File: PDR.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (320 lines) | stat: -rw-r--r-- 14,485 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
PDR      PDR '3-(4-chloro-1H-pyrrolo[2,3-b]pyridin' non-polymer        39  24 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_PDR
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 PDR           CL     CL   CL        0.000      0.000    0.000    0.000
 PDR           C18    C    CR6       0.000     -1.257    1.002   -0.656
 PDR           C15    C    CR16      0.000     -0.963    2.220   -1.243
 PDR           H15    H    H         0.000      0.062    2.563   -1.307
 PDR           C16    C    CR16      0.000     -1.993    2.998   -1.748
 PDR           H16    H    H         0.000     -1.761    3.955   -2.198
 PDR           N17    N    NRD6      0.000     -3.248    2.601   -1.694
 PDR           C11    C    CR56      0.000     -3.590    1.442   -1.148
 PDR           C10    C    CR56      0.000     -2.597    0.603   -0.606
 PDR           C14    C    CR15      0.000     -3.288   -0.577   -0.090
 PDR           H14    H    H         0.000     -2.833   -1.431    0.396
 PDR           C13    C    CR5       0.000     -4.610   -0.397   -0.337
 PDR           N12    N    NR15      0.000     -4.799    0.810   -0.970
 PDR           HN12   H    H         0.000     -5.720    1.189   -1.270
 PDR           C7     C    CR5       0.000     -5.682   -1.349    0.020
 PDR           C8     C    CR15      0.000     -5.627   -2.703   -0.078
 PDR           H8     H    H         0.000     -4.775   -3.270   -0.433
 PDR           N9     N    NR5       0.000     -6.810   -3.241    0.338
 PDR           C20    C    CH3       0.000     -7.115   -4.674    0.371
 PDR           H20B   H    H         0.000     -6.222   -5.216    0.528
 PDR           H20A   H    H         0.000     -7.794   -4.867    1.158
 PDR           H20    H    H         0.000     -7.548   -4.959   -0.551
 PDR           C2     C    CR56      0.000     -7.673   -2.241    0.732
 PDR           C1     C    CR56      0.000     -7.014   -1.015    0.551
 PDR           N6     N    NRD6      0.000     -7.618    0.131    0.853
 PDR           C5     C    CR6       0.000     -8.847    0.156    1.330
 PDR           O21    O    O2        0.000     -9.426    1.348    1.625
 PDR           C22    C    CH3       0.000     -8.645    2.522    1.394
 PDR           H22B   H    H         0.000     -8.386    2.578    0.368
 PDR           H22A   H    H         0.000     -9.207    3.379    1.662
 PDR           H22    H    H         0.000     -7.763    2.482    1.978
 PDR           C4     C    CR6       0.000     -9.563   -1.027    1.537
 PDR           C3     C    CR16      0.000     -8.973   -2.242    1.236
 PDR           H3     H    H         0.000     -9.507   -3.172    1.388
 PDR           O23    O    O2        0.000    -10.830   -0.983    2.030
 PDR           C24    C    CH3       0.000    -11.498   -2.233    2.213
 PDR           H24B   H    H         0.000    -11.571   -2.735    1.284
 PDR           H24A   H    H         0.000    -10.949   -2.830    2.894
 PDR           H24    H    H         0.000    -12.469   -2.061    2.599
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 PDR      CL     n/a    C18    START
 PDR      C18    CL     C10    .
 PDR      C15    C18    C16    .
 PDR      H15    C15    .      .
 PDR      C16    C15    N17    .
 PDR      H16    C16    .      .
 PDR      N17    C16    C11    .
 PDR      C11    N17    .      .
 PDR      C10    C18    C14    .
 PDR      C14    C10    C13    .
 PDR      H14    C14    .      .
 PDR      C13    C14    C7     .
 PDR      N12    C13    HN12   .
 PDR      HN12   N12    .      .
 PDR      C7     C13    C1     .
 PDR      C8     C7     N9     .
 PDR      H8     C8     .      .
 PDR      N9     C8     C2     .
 PDR      C20    N9     H20    .
 PDR      H20B   C20    .      .
 PDR      H20A   C20    .      .
 PDR      H20    C20    .      .
 PDR      C2     N9     .      .
 PDR      C1     C7     N6     .
 PDR      N6     C1     C5     .
 PDR      C5     N6     C4     .
 PDR      O21    C5     C22    .
 PDR      C22    O21    H22    .
 PDR      H22B   C22    .      .
 PDR      H22A   C22    .      .
 PDR      H22    C22    .      .
 PDR      C4     C5     O23    .
 PDR      C3     C4     H3     .
 PDR      H3     C3     .      .
 PDR      O23    C4     C24    .
 PDR      C24    O23    H24    .
 PDR      H24B   C24    .      .
 PDR      H24A   C24    .      .
 PDR      H24    C24    .      END
 PDR      C1     C2     .    ADD
 PDR      C2     C3     .    ADD
 PDR      C10    C11    .    ADD
 PDR      C11    N12    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 PDR      C18    CL        single      1.795    0.020
 PDR      C1     C2        double      1.490    0.020
 PDR      N6     C1        single      1.355    0.020
 PDR      C1     C7        single      1.490    0.020
 PDR      C2     C3        single      1.390    0.020
 PDR      C2     N9        single      1.337    0.020
 PDR      C3     C4        double      1.390    0.020
 PDR      C4     C5        single      1.487    0.020
 PDR      O23    C4        single      1.370    0.020
 PDR      C5     N6        double      1.350    0.020
 PDR      O21    C5        single      1.370    0.020
 PDR      C8     C7        double      1.387    0.020
 PDR      C7     C13       single      1.490    0.020
 PDR      N9     C8        single      1.337    0.020
 PDR      C20    N9        single      1.485    0.020
 PDR      C10    C11       double      1.490    0.020
 PDR      C14    C10       single      1.440    0.020
 PDR      C10    C18       single      1.490    0.020
 PDR      C11    N12       single      1.340    0.020
 PDR      C11    N17       single      1.355    0.020
 PDR      N12    C13       single      1.340    0.020
 PDR      C13    C14       double      1.387    0.020
 PDR      C16    C15       single      1.390    0.020
 PDR      C15    C18       double      1.390    0.020
 PDR      N17    C16       double      1.337    0.020
 PDR      C22    O21       single      1.426    0.020
 PDR      C24    O23       single      1.426    0.020
 PDR      H3     C3        single      1.083    0.020
 PDR      H8     C8        single      1.083    0.020
 PDR      HN12   N12       single      1.040    0.020
 PDR      H14    C14       single      1.083    0.020
 PDR      H15    C15       single      1.083    0.020
 PDR      H16    C16       single      1.083    0.020
 PDR      H20    C20       single      1.059    0.020
 PDR      H20A   C20       single      1.059    0.020
 PDR      H20B   C20       single      1.059    0.020
 PDR      H22    C22       single      1.059    0.020
 PDR      H22A   C22       single      1.059    0.020
 PDR      H22B   C22       single      1.059    0.020
 PDR      H24    C24       single      1.059    0.020
 PDR      H24A   C24       single      1.059    0.020
 PDR      H24B   C24       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 PDR      CL     C18    C15     120.000    3.000
 PDR      CL     C18    C10     120.000    3.000
 PDR      C15    C18    C10     120.000    3.000
 PDR      C18    C15    H15     120.000    3.000
 PDR      C18    C15    C16     120.000    3.000
 PDR      H15    C15    C16     120.000    3.000
 PDR      C15    C16    H16     120.000    3.000
 PDR      C15    C16    N17     120.000    3.000
 PDR      H16    C16    N17     120.000    3.000
 PDR      C16    N17    C11     120.000    3.000
 PDR      N17    C11    C10     120.000    3.000
 PDR      N17    C11    N12     132.000    3.000
 PDR      C10    C11    N12     108.000    3.000
 PDR      C18    C10    C14     132.000    3.000
 PDR      C18    C10    C11     120.000    3.000
 PDR      C14    C10    C11     120.000    3.000
 PDR      C10    C14    H14     108.000    3.000
 PDR      C10    C14    C13     108.000    3.000
 PDR      H14    C14    C13     126.000    3.000
 PDR      C14    C13    N12     108.000    3.000
 PDR      C14    C13    C7      108.000    3.000
 PDR      N12    C13    C7      108.000    3.000
 PDR      C13    N12    HN12    126.000    3.000
 PDR      C13    N12    C11     108.000    3.000
 PDR      HN12   N12    C11     126.000    3.000
 PDR      C13    C7     C8      108.000    3.000
 PDR      C13    C7     C1      108.000    3.000
 PDR      C8     C7     C1      108.000    3.000
 PDR      C7     C8     H8      126.000    3.000
 PDR      C7     C8     N9      108.000    3.000
 PDR      H8     C8     N9      126.000    3.000
 PDR      C8     N9     C20     126.000    3.000
 PDR      C8     N9     C2      108.000    3.000
 PDR      C20    N9     C2      126.000    3.000
 PDR      N9     C20    H20B    109.470    3.000
 PDR      N9     C20    H20A    109.470    3.000
 PDR      N9     C20    H20     109.470    3.000
 PDR      H20B   C20    H20A    109.470    3.000
 PDR      H20B   C20    H20     109.470    3.000
 PDR      H20A   C20    H20     109.470    3.000
 PDR      N9     C2     C1      108.000    3.000
 PDR      N9     C2     C3      132.000    3.000
 PDR      C1     C2     C3      120.000    3.000
 PDR      C7     C1     N6      120.000    3.000
 PDR      C7     C1     C2      108.000    3.000
 PDR      N6     C1     C2      120.000    3.000
 PDR      C1     N6     C5      120.000    3.000
 PDR      N6     C5     O21     120.000    3.000
 PDR      N6     C5     C4      120.000    3.000
 PDR      O21    C5     C4      120.000    3.000
 PDR      C5     O21    C22     120.000    3.000
 PDR      O21    C22    H22B    109.470    3.000
 PDR      O21    C22    H22A    109.470    3.000
 PDR      O21    C22    H22     109.470    3.000
 PDR      H22B   C22    H22A    109.470    3.000
 PDR      H22B   C22    H22     109.470    3.000
 PDR      H22A   C22    H22     109.470    3.000
 PDR      C5     C4     C3      120.000    3.000
 PDR      C5     C4     O23     120.000    3.000
 PDR      C3     C4     O23     120.000    3.000
 PDR      C4     C3     H3      120.000    3.000
 PDR      C4     C3     C2      120.000    3.000
 PDR      H3     C3     C2      120.000    3.000
 PDR      C4     O23    C24     120.000    3.000
 PDR      O23    C24    H24B    109.470    3.000
 PDR      O23    C24    H24A    109.470    3.000
 PDR      O23    C24    H24     109.470    3.000
 PDR      H24B   C24    H24A    109.470    3.000
 PDR      H24B   C24    H24     109.470    3.000
 PDR      H24A   C24    H24     109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 PDR      CONST_1  CL     C18    C15    C16      180.000    0.000   0
 PDR      CONST_2  C18    C15    C16    N17        0.000    0.000   0
 PDR      CONST_3  C15    C16    N17    C11        0.000    0.000   0
 PDR      CONST_4  C16    N17    C11    C10        0.000    0.000   0
 PDR      CONST_5  N17    C11    N12    C13      180.000    0.000   0
 PDR      CONST_6  CL     C18    C10    C14        0.000    0.000   0
 PDR      CONST_7  C18    C10    C11    N17        0.000    0.000   0
 PDR      CONST_8  C18    C10    C14    C13      180.000    0.000   0
 PDR      CONST_9  C10    C14    C13    C7       180.000    0.000   0
 PDR      CONST_10 C14    C13    N12    C11        0.000    0.000   0
 PDR      CONST_11 C14    C13    C7     C1       180.000    0.000   0
 PDR      CONST_12 C13    C7     C8     N9       180.000    0.000   0
 PDR      CONST_13 C7     C8     N9     C2         0.000    0.000   0
 PDR      var_1    C8     N9     C20    H20      -90.487   20.000   1
 PDR      CONST_14 C8     N9     C2     C1         0.000    0.000   0
 PDR      CONST_15 N9     C2     C3     C4       180.000    0.000   0
 PDR      CONST_16 C13    C7     C1     N6         0.000    0.000   0
 PDR      CONST_17 C7     C1     C2     N9         0.000    0.000   0
 PDR      CONST_18 C7     C1     N6     C5       180.000    0.000   0
 PDR      CONST_19 C1     N6     C5     C4         0.000    0.000   0
 PDR      var_2    N6     C5     O21    C22       -0.033   20.000   1
 PDR      var_3    C5     O21    C22    H22      -59.969   20.000   1
 PDR      CONST_20 N6     C5     C4     O23      180.000    0.000   0
 PDR      CONST_21 C5     C4     C3     C2         0.000    0.000   0
 PDR      var_4    C5     C4     O23    C24      179.997   20.000   1
 PDR      var_5    C4     O23    C24    H24     -179.977   20.000   1
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 PDR      plan-1    C1        0.020
 PDR      plan-1    C2        0.020
 PDR      plan-1    N6        0.020
 PDR      plan-1    C7        0.020
 PDR      plan-1    C8        0.020
 PDR      plan-1    N9        0.020
 PDR      plan-1    C3        0.020
 PDR      plan-1    C4        0.020
 PDR      plan-1    H3        0.020
 PDR      plan-1    C5        0.020
 PDR      plan-1    O23       0.020
 PDR      plan-1    O21       0.020
 PDR      plan-1    C13       0.020
 PDR      plan-1    H8        0.020
 PDR      plan-1    C20       0.020
 PDR      plan-2    C10       0.020
 PDR      plan-2    C11       0.020
 PDR      plan-2    C14       0.020
 PDR      plan-2    C18       0.020
 PDR      plan-2    C15       0.020
 PDR      plan-2    C16       0.020
 PDR      plan-2    N17       0.020
 PDR      plan-2    N12       0.020
 PDR      plan-2    C13       0.020
 PDR      plan-2    HN12      0.020
 PDR      plan-2    C7        0.020
 PDR      plan-2    H14       0.020
 PDR      plan-2    H15       0.020
 PDR      plan-2    H16       0.020
 PDR      plan-2    CL        0.020
# ------------------------------------------------------