File: PRZ.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (225 lines) | stat: -rw-r--r-- 9,476 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
PRZ      PRZ '2-ISOBUTYL-3-METHOXYPYRAZINE        ' non-polymer        26  12 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_PRZ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 PRZ           C31    C    CH3       0.000      0.000    0.000    0.000
 PRZ           H313   H    H         0.000      0.846   -0.060   -0.634
 PRZ           H312   H    H         0.000     -0.090    0.987    0.375
 PRZ           H311   H    H         0.000      0.117   -0.675    0.808
 PRZ           O31    O    O2        0.000     -1.175   -0.339   -0.739
 PRZ           C3     C    CR6       0.000     -2.219   -0.245    0.121
 PRZ           N4     N    NRD6      0.000     -2.012    0.109    1.382
 PRZ           C5     C    CR16      0.000     -3.032    0.199    2.217
 PRZ           H5     H    H         0.000     -2.863    0.488    3.247
 PRZ           C6     C    CR16      0.000     -4.314   -0.073    1.778
 PRZ           H6     H    H         0.000     -5.148    0.004    2.465
 PRZ           N1     N    NRD6      0.000     -4.524   -0.428    0.522
 PRZ           C2     C    CR6       0.000     -3.510   -0.515   -0.318
 PRZ           C21    C    CH2       0.000     -3.751   -0.919   -1.750
 PRZ           H212   H    H         0.000     -4.618   -1.581   -1.799
 PRZ           H211   H    H         0.000     -2.872   -1.442   -2.133
 PRZ           C22    C    CH1       0.000     -4.012    0.329   -2.594
 PRZ           H22    H    H         0.000     -3.139    0.995   -2.542
 PRZ           C24    C    CH3       0.000     -5.243    1.060   -2.057
 PRZ           H241   H    H         0.000     -5.075    1.345   -1.051
 PRZ           H242   H    H         0.000     -5.424    1.924   -2.642
 PRZ           H243   H    H         0.000     -6.085    0.419   -2.106
 PRZ           C23    C    CH3       0.000     -4.256   -0.080   -4.049
 PRZ           H231   H    H         0.000     -3.403   -0.586   -4.423
 PRZ           H232   H    H         0.000     -5.097   -0.722   -4.101
 PRZ           H233   H    H         0.000     -4.437    0.785   -4.634
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 PRZ      C31    n/a    O31    START
 PRZ      H313   C31    .      .
 PRZ      H312   C31    .      .
 PRZ      H311   C31    .      .
 PRZ      O31    C31    C3     .
 PRZ      C3     O31    C2     .
 PRZ      N4     C3     C5     .
 PRZ      C5     N4     C6     .
 PRZ      H5     C5     .      .
 PRZ      C6     C5     N1     .
 PRZ      H6     C6     .      .
 PRZ      N1     C6     .      .
 PRZ      C2     C3     C21    .
 PRZ      C21    C2     C22    .
 PRZ      H212   C21    .      .
 PRZ      H211   C21    .      .
 PRZ      C22    C21    C23    .
 PRZ      H22    C22    .      .
 PRZ      C24    C22    H243   .
 PRZ      H241   C24    .      .
 PRZ      H242   C24    .      .
 PRZ      H243   C24    .      .
 PRZ      C23    C22    H233   .
 PRZ      H231   C23    .      .
 PRZ      H232   C23    .      .
 PRZ      H233   C23    .      END
 PRZ      N1     C2     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 PRZ      N1     C2        double      1.350    0.020
 PRZ      N1     C6        single      1.337    0.020
 PRZ      C2     C3        single      1.487    0.020
 PRZ      C21    C2        single      1.511    0.020
 PRZ      N4     C3        double      1.350    0.020
 PRZ      C3     O31       single      1.370    0.020
 PRZ      C5     N4        single      1.337    0.020
 PRZ      C6     C5        double      1.390    0.020
 PRZ      H5     C5        single      1.083    0.020
 PRZ      H6     C6        single      1.083    0.020
 PRZ      C22    C21       single      1.524    0.020
 PRZ      H212   C21       single      1.092    0.020
 PRZ      H211   C21       single      1.092    0.020
 PRZ      C23    C22       single      1.524    0.020
 PRZ      C24    C22       single      1.524    0.020
 PRZ      H22    C22       single      1.099    0.020
 PRZ      H233   C23       single      1.059    0.020
 PRZ      H232   C23       single      1.059    0.020
 PRZ      H231   C23       single      1.059    0.020
 PRZ      H243   C24       single      1.059    0.020
 PRZ      H242   C24       single      1.059    0.020
 PRZ      H241   C24       single      1.059    0.020
 PRZ      O31    C31       single      1.426    0.020
 PRZ      H313   C31       single      1.059    0.020
 PRZ      H312   C31       single      1.059    0.020
 PRZ      H311   C31       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 PRZ      H313   C31    H312    109.470    3.000
 PRZ      H313   C31    H311    109.470    3.000
 PRZ      H312   C31    H311    109.470    3.000
 PRZ      H313   C31    O31     109.470    3.000
 PRZ      H312   C31    O31     109.470    3.000
 PRZ      H311   C31    O31     109.470    3.000
 PRZ      C31    O31    C3      120.000    3.000
 PRZ      O31    C3     N4      120.000    3.000
 PRZ      O31    C3     C2      120.000    3.000
 PRZ      N4     C3     C2      120.000    3.000
 PRZ      C3     N4     C5      120.000    3.000
 PRZ      N4     C5     H5      120.000    3.000
 PRZ      N4     C5     C6      120.000    3.000
 PRZ      H5     C5     C6      120.000    3.000
 PRZ      C5     C6     H6      120.000    3.000
 PRZ      C5     C6     N1      120.000    3.000
 PRZ      H6     C6     N1      120.000    3.000
 PRZ      C6     N1     C2      120.000    3.000
 PRZ      C3     C2     C21     120.000    3.000
 PRZ      C3     C2     N1      120.000    3.000
 PRZ      C21    C2     N1      120.000    3.000
 PRZ      C2     C21    H212    109.470    3.000
 PRZ      C2     C21    H211    109.470    3.000
 PRZ      C2     C21    C22     109.470    3.000
 PRZ      H212   C21    H211    107.900    3.000
 PRZ      H212   C21    C22     109.470    3.000
 PRZ      H211   C21    C22     109.470    3.000
 PRZ      C21    C22    H22     108.340    3.000
 PRZ      C21    C22    C24     111.000    3.000
 PRZ      C21    C22    C23     111.000    3.000
 PRZ      H22    C22    C24     108.340    3.000
 PRZ      H22    C22    C23     108.340    3.000
 PRZ      C24    C22    C23     111.000    3.000
 PRZ      C22    C24    H241    109.470    3.000
 PRZ      C22    C24    H242    109.470    3.000
 PRZ      C22    C24    H243    109.470    3.000
 PRZ      H241   C24    H242    109.470    3.000
 PRZ      H241   C24    H243    109.470    3.000
 PRZ      H242   C24    H243    109.470    3.000
 PRZ      C22    C23    H231    109.470    3.000
 PRZ      C22    C23    H232    109.470    3.000
 PRZ      C22    C23    H233    109.470    3.000
 PRZ      H231   C23    H232    109.470    3.000
 PRZ      H231   C23    H233    109.470    3.000
 PRZ      H232   C23    H233    109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 PRZ      var_1    H311   C31    O31    C3        60.004   20.000   1
 PRZ      var_2    C31    O31    C3     C2       179.757   20.000   1
 PRZ      CONST_1  O31    C3     N4     C5       180.000    0.000   0
 PRZ      CONST_2  C3     N4     C5     C6         0.000    0.000   0
 PRZ      CONST_3  N4     C5     C6     N1         0.000    0.000   0
 PRZ      CONST_4  C5     C6     N1     C2         0.000    0.000   0
 PRZ      CONST_5  C6     N1     C2     C3         0.000    0.000   0
 PRZ      CONST_6  O31    C3     C2     C21        0.000    0.000   0
 PRZ      var_3    C3     C2     C21    C22      -90.526   20.000   2
 PRZ      var_4    C2     C21    C22    C23      179.937   20.000   3
 PRZ      var_5    C21    C22    C24    H243     -59.990   20.000   3
 PRZ      var_6    C21    C22    C23    H233     179.994   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 PRZ      chir_01  C22    C21    C23    C24       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 PRZ      plan-1    N1        0.020
 PRZ      plan-1    C2        0.020
 PRZ      plan-1    C6        0.020
 PRZ      plan-1    C3        0.020
 PRZ      plan-1    N4        0.020
 PRZ      plan-1    C5        0.020
 PRZ      plan-1    C21       0.020
 PRZ      plan-1    O31       0.020
 PRZ      plan-1    H5        0.020
 PRZ      plan-1    H6        0.020
# ------------------------------------------------------