File: PNU.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (281 lines) | stat: -rw-r--r-- 12,187 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
PNU      PNU '6-CHLORO-2-(1-FURO[2,3-C]PYRIDIN-5-Y' non-polymer        31  20 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_PNU
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 PNU           CL19   CL   CL        0.000      0.000    0.000    0.000
 PNU           C5     C    CR6       0.000     -1.026    0.030   -1.401
 PNU           C4     C    CR16      0.000     -0.477    0.090   -2.667
 PNU           HC4    H    H         0.000      0.597    0.121   -2.805
 PNU           C3     C    CR6       0.000     -1.338    0.111   -3.766
 PNU           N18    N    NH2       0.000     -0.833    0.172   -5.054
 PNU           H182   H    H         0.000      0.170    0.201   -5.214
 PNU           H181   H    H         0.000     -1.458    0.188   -5.854
 PNU           N2     N    NRD6      0.000     -2.651    0.074   -3.558
 PNU           N6     N    NRD6      0.000     -2.345   -0.001   -1.266
 PNU           C1     C    CR6       0.000     -3.138    0.016   -2.327
 PNU           S17    S    S2        0.000     -4.884   -0.031   -2.095
 PNU           C16    C    CH1       0.000     -4.959   -0.102   -0.289
 PNU           H16C   H    H         0.000     -4.437   -1.002    0.065
 PNU           C21    C    CH3       0.000     -4.289    1.141    0.298
 PNU           H213   H    H         0.000     -4.334    1.101    1.355
 PNU           H212   H    H         0.000     -3.276    1.176   -0.010
 PNU           H211   H    H         0.000     -4.792    2.009   -0.044
 PNU           C10    C    CR6       0.000     -6.399   -0.150    0.152
 PNU           N9     N    NRD6      0.000     -6.682   -0.210    1.441
 PNU           C8     C    CR16      0.000     -7.918   -0.251    1.897
 PNU           HC8    H    H         0.000     -8.098   -0.292    2.964
 PNU           C11    C    CR16      0.000     -7.391   -0.136   -0.790
 PNU           H11C   H    H         0.000     -7.150   -0.090   -1.845
 PNU           C12    C    CR56      0.000     -8.719   -0.183   -0.365
 PNU           C13    C    CR15      0.000    -10.027   -0.187   -1.020
 PNU           H13C   H    H         0.000    -10.221   -0.151   -2.085
 PNU           C15    C    CR15      0.000    -10.938   -0.244   -0.038
 PNU           H15C   H    H         0.000    -12.011   -0.262   -0.187
 PNU           O14    O    O2        0.000    -10.327   -0.277    1.159
 PNU           C7     C    CR56      0.000     -8.990   -0.242    1.016
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 PNU      CL19   n/a    C5     START
 PNU      C5     CL19   N6     .
 PNU      C4     C5     C3     .
 PNU      HC4    C4     .      .
 PNU      C3     C4     N2     .
 PNU      N18    C3     H181   .
 PNU      H182   N18    .      .
 PNU      H181   N18    .      .
 PNU      N2     C3     .      .
 PNU      N6     C5     C1     .
 PNU      C1     N6     S17    .
 PNU      S17    C1     C16    .
 PNU      C16    S17    C10    .
 PNU      H16C   C16    .      .
 PNU      C21    C16    H211   .
 PNU      H213   C21    .      .
 PNU      H212   C21    .      .
 PNU      H211   C21    .      .
 PNU      C10    C16    C11    .
 PNU      N9     C10    C8     .
 PNU      C8     N9     HC8    .
 PNU      HC8    C8     .      .
 PNU      C11    C10    C12    .
 PNU      H11C   C11    .      .
 PNU      C12    C11    C13    .
 PNU      C13    C12    C15    .
 PNU      H13C   C13    .      .
 PNU      C15    C13    O14    .
 PNU      H15C   C15    .      .
 PNU      O14    C15    C7     .
 PNU      C7     O14    .      END
 PNU      C1     N2     .    ADD
 PNU      C7     C8     .    ADD
 PNU      C7     C12    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 PNU      C1     N2        double      1.350    0.020
 PNU      C1     N6        single      1.350    0.020
 PNU      S17    C1        single      1.695    0.020
 PNU      N2     C3        single      1.350    0.020
 PNU      C3     C4        double      1.390    0.020
 PNU      N18    C3        single      1.355    0.020
 PNU      C4     C5        single      1.390    0.020
 PNU      HC4    C4        single      1.083    0.020
 PNU      N6     C5        double      1.350    0.020
 PNU      C5     CL19      single      1.795    0.020
 PNU      C7     C8        double      1.390    0.020
 PNU      C7     C12       single      1.490    0.020
 PNU      C7     O14       single      1.329    0.020
 PNU      C8     N9        single      1.337    0.020
 PNU      HC8    C8        single      1.083    0.020
 PNU      N9     C10       double      1.350    0.020
 PNU      C11    C10       single      1.390    0.020
 PNU      C10    C16       single      1.480    0.020
 PNU      C12    C11       double      1.390    0.020
 PNU      H11C   C11       single      1.083    0.020
 PNU      C13    C12       single      1.440    0.020
 PNU      C15    C13       double      1.380    0.020
 PNU      H13C   C13       single      1.083    0.020
 PNU      O14    C15       single      1.380    0.020
 PNU      H15C   C15       single      1.083    0.020
 PNU      C16    S17       single      1.765    0.020
 PNU      C21    C16       single      1.524    0.020
 PNU      H16C   C16       single      1.099    0.020
 PNU      H181   N18       single      1.010    0.020
 PNU      H182   N18       single      1.010    0.020
 PNU      H211   C21       single      1.059    0.020
 PNU      H212   C21       single      1.059    0.020
 PNU      H213   C21       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 PNU      CL19   C5     C4      120.000    3.000
 PNU      CL19   C5     N6      120.000    3.000
 PNU      C4     C5     N6      120.000    3.000
 PNU      C5     C4     HC4     120.000    3.000
 PNU      C5     C4     C3      120.000    3.000
 PNU      HC4    C4     C3      120.000    3.000
 PNU      C4     C3     N18     120.000    3.000
 PNU      C4     C3     N2      120.000    3.000
 PNU      N18    C3     N2      120.000    3.000
 PNU      C3     N18    H182    120.000    3.000
 PNU      C3     N18    H181    120.000    3.000
 PNU      H182   N18    H181    120.000    3.000
 PNU      C3     N2     C1      120.000    3.000
 PNU      C5     N6     C1      120.000    3.000
 PNU      N6     C1     S17     120.000    3.000
 PNU      N6     C1     N2      120.000    3.000
 PNU      S17    C1     N2      120.000    3.000
 PNU      C1     S17    C16      99.998    3.000
 PNU      S17    C16    H16C    109.500    3.000
 PNU      S17    C16    C21     109.500    3.000
 PNU      S17    C16    C10     109.500    3.000
 PNU      H16C   C16    C21     108.340    3.000
 PNU      H16C   C16    C10     109.470    3.000
 PNU      C21    C16    C10     109.470    3.000
 PNU      C16    C21    H213    109.470    3.000
 PNU      C16    C21    H212    109.470    3.000
 PNU      C16    C21    H211    109.470    3.000
 PNU      H213   C21    H212    109.470    3.000
 PNU      H213   C21    H211    109.470    3.000
 PNU      H212   C21    H211    109.470    3.000
 PNU      C16    C10    N9      120.000    3.000
 PNU      C16    C10    C11     120.000    3.000
 PNU      N9     C10    C11     120.000    3.000
 PNU      C10    N9     C8      120.000    3.000
 PNU      N9     C8     HC8     120.000    3.000
 PNU      N9     C8     C7      120.000    3.000
 PNU      HC8    C8     C7      120.000    3.000
 PNU      C10    C11    H11C    120.000    3.000
 PNU      C10    C11    C12     120.000    3.000
 PNU      H11C   C11    C12     120.000    3.000
 PNU      C11    C12    C13     126.000    3.000
 PNU      C11    C12    C7      120.000    3.000
 PNU      C13    C12    C7      120.000    3.000
 PNU      C12    C13    H13C    108.000    3.000
 PNU      C12    C13    C15     108.000    3.000
 PNU      H13C   C13    C15     126.000    3.000
 PNU      C13    C15    H15C    126.000    3.000
 PNU      C13    C15    O14     108.000    3.000
 PNU      H15C   C15    O14     126.000    3.000
 PNU      C15    O14    C7      120.000    3.000
 PNU      O14    C7     C8      120.000    3.000
 PNU      O14    C7     C12     120.000    3.000
 PNU      C8     C7     C12     120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 PNU      CONST_1  CL19   C5     C4     C3       180.000    0.000   0
 PNU      CONST_2  C5     C4     C3     N2         0.000    0.000   0
 PNU      CONST_3  C4     C3     N18    H181    -179.954    0.000   0
 PNU      CONST_4  C4     C3     N2     C1         0.000    0.000   0
 PNU      CONST_5  CL19   C5     N6     C1       180.000    0.000   0
 PNU      CONST_6  C5     N6     C1     S17      180.000    0.000   0
 PNU      CONST_7  N6     C1     N2     C3         0.000    0.000   0
 PNU      var_1    N6     C1     S17    C16       -0.293   20.000   1
 PNU      var_2    C1     S17    C16    C10     -179.999   20.000   1
 PNU      var_3    S17    C16    C21    H211      59.894   20.000   3
 PNU      var_4    S17    C16    C10    C11       -0.003   20.000   1
 PNU      CONST_8  C16    C10    N9     C8       180.000    0.000   0
 PNU      CONST_9  C10    N9     C8     C7         0.000    0.000   0
 PNU      CONST_10 C16    C10    C11    C12      180.000    0.000   0
 PNU      CONST_11 C10    C11    C12    C13      180.000    0.000   0
 PNU      CONST_12 C11    C12    C13    C15      180.000    0.000   0
 PNU      CONST_13 C12    C13    C15    O14        0.000    0.000   0
 PNU      CONST_14 C13    C15    O14    C7         0.000    0.000   0
 PNU      CONST_15 C15    O14    C7     C8       180.000    0.000   0
 PNU      CONST_16 O14    C7     C8     N9       180.000    0.000   0
 PNU      CONST_17 O14    C7     C12    C11      180.000    0.000   0
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 PNU      chir_01  C16    C10    S17    C21       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 PNU      plan-1    C1        0.020
 PNU      plan-1    N2        0.020
 PNU      plan-1    N6        0.020
 PNU      plan-1    S17       0.020
 PNU      plan-1    C3        0.020
 PNU      plan-1    C4        0.020
 PNU      plan-1    C5        0.020
 PNU      plan-1    N18       0.020
 PNU      plan-1    HC4       0.020
 PNU      plan-1    CL19      0.020
 PNU      plan-1    H182      0.020
 PNU      plan-1    H181      0.020
 PNU      plan-2    C7        0.020
 PNU      plan-2    C8        0.020
 PNU      plan-2    C12       0.020
 PNU      plan-2    O14       0.020
 PNU      plan-2    C13       0.020
 PNU      plan-2    C15       0.020
 PNU      plan-2    N9        0.020
 PNU      plan-2    HC8       0.020
 PNU      plan-2    C10       0.020
 PNU      plan-2    C11       0.020
 PNU      plan-2    C16       0.020
 PNU      plan-2    H11C      0.020
 PNU      plan-2    H13C      0.020
 PNU      plan-2    H15C      0.020
 PNU      plan-3    N18       0.020
 PNU      plan-3    C3        0.020
 PNU      plan-3    H181      0.020
 PNU      plan-3    H182      0.020
# ------------------------------------------------------