P2C      C14    N18    C5      120.000    3.000
 P2C      H18    N18    C5      120.000    3.000
 P2C      N18    C5     C6      120.000    3.000
 P2C      N18    C5     C4      120.000    3.000
 P2C      C6     C5     C4      120.000    3.000
 P2C      C5     C6     H6      120.000    3.000
 P2C      C5     C6     C1      120.000    3.000
 P2C      H6     C6     C1      120.000    3.000
 P2C      C6     C1     CL8     120.000    3.000
 P2C      C6     C1     C2      120.000    3.000
 P2C      CL8    C1     C2      120.000    3.000
 P2C      C5     C4     H4      120.000    3.000
 P2C      C5     C4     C3      120.000    3.000
 P2C      H4     C4     C3      120.000    3.000
 P2C      C4     C3     CL7     120.000    3.000
 P2C      C4     C3     C2      120.000    3.000
 P2C      CL7    C3     C2      120.000    3.000
 P2C      C3     C2     O9      120.000    3.000
 P2C      C3     C2     C1      120.000    3.000
 P2C      O9     C2     C1      120.000    3.000
 P2C      C2     O9     O10     120.000    3.000
 P2C      O9     O10    O11     120.000    3.000
 P2C      O10    O11    H11     120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 P2C      var_1    O20    C19    C13    C14     -174.169   20.000   1
 P2C      CONST_1  C19    C13    C12    C17      180.000    0.000   0
 P2C      CONST_2  C13    C12    C17    C16        0.000    0.000   0
 P2C      CONST_3  C12    C17    C16    C15        0.000    0.000   0
 P2C      CONST_4  C17    C16    C15    C14        0.000    0.000   0
 P2C      CONST_5  C19    C13    C14    N18        0.000    0.000   0
 P2C      CONST_6  C13    C14    C15    C16        0.000    0.000   0
 P2C      var_2    C13    C14    N18    C5        77.381   20.000   1
 P2C      var_3    C14    N18    C5     C4        -4.052   20.000   1
 P2C      CONST_7  N18    C5     C6     C1       180.000    0.000   0
 P2C      CONST_8  C5     C6     C1     CL8      180.000    0.000   0
 P2C      CONST_9  C6     C1     C2     C3         0.000    0.000   0
 P2C      CONST_10 N18    C5     C4     C3       180.000    0.000   0
 P2C      CONST_11 C5     C4     C3     C2         0.000    0.000   0
 P2C      CONST_12 C4     C3     C2     O9       180.000    0.000   0
 P2C      var_4    C3     C2     O9     O10      -90.251   20.000   1
 P2C      var_5    C2     O9     O10    O11     -179.966   20.000   1
 P2C      var_6    O9     O10    O11    H11      179.984   20.000   1
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 P2C      plan-1    C1        0.020
 P2C      plan-1    CL8       0.020
 P2C      plan-1    C2        0.020
 P2C      plan-1    C6        0.020
 P2C      plan-1    C3        0.020
 P2C      plan-1    C4        0.020
 P2C      plan-1    C5        0.020
 P2C      plan-1    O9        0.020
 P2C      plan-1    CL7       0.020
 P2C      plan-1    H4        0.020
 P2C      plan-1    H6        0.020
 P2C      plan-1    N18       0.020
 P2C      plan-1    H18       0.020
 P2C      plan-2    N18       0.020
 P2C      plan-2    C5        0.020
 P2C      plan-2    C14       0.020
 P2C      plan-2    H18       0.020
 P2C      plan-3    C14       0.020
 P2C      plan-3    N18       0.020
 P2C      plan-3    C15       0.020
 P2C      plan-3    C13       0.020
 P2C      plan-3    C16       0.020
 P2C      plan-3    C17       0.020
 P2C      plan-3    C12       0.020
 P2C      plan-3    H15       0.020
 P2C      plan-3    H16       0.020
 P2C      plan-3    H17       0.020
 P2C      plan-3    H12       0.020
 P2C      plan-3    C19       0.020
 P2C      plan-3    H18       0.020
 P2C      plan-4    C19       0.020
 P2C      plan-4    C13       0.020
 P2C      plan-4    O21       0.020
 P2C      plan-4    O20       0.020
# ------------------------------------------------------