File: PHR.cif

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global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
PHR      PHR '3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,8-' non-polymer        57  32 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_PHR
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 PHR           O1     O    O         0.000      0.000    0.000    0.000
 PHR           C2     C    CR6       0.000     -1.184   -0.122   -0.250
 PHR           N3     N    NR16      0.000     -1.878    0.942   -0.690
 PHR           H3     H    H         0.000     -1.397    1.856   -0.814
 PHR           C4     C    CR6       0.000     -3.194    0.837   -0.971
 PHR           O2     O    O         0.000     -3.819    1.804   -1.369
 PHR           N1     N    NR16      0.000     -1.774   -1.321   -0.082
 PHR           H1     H    H         0.000     -1.216   -2.129    0.259
 PHR           C8     C    CR56      0.000     -3.112   -1.479   -0.359
 PHR           C9     C    CR56      0.000     -3.835   -0.408   -0.808
 PHR           N7     N    NR5       0.000     -3.964   -2.553   -0.295
 PHR           C10    C    CH2       0.000     -3.599   -3.906    0.134
 PHR           H101   H    H         0.000     -4.463   -4.386    0.597
 PHR           H102   H    H         0.000     -2.784   -3.850    0.858
 PHR           C11    C    CH1       0.000     -3.150   -4.721   -1.080
 PHR           H11    H    H         0.000     -3.938   -4.701   -1.846
 PHR           C12    C    CH1       0.000     -2.888   -6.167   -0.654
 PHR           H12    H    H         0.000     -3.830   -6.628   -0.326
 PHR           C13    C    CH1       0.000     -2.321   -6.953   -1.838
 PHR           H13    H    H         0.000     -1.379   -6.491   -2.166
 PHR           C14    C    CH2       0.000     -2.059   -8.399   -1.412
 PHR           H141   H    H         0.000     -3.008   -8.883   -1.170
 PHR           H142   H    H         0.000     -1.412   -8.407   -0.533
 PHR           O26    O    OH1       0.000     -1.423   -9.103   -2.480
 PHR           H26    H    H         0.000     -1.258  -10.016   -2.210
 PHR           O23    O    OH1       0.000     -3.260   -6.936   -2.915
 PHR           H23    H    H         0.000     -4.089   -7.342   -2.626
 PHR           O21    O    OH1       0.000     -1.950   -6.185    0.423
 PHR           H21    H    H         0.000     -1.121   -5.778    0.134
 PHR           O19    O    OH1       0.000     -1.951   -4.157   -1.615
 PHR           H19    H    H         0.000     -1.258   -4.175   -0.941
 PHR           C6     C    CR5       0.000     -5.191   -2.158   -0.684
 PHR           O4     O    O         0.000     -6.179   -2.867   -0.736
 PHR           N5     N    NR5       0.000     -5.147   -0.849   -1.005
 PHR           C15    C    CH2       0.000     -6.272   -0.036   -1.475
 PHR           H151   H    H         0.000     -6.972   -0.667   -2.026
 PHR           H152   H    H         0.000     -5.900    0.753   -2.132
 PHR           C16    C    CH2       0.000     -6.984    0.591   -0.275
 PHR           H161   H    H         0.000     -6.283    1.221    0.275
 PHR           H162   H    H         0.000     -7.355   -0.199    0.381
 PHR           C17    C    CH2       0.000     -8.158    1.441   -0.766
 PHR           H171   H    H         0.000     -8.858    0.809   -1.318
 PHR           H172   H    H         0.000     -7.786    2.229   -1.424
 PHR           C18    C    CH2       0.000     -8.871    2.068    0.434
 PHR           H181   H    H         0.000     -8.170    2.699    0.984
 PHR           H182   H    H         0.000     -9.241    1.278    1.090
 PHR           C19    C    CH2       0.000    -10.046    2.917   -0.058
 PHR           H191   H    H         0.000    -10.746    2.285   -0.608
 PHR           H192   H    H         0.000     -9.675    3.706   -0.716
 PHR           C20    C    CH2       0.000    -10.758    3.545    1.142
 PHR           H201   H    H         0.000    -10.056    4.176    1.692
 PHR           H202   H    H         0.000    -11.127    2.755    1.800
 PHR           O27    O    O2        0.000    -11.855    4.337    0.683
 PHR           P      P    P         0.000    -12.555    4.965    1.991
 PHR           O2P    O    OP       -0.666    -13.652    5.917    1.568
 PHR           O3P    O    OP       -0.666    -11.523    5.714    2.806
 PHR           O1P    O    OP       -0.666    -13.147    3.852    2.828
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 PHR      O1     n/a    C2     START
 PHR      C2     O1     N1     .
 PHR      N3     C2     C4     .
 PHR      H3     N3     .      .
 PHR      C4     N3     O2     .
 PHR      O2     C4     .      .
 PHR      N1     C2     C8     .
 PHR      H1     N1     .      .
 PHR      C8     N1     N7     .
 PHR      C9     C8     .      .
 PHR      N7     C8     C6     .
 PHR      C10    N7     C11    .
 PHR      H101   C10    .      .
 PHR      H102   C10    .      .
 PHR      C11    C10    O19    .
 PHR      H11    C11    .      .
 PHR      C12    C11    O21    .
 PHR      H12    C12    .      .
 PHR      C13    C12    O23    .
 PHR      H13    C13    .      .
 PHR      C14    C13    O26    .
 PHR      H141   C14    .      .
 PHR      H142   C14    .      .
 PHR      O26    C14    H26    .
 PHR      H26    O26    .      .
 PHR      O23    C13    H23    .
 PHR      H23    O23    .      .
 PHR      O21    C12    H21    .
 PHR      H21    O21    .      .
 PHR      O19    C11    H19    .
 PHR      H19    O19    .      .
 PHR      C6     N7     N5     .
 PHR      O4     C6     .      .
 PHR      N5     C6     C15    .
 PHR      C15    N5     C16    .
 PHR      H151   C15    .      .
 PHR      H152   C15    .      .
 PHR      C16    C15    C17    .
 PHR      H161   C16    .      .
 PHR      H162   C16    .      .
 PHR      C17    C16    C18    .
 PHR      H171   C17    .      .
 PHR      H172   C17    .      .
 PHR      C18    C17    C19    .
 PHR      H181   C18    .      .
 PHR      H182   C18    .      .
 PHR      C19    C18    C20    .
 PHR      H191   C19    .      .
 PHR      H192   C19    .      .
 PHR      C20    C19    O27    .
 PHR      H201   C20    .      .
 PHR      H202   C20    .      .
 PHR      O27    C20    P      .
 PHR      P      O27    O1P    .
 PHR      O2P    P      .      .
 PHR      O3P    P      .      .
 PHR      O1P    P      .      END
 PHR      N5     C9     .    ADD
 PHR      C9     C4     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 PHR      O2P    P         deloc       1.510    0.020
 PHR      O3P    P         deloc       1.510    0.020
 PHR      O1P    P         deloc       1.510    0.020
 PHR      P      O27       single      1.610    0.020
 PHR      O27    C20       single      1.426    0.020
 PHR      C20    C19       single      1.524    0.020
 PHR      H201   C20       single      1.092    0.020
 PHR      H202   C20       single      1.092    0.020
 PHR      C19    C18       single      1.524    0.020
 PHR      H191   C19       single      1.092    0.020
 PHR      H192   C19       single      1.092    0.020
 PHR      C18    C17       single      1.524    0.020
 PHR      H181   C18       single      1.092    0.020
 PHR      H182   C18       single      1.092    0.020
 PHR      C17    C16       single      1.524    0.020
 PHR      H171   C17       single      1.092    0.020
 PHR      H172   C17       single      1.092    0.020
 PHR      C16    C15       single      1.524    0.020
 PHR      H161   C16       single      1.092    0.020
 PHR      H162   C16       single      1.092    0.020
 PHR      C15    N5        single      1.462    0.020
 PHR      H151   C15       single      1.092    0.020
 PHR      H152   C15       single      1.092    0.020
 PHR      N5     C9        single      1.337    0.020
 PHR      N5     C6        single      1.337    0.020
 PHR      C9     C4        single      1.490    0.020
 PHR      C9     C8        double      1.490    0.020
 PHR      O2     C4        double      1.250    0.020
 PHR      C4     N3        single      1.337    0.020
 PHR      N3     C2        single      1.337    0.020
 PHR      H3     N3        single      1.040    0.020
 PHR      O4     C6        double      1.285    0.020
 PHR      C6     N7        single      1.337    0.020
 PHR      N7     C8        single      1.337    0.020
 PHR      C10    N7        single      1.462    0.020
 PHR      C8     N1        single      1.337    0.020
 PHR      N1     C2        single      1.337    0.020
 PHR      H1     N1        single      1.040    0.020
 PHR      C2     O1        double      1.250    0.020
 PHR      C11    C10       single      1.524    0.020
 PHR      H101   C10       single      1.092    0.020
 PHR      H102   C10       single      1.092    0.020
 PHR      O19    C11       single      1.432    0.020
 PHR      C12    C11       single      1.524    0.020
 PHR      H11    C11       single      1.099    0.020
 PHR      H19    O19       single      0.967    0.020
 PHR      O21    C12       single      1.432    0.020
 PHR      C13    C12       single      1.524    0.020
 PHR      H12    C12       single      1.099    0.020
 PHR      H21    O21       single      0.967    0.020
 PHR      O23    C13       single      1.432    0.020
 PHR      C14    C13       single      1.524    0.020
 PHR      H13    C13       single      1.099    0.020
 PHR      H23    O23       single      0.967    0.020
 PHR      O26    C14       single      1.432    0.020
 PHR      H141   C14       single      1.092    0.020
 PHR      H142   C14       single      1.092    0.020
 PHR      H26    O26       single      0.967    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 PHR      O1     C2     N3      120.000    3.000
 PHR      O1     C2     N1      120.000    3.000
 PHR      N3     C2     N1      120.000    3.000
 PHR      C2     N3     H3      120.000    3.000
 PHR      C2     N3     C4      120.000    3.000
 PHR      H3     N3     C4      120.000    3.000
 PHR      N3     C4     O2      120.000    3.000
 PHR      N3     C4     C9      120.000    3.000
 PHR      O2     C4     C9      120.000    3.000
 PHR      C2     N1     H1      120.000    3.000
 PHR      C2     N1     C8      120.000    3.000
 PHR      H1     N1     C8      120.000    3.000
 PHR      N1     C8     C9      120.000    3.000
 PHR      N1     C8     N7      132.000    3.000
 PHR      C9     C8     N7      108.000    3.000
 PHR      C8     C9     N5      108.000    3.000
 PHR      C8     C9     C4      120.000    3.000
 PHR      N5     C9     C4      120.000    3.000
 PHR      C8     N7     C10     126.000    3.000
 PHR      C8     N7     C6      108.000    3.000
 PHR      C10    N7     C6      126.000    3.000
 PHR      N7     C10    H101    109.500    3.000
 PHR      N7     C10    H102    109.500    3.000
 PHR      N7     C10    C11     109.500    3.000
 PHR      H101   C10    H102    107.900    3.000
 PHR      H101   C10    C11     109.470    3.000
 PHR      H102   C10    C11     109.470    3.000
 PHR      C10    C11    H11     108.340    3.000
 PHR      C10    C11    C12     111.000    3.000
 PHR      C10    C11    O19     109.470    3.000
 PHR      H11    C11    C12     108.340    3.000
 PHR      H11    C11    O19     109.470    3.000
 PHR      C12    C11    O19     109.470    3.000
 PHR      C11    C12    H12     108.340    3.000
 PHR      C11    C12    C13     111.000    3.000
 PHR      C11    C12    O21     109.470    3.000
 PHR      H12    C12    C13     108.340    3.000
 PHR      H12    C12    O21     109.470    3.000
 PHR      C13    C12    O21     109.470    3.000
 PHR      C12    C13    H13     108.340    3.000
 PHR      C12    C13    C14     111.000    3.000
 PHR      C12    C13    O23     109.470    3.000
 PHR      H13    C13    C14     108.340    3.000
 PHR      H13    C13    O23     109.470    3.000
 PHR      C14    C13    O23     109.470    3.000
 PHR      C13    C14    H141    109.470    3.000
 PHR      C13    C14    H142    109.470    3.000
 PHR      C13    C14    O26     109.470    3.000
 PHR      H141   C14    H142    107.900    3.000
 PHR      H141   C14    O26     109.470    3.000
 PHR      H142   C14    O26     109.470    3.000
 PHR      C14    O26    H26     109.470    3.000
 PHR      C13    O23    H23     109.470    3.000
 PHR      C12    O21    H21     109.470    3.000
 PHR      C11    O19    H19     109.470    3.000
 PHR      N7     C6     O4      108.000    3.000
 PHR      N7     C6     N5      108.000    3.000
 PHR      O4     C6     N5      108.000    3.000
 PHR      C6     N5     C15     126.000    3.000
 PHR      C6     N5     C9      108.000    3.000
 PHR      C15    N5     C9      126.000    3.000
 PHR      N5     C15    H151    109.500    3.000
 PHR      N5     C15    H152    109.500    3.000
 PHR      N5     C15    C16     109.500    3.000
 PHR      H151   C15    H152    107.900    3.000
 PHR      H151   C15    C16     109.470    3.000
 PHR      H152   C15    C16     109.470    3.000
 PHR      C15    C16    H161    109.470    3.000
 PHR      C15    C16    H162    109.470    3.000
 PHR      C15    C16    C17     111.000    3.000
 PHR      H161   C16    H162    107.900    3.000
 PHR      H161   C16    C17     109.470    3.000
 PHR      H162   C16    C17     109.470    3.000
 PHR      C16    C17    H171    109.470    3.000
 PHR      C16    C17    H172    109.470    3.000
 PHR      C16    C17    C18     111.000    3.000
 PHR      H171   C17    H172    107.900    3.000
 PHR      H171   C17    C18     109.470    3.000
 PHR      H172   C17    C18     109.470    3.000
 PHR      C17    C18    H181    109.470    3.000
 PHR      C17    C18    H182    109.470    3.000
 PHR      C17    C18    C19     111.000    3.000
 PHR      H181   C18    H182    107.900    3.000
 PHR      H181   C18    C19     109.470    3.000
 PHR      H182   C18    C19     109.470    3.000
 PHR      C18    C19    H191    109.470    3.000
 PHR      C18    C19    H192    109.470    3.000
 PHR      C18    C19    C20     111.000    3.000
 PHR      H191   C19    H192    107.900    3.000
 PHR      H191   C19    C20     109.470    3.000
 PHR      H192   C19    C20     109.470    3.000
 PHR      C19    C20    H201    109.470    3.000
 PHR      C19    C20    H202    109.470    3.000
 PHR      C19    C20    O27     109.470    3.000
 PHR      H201   C20    H202    107.900    3.000
 PHR      H201   C20    O27     109.470    3.000
 PHR      H202   C20    O27     109.470    3.000
 PHR      C20    O27    P       120.500    3.000
 PHR      O27    P      O2P     108.200    3.000
 PHR      O27    P      O3P     108.200    3.000
 PHR      O27    P      O1P     108.200    3.000
 PHR      O2P    P      O3P     119.900    3.000
 PHR      O2P    P      O1P     119.900    3.000
 PHR      O3P    P      O1P     119.900    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 PHR      CONST_1  O1     C2     N3     C4       180.000    0.000   0
 PHR      CONST_2  C2     N3     C4     O2       180.000    0.000   0
 PHR      CONST_3  O1     C2     N1     C8       180.000    0.000   0
 PHR      CONST_4  C2     N1     C8     N7       180.000    0.000   0
 PHR      CONST_5  N1     C8     C9     N5       180.000    0.000   0
 PHR      CONST_6  C8     C9     C4     N3         0.000    0.000   0
 PHR      CONST_7  N1     C8     N7     C6       180.000    0.000   0
 PHR      var_1    C8     N7     C10    C11      -90.309   20.000   1
 PHR      var_2    N7     C10    C11    O19       65.027   20.000   3
 PHR      var_3    C10    C11    C12    O21      -54.965   20.000   3
 PHR      var_4    C11    C12    C13    O23      -59.980   20.000   3
 PHR      var_5    C12    C13    C14    O26     -174.992   20.000   3
 PHR      var_6    C13    C14    O26    H26     -179.962   20.000   1
 PHR      var_7    C12    C13    O23    H23      -60.013   20.000   1
 PHR      var_8    C11    C12    O21    H21      -60.005   20.000   1
 PHR      var_9    C10    C11    O19    H19       60.007   20.000   1
 PHR      CONST_8  C8     N7     C6     N5         0.000    0.000   0
 PHR      CONST_9  N7     C6     N5     C15      180.000    0.000   0
 PHR      CONST_10 C6     N5     C9     C8         0.000    0.000   0
 PHR      var_10   C6     N5     C15    C16       89.919   20.000   1
 PHR      var_11   N5     C15    C16    C17      179.985   20.000   3
 PHR      var_12   C15    C16    C17    C18     -179.995   20.000   3
 PHR      var_13   C16    C17    C18    C19     -179.961   20.000   3
 PHR      var_14   C17    C18    C19    C20     -179.966   20.000   3
 PHR      var_15   C18    C19    C20    O27     -179.994   20.000   3
 PHR      var_16   C19    C20    O27    P       -179.998   20.000   1
 PHR      var_17   C20    O27    P      O1P      -65.026   20.000   1
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 PHR      chir_01  C11    C10    O19    C12       negativ
 PHR      chir_02  C12    C11    O21    C13       positiv
 PHR      chir_03  C13    C12    O23    C14       positiv
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 PHR      plan-1    N5        0.020
 PHR      plan-1    C15       0.020
 PHR      plan-1    C9        0.020
 PHR      plan-1    C6        0.020
 PHR      plan-1    N7        0.020
 PHR      plan-1    C4        0.020
 PHR      plan-1    C8        0.020
 PHR      plan-1    N3        0.020
 PHR      plan-1    N1        0.020
 PHR      plan-1    C2        0.020
 PHR      plan-1    O2        0.020
 PHR      plan-1    H3        0.020
 PHR      plan-1    O4        0.020
 PHR      plan-1    C10       0.020
 PHR      plan-1    H1        0.020
 PHR      plan-1    O1        0.020
# ------------------------------------------------------