File: PFL.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (254 lines) | stat: -rw-r--r-- 10,961 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
PFL      PFL '2,6-BIS(1-METHYLETHYL)PHENOL        ' non-polymer        31  13 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_PFL
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 PFL           O1     O    OH1       0.000      0.000    0.000    0.000
 PFL           HO1    H    H         0.000      0.303   -0.918    0.004
 PFL           C1     C    CR6       0.000     -1.359    0.028    0.000
 PFL           C6     C    CR6       0.000     -2.053    0.048    1.200
 PFL           C10    C    CH1       0.000     -1.303    0.033    2.507
 PFL           H10    H    H         0.000     -0.222    0.011    2.309
 PFL           C12    C    CH3       0.000     -1.698   -1.207    3.308
 PFL           H123   H    H         0.000     -1.460   -2.078    2.753
 PFL           H122   H    H         0.000     -1.170   -1.219    4.226
 PFL           H121   H    H         0.000     -2.740   -1.187    3.501
 PFL           C11    C    CH3       0.000     -1.648    1.290    3.308
 PFL           H113   H    H         0.000     -1.374    2.150    2.753
 PFL           H112   H    H         0.000     -2.690    1.312    3.500
 PFL           H111   H    H         0.000     -1.120    1.280    4.227
 PFL           C5     C    CR16      0.000     -3.434    0.077    1.198
 PFL           HC5    H    H         0.000     -3.976    0.088    2.135
 PFL           C4     C    CR16      0.000     -4.124    0.091    0.000
 PFL           HC4    H    H         0.000     -5.206    0.113    0.000
 PFL           C3     C    CR16      0.000     -3.434    0.078   -1.198
 PFL           HC3    H    H         0.000     -3.976    0.091   -2.135
 PFL           C2     C    CR6       0.000     -2.053    0.048   -1.200
 PFL           C7     C    CH1       0.000     -1.303    0.033   -2.507
 PFL           HC7    H    H         0.000     -0.222    0.011   -2.308
 PFL           C9     C    CH3       0.000     -1.647    1.288   -3.309
 PFL           H93    H    H         0.000     -1.372    2.149   -2.755
 PFL           H92    H    H         0.000     -1.120    1.278   -4.228
 PFL           H91    H    H         0.000     -2.689    1.311   -3.501
 PFL           C8     C    CH3       0.000     -1.698   -1.208   -3.308
 PFL           H83    H    H         0.000     -1.459   -2.079   -2.754
 PFL           H82    H    H         0.000     -2.740   -1.189   -3.500
 PFL           H81    H    H         0.000     -1.171   -1.220   -4.227
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 PFL      O1     n/a    C1     START
 PFL      HO1    O1     .      .
 PFL      C1     O1     C6     .
 PFL      C6     C1     C5     .
 PFL      C10    C6     C11    .
 PFL      H10    C10    .      .
 PFL      C12    C10    H121   .
 PFL      H123   C12    .      .
 PFL      H122   C12    .      .
 PFL      H121   C12    .      .
 PFL      C11    C10    H111   .
 PFL      H113   C11    .      .
 PFL      H112   C11    .      .
 PFL      H111   C11    .      .
 PFL      C5     C6     C4     .
 PFL      HC5    C5     .      .
 PFL      C4     C5     C3     .
 PFL      HC4    C4     .      .
 PFL      C3     C4     C2     .
 PFL      HC3    C3     .      .
 PFL      C2     C3     C7     .
 PFL      C7     C2     C8     .
 PFL      HC7    C7     .      .
 PFL      C9     C7     H91    .
 PFL      H93    C9     .      .
 PFL      H92    C9     .      .
 PFL      H91    C9     .      .
 PFL      C8     C7     H81    .
 PFL      H83    C8     .      .
 PFL      H82    C8     .      .
 PFL      H81    C8     .      END
 PFL      C1     C2     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 PFL      C1     O1        single      1.362    0.020
 PFL      HO1    O1        single      0.967    0.020
 PFL      C1     C2        double      1.487    0.020
 PFL      C6     C1        single      1.487    0.020
 PFL      C2     C3        single      1.390    0.020
 PFL      C7     C2        single      1.480    0.020
 PFL      C5     C6        double      1.390    0.020
 PFL      C10    C6        single      1.480    0.020
 PFL      C3     C4        double      1.390    0.020
 PFL      HC3    C3        single      1.083    0.020
 PFL      C8     C7        single      1.524    0.020
 PFL      C9     C7        single      1.524    0.020
 PFL      HC7    C7        single      1.099    0.020
 PFL      C4     C5        single      1.390    0.020
 PFL      HC4    C4        single      1.083    0.020
 PFL      HC5    C5        single      1.083    0.020
 PFL      C11    C10       single      1.524    0.020
 PFL      C12    C10       single      1.524    0.020
 PFL      H10    C10       single      1.099    0.020
 PFL      H81    C8        single      1.059    0.020
 PFL      H82    C8        single      1.059    0.020
 PFL      H83    C8        single      1.059    0.020
 PFL      H91    C9        single      1.059    0.020
 PFL      H92    C9        single      1.059    0.020
 PFL      H93    C9        single      1.059    0.020
 PFL      H111   C11       single      1.059    0.020
 PFL      H112   C11       single      1.059    0.020
 PFL      H113   C11       single      1.059    0.020
 PFL      H121   C12       single      1.059    0.020
 PFL      H122   C12       single      1.059    0.020
 PFL      H123   C12       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 PFL      HO1    O1     C1      109.470    3.000
 PFL      O1     C1     C6      120.000    3.000
 PFL      O1     C1     C2      120.000    3.000
 PFL      C6     C1     C2      120.000    3.000
 PFL      C1     C6     C10     120.000    3.000
 PFL      C1     C6     C5      120.000    3.000
 PFL      C10    C6     C5      120.000    3.000
 PFL      C6     C10    H10     109.470    3.000
 PFL      C6     C10    C12     109.470    3.000
 PFL      C6     C10    C11     109.470    3.000
 PFL      H10    C10    C12     108.340    3.000
 PFL      H10    C10    C11     108.340    3.000
 PFL      C12    C10    C11     111.000    3.000
 PFL      C10    C12    H123    109.470    3.000
 PFL      C10    C12    H122    109.470    3.000
 PFL      C10    C12    H121    109.470    3.000
 PFL      H123   C12    H122    109.470    3.000
 PFL      H123   C12    H121    109.470    3.000
 PFL      H122   C12    H121    109.470    3.000
 PFL      C10    C11    H113    109.470    3.000
 PFL      C10    C11    H112    109.470    3.000
 PFL      C10    C11    H111    109.470    3.000
 PFL      H113   C11    H112    109.470    3.000
 PFL      H113   C11    H111    109.470    3.000
 PFL      H112   C11    H111    109.470    3.000
 PFL      C6     C5     HC5     120.000    3.000
 PFL      C6     C5     C4      120.000    3.000
 PFL      HC5    C5     C4      120.000    3.000
 PFL      C5     C4     HC4     120.000    3.000
 PFL      C5     C4     C3      120.000    3.000
 PFL      HC4    C4     C3      120.000    3.000
 PFL      C4     C3     HC3     120.000    3.000
 PFL      C4     C3     C2      120.000    3.000
 PFL      HC3    C3     C2      120.000    3.000
 PFL      C3     C2     C7      120.000    3.000
 PFL      C3     C2     C1      120.000    3.000
 PFL      C7     C2     C1      120.000    3.000
 PFL      C2     C7     HC7     109.470    3.000
 PFL      C2     C7     C9      109.470    3.000
 PFL      C2     C7     C8      109.470    3.000
 PFL      HC7    C7     C9      108.340    3.000
 PFL      HC7    C7     C8      108.340    3.000
 PFL      C9     C7     C8      111.000    3.000
 PFL      C7     C9     H93     109.470    3.000
 PFL      C7     C9     H92     109.470    3.000
 PFL      C7     C9     H91     109.470    3.000
 PFL      H93    C9     H92     109.470    3.000
 PFL      H93    C9     H91     109.470    3.000
 PFL      H92    C9     H91     109.470    3.000
 PFL      C7     C8     H83     109.470    3.000
 PFL      C7     C8     H82     109.470    3.000
 PFL      C7     C8     H81     109.470    3.000
 PFL      H83    C8     H82     109.470    3.000
 PFL      H83    C8     H81     109.470    3.000
 PFL      H82    C8     H81     109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 PFL      var_1    HO1    O1     C1     C6        90.004   20.000   1
 PFL      CONST_1  O1     C1     C2     C3       180.000    0.000   0
 PFL      CONST_2  O1     C1     C6     C5       180.000    0.000   0
 PFL      var_2    C1     C6     C10    C11      120.219   20.000   1
 PFL      var_3    C6     C10    C12    H121     -60.087   20.000   3
 PFL      var_4    C6     C10    C11    H111    -179.953   20.000   3
 PFL      CONST_3  C1     C6     C5     C4         0.000    0.000   0
 PFL      CONST_4  C6     C5     C4     C3         0.000    0.000   0
 PFL      CONST_5  C5     C4     C3     C2         0.000    0.000   0
 PFL      CONST_6  C4     C3     C2     C7       180.000    0.000   0
 PFL      var_5    C3     C2     C7     C8       -60.142   20.000   1
 PFL      var_6    C2     C7     C9     H91      -59.997   20.000   3
 PFL      var_7    C2     C7     C8     H81     -179.973   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 PFL      chir_01  C7     C2     C8     C9        negativ
 PFL      chir_02  C10    C6     C11    C12       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 PFL      plan-1    C1        0.020
 PFL      plan-1    O1        0.020
 PFL      plan-1    C2        0.020
 PFL      plan-1    C6        0.020
 PFL      plan-1    C3        0.020
 PFL      plan-1    C4        0.020
 PFL      plan-1    C5        0.020
 PFL      plan-1    C7        0.020
 PFL      plan-1    C10       0.020
 PFL      plan-1    HC3       0.020
 PFL      plan-1    HC4       0.020
 PFL      plan-1    HC5       0.020
# ------------------------------------------------------