File: R56.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (452 lines) | stat: -rw-r--r-- 20,850 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
R56      R56 '"5-OXO-6-PHENYLMETHANESULFONYLAMINO-' non-polymer        59  31 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_R56
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 R56           O40    O    O         0.000      0.000    0.000    0.000
 R56           C39    C    C         0.000     -0.153   -1.170   -0.281
 R56           N41    N    NH1       0.000      0.589   -2.112    0.335
 R56           HN     H    H         0.000      0.463   -3.086    0.101
 R56           C43    C    CH2       0.000      1.577   -1.724    1.344
 R56           H431   H    H         0.000      1.075   -1.204    2.163
 R56           H432   H    H         0.000      2.316   -1.060    0.891
 R56           C46    C    CH2       0.000      2.275   -2.974    1.883
 R56           H461   H    H         0.000      2.776   -3.493    1.062
 R56           H462   H    H         0.000      1.535   -3.638    2.333
 R56           C49    C    CH2       0.000      3.307   -2.568    2.936
 R56           H491   H    H         0.000      2.804   -2.049    3.755
 R56           H492   H    H         0.000      4.046   -1.904    2.484
 R56           N52    N    NH1       0.000      3.975   -3.765    3.453
 R56           HN2    H    H         0.000      3.721   -4.677    3.101
 R56           C54    C    C         0.000      4.949   -3.647    4.417
 R56           N58    N    N         0.000      5.277   -2.472    4.871
 R56           HN8    H    H         0.000      4.847   -1.678    4.540
 R56           N55    N    NH2       0.000      5.575   -4.771    4.901
 R56           HN52   H    H         0.000      5.328   -5.696    4.555
 R56           HN51   H    H         0.000      6.298   -4.698    5.615
 R56           C37    C    CH1       0.000     -1.169   -1.569   -1.319
 R56           H37    H    H         0.000     -1.899   -2.245   -0.852
 R56           N24    N    N         0.000     -1.872   -0.366   -1.772
 R56           C22    C    C         0.000     -3.034    0.090   -1.230
 R56           O23    O    O         0.000     -3.398   -0.350   -0.161
 R56           C34    C    CH2       0.000     -0.444   -2.333   -2.449
 R56           H341   H    H         0.000     -0.896   -3.301   -2.674
 R56           H342   H    H         0.000      0.624   -2.466   -2.263
 R56           S33    S    S2        0.000     -0.683   -1.193   -3.880
 R56           C25    C    CH1       0.000     -1.180    0.291   -2.903
 R56           H25    H    H         0.000     -0.308    0.871   -2.568
 R56           C27    C    CH2       0.000     -2.142    1.134   -3.722
 R56           H271   H    H         0.000     -2.797    0.475   -4.295
 R56           H272   H    H         0.000     -1.571    1.764   -4.407
 R56           C30    C    CH2       0.000     -2.983    2.014   -2.798
 R56           H301   H    H         0.000     -3.610    2.676   -3.400
 R56           H302   H    H         0.000     -2.324    2.614   -2.167
 R56           C20    C    CH1       0.000     -3.869    1.132   -1.919
 R56           H20    H    H         0.000     -4.371    1.755   -1.166
 R56           N18    N    NH1       0.000     -4.876    0.472   -2.753
 R56           HNI    H    H         0.000     -4.588   -0.139   -3.504
 R56           S15    S    ST        0.000     -6.486    0.728   -2.465
 R56           O16    O    OS        0.000     -7.114    0.005   -3.514
 R56           O17    O    OS        0.000     -6.626    0.353   -1.102
 R56           C12    C    CH2       0.000     -6.666    2.519   -2.687
 R56           H121   H    H         0.000     -6.374    2.790   -3.704
 R56           H122   H    H         0.000     -6.024    3.040   -1.974
 R56           C7     C    CR6       0.000     -8.102    2.912   -2.454
 R56           C5     C    CR16      0.000     -8.526    3.260   -1.185
 R56           H5     H    H         0.000     -7.826    3.250   -0.358
 R56           C3     C    CR16      0.000     -9.844    3.621   -0.972
 R56           H3     H    H         0.000    -10.176    3.893    0.023
 R56           C8     C    CR16      0.000     -8.994    2.930   -3.510
 R56           H8     H    H         0.000     -8.660    2.665   -4.505
 R56           C10    C    CR16      0.000    -10.312    3.288   -3.295
 R56           H10    H    H         0.000    -11.012    3.297   -4.121
 R56           C1     C    CR16      0.000    -10.737    3.634   -2.026
 R56           H1     H    H         0.000    -11.769    3.916   -1.859
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 R56      O40    n/a    C39    START
 R56      C39    O40    C37    .
 R56      N41    C39    C43    .
 R56      HN     N41    .      .
 R56      C43    N41    C46    .
 R56      H431   C43    .      .
 R56      H432   C43    .      .
 R56      C46    C43    C49    .
 R56      H461   C46    .      .
 R56      H462   C46    .      .
 R56      C49    C46    N52    .
 R56      H491   C49    .      .
 R56      H492   C49    .      .
 R56      N52    C49    C54    .
 R56      HN2    N52    .      .
 R56      C54    N52    N55    .
 R56      N58    C54    HN8    .
 R56      HN8    N58    .      .
 R56      N55    C54    HN51   .
 R56      HN52   N55    .      .
 R56      HN51   N55    .      .
 R56      C37    C39    C34    .
 R56      H37    C37    .      .
 R56      N24    C37    C22    .
 R56      C22    N24    O23    .
 R56      O23    C22    .      .
 R56      C34    C37    S33    .
 R56      H341   C34    .      .
 R56      H342   C34    .      .
 R56      S33    C34    C25    .
 R56      C25    S33    C27    .
 R56      H25    C25    .      .
 R56      C27    C25    C30    .
 R56      H271   C27    .      .
 R56      H272   C27    .      .
 R56      C30    C27    C20    .
 R56      H301   C30    .      .
 R56      H302   C30    .      .
 R56      C20    C30    N18    .
 R56      H20    C20    .      .
 R56      N18    C20    S15    .
 R56      HNI    N18    .      .
 R56      S15    N18    C12    .
 R56      O16    S15    .      .
 R56      O17    S15    .      .
 R56      C12    S15    C7     .
 R56      H121   C12    .      .
 R56      H122   C12    .      .
 R56      C7     C12    C8     .
 R56      C5     C7     C3     .
 R56      H5     C5     .      .
 R56      C3     C5     H3     .
 R56      H3     C3     .      .
 R56      C8     C7     C10    .
 R56      H8     C8     .      .
 R56      C10    C8     C1     .
 R56      H10    C10    .      .
 R56      C1     C10    H1     .
 R56      H1     C1     .      END
 R56      C1     C3     .    ADD
 R56      C20    C22    .    ADD
 R56      N24    C25    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 R56      C1     C3        double      1.390    0.020
 R56      C1     C10       single      1.390    0.020
 R56      H1     C1        single      1.083    0.020
 R56      C3     C5        single      1.390    0.020
 R56      H3     C3        single      1.083    0.020
 R56      C5     C7        double      1.390    0.020
 R56      H5     C5        single      1.083    0.020
 R56      C8     C7        single      1.390    0.020
 R56      C7     C12       single      1.511    0.020
 R56      C10    C8        double      1.390    0.020
 R56      H8     C8        single      1.083    0.020
 R56      H10    C10       single      1.083    0.020
 R56      C12    S15       single      1.662    0.020
 R56      H121   C12       single      1.092    0.020
 R56      H122   C12       single      1.092    0.020
 R56      O16    S15       double      1.436    0.020
 R56      O17    S15       double      1.436    0.020
 R56      S15    N18       single      1.600    0.020
 R56      N18    C20       single      1.450    0.020
 R56      HNI    N18       single      1.010    0.020
 R56      C20    C22       single      1.500    0.020
 R56      C20    C30       single      1.524    0.020
 R56      H20    C20       single      1.099    0.020
 R56      O23    C22       double      1.220    0.020
 R56      C22    N24       single      1.330    0.020
 R56      N24    C25       single      1.455    0.020
 R56      N24    C37       single      1.455    0.020
 R56      C27    C25       single      1.524    0.020
 R56      C25    S33       single      1.765    0.020
 R56      H25    C25       single      1.099    0.020
 R56      C30    C27       single      1.524    0.020
 R56      H271   C27       single      1.092    0.020
 R56      H272   C27       single      1.092    0.020
 R56      H301   C30       single      1.092    0.020
 R56      H302   C30       single      1.092    0.020
 R56      S33    C34       single      1.762    0.020
 R56      C34    C37       single      1.524    0.020
 R56      H341   C34       single      1.092    0.020
 R56      H342   C34       single      1.092    0.020
 R56      C37    C39       single      1.500    0.020
 R56      H37    C37       single      1.099    0.020
 R56      C39    O40       double      1.220    0.020
 R56      N41    C39       single      1.330    0.020
 R56      C43    N41       single      1.450    0.020
 R56      HN     N41       single      1.010    0.020
 R56      C46    C43       single      1.524    0.020
 R56      H431   C43       single      1.092    0.020
 R56      H432   C43       single      1.092    0.020
 R56      C49    C46       single      1.524    0.020
 R56      H461   C46       single      1.092    0.020
 R56      H462   C46       single      1.092    0.020
 R56      N52    C49       single      1.450    0.020
 R56      H491   C49       single      1.092    0.020
 R56      H492   C49       single      1.092    0.020
 R56      C54    N52       single      1.330    0.020
 R56      HN2    N52       single      1.010    0.020
 R56      N55    C54       single      1.332    0.020
 R56      N58    C54       double      1.260    0.020
 R56      HN51   N55       single      1.010    0.020
 R56      HN52   N55       single      1.010    0.020
 R56      HN8    N58       single      0.954    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 R56      O40    C39    N41     123.000    3.000
 R56      O40    C39    C37     120.500    3.000
 R56      N41    C39    C37     116.500    3.000
 R56      C39    N41    HN      120.000    3.000
 R56      C39    N41    C43     121.500    3.000
 R56      HN     N41    C43     118.500    3.000
 R56      N41    C43    H431    109.470    3.000
 R56      N41    C43    H432    109.470    3.000
 R56      N41    C43    C46     112.000    3.000
 R56      H431   C43    H432    107.900    3.000
 R56      H431   C43    C46     109.470    3.000
 R56      H432   C43    C46     109.470    3.000
 R56      C43    C46    H461    109.470    3.000
 R56      C43    C46    H462    109.470    3.000
 R56      C43    C46    C49     111.000    3.000
 R56      H461   C46    H462    107.900    3.000
 R56      H461   C46    C49     109.470    3.000
 R56      H462   C46    C49     109.470    3.000
 R56      C46    C49    H491    109.470    3.000
 R56      C46    C49    H492    109.470    3.000
 R56      C46    C49    N52     112.000    3.000
 R56      H491   C49    H492    107.900    3.000
 R56      H491   C49    N52     109.470    3.000
 R56      H492   C49    N52     109.470    3.000
 R56      C49    N52    HN2     118.500    3.000
 R56      C49    N52    C54     121.500    3.000
 R56      HN2    N52    C54     120.000    3.000
 R56      N52    C54    N58     120.000    3.000
 R56      N52    C54    N55     120.000    3.000
 R56      N58    C54    N55     120.000    3.000
 R56      C54    N58    HN8     120.000    3.000
 R56      C54    N55    HN52    120.000    3.000
 R56      C54    N55    HN51    120.000    3.000
 R56      HN52   N55    HN51    120.000    3.000
 R56      C39    C37    H37     108.810    3.000
 R56      C39    C37    N24     111.600    3.000
 R56      C39    C37    C34     109.470    3.000
 R56      H37    C37    N24     109.470    3.000
 R56      H37    C37    C34     108.340    3.000
 R56      N24    C37    C34     105.000    3.000
 R56      C37    N24    C22     121.000    3.000
 R56      C37    N24    C25     120.000    3.000
 R56      C22    N24    C25     121.000    3.000
 R56      N24    C22    O23     123.000    3.000
 R56      N24    C22    C20     116.500    3.000
 R56      O23    C22    C20     120.500    3.000
 R56      C37    C34    H341    109.470    3.000
 R56      C37    C34    H342    109.470    3.000
 R56      C37    C34    S33     109.500    3.000
 R56      H341   C34    H342    107.900    3.000
 R56      H341   C34    S33     109.500    3.000
 R56      H342   C34    S33     109.500    3.000
 R56      C34    S33    C25      96.962    3.000
 R56      S33    C25    H25     109.500    3.000
 R56      S33    C25    C27     109.500    3.000
 R56      S33    C25    N24     109.500    3.000
 R56      H25    C25    C27     108.340    3.000
 R56      H25    C25    N24     109.470    3.000
 R56      C27    C25    N24     105.000    3.000
 R56      C25    C27    H271    109.470    3.000
 R56      C25    C27    H272    109.470    3.000
 R56      C25    C27    C30     111.000    3.000
 R56      H271   C27    H272    107.900    3.000
 R56      H271   C27    C30     109.470    3.000
 R56      H272   C27    C30     109.470    3.000
 R56      C27    C30    H301    109.470    3.000
 R56      C27    C30    H302    109.470    3.000
 R56      C27    C30    C20     111.000    3.000
 R56      H301   C30    H302    107.900    3.000
 R56      H301   C30    C20     109.470    3.000
 R56      H302   C30    C20     109.470    3.000
 R56      C30    C20    H20     108.340    3.000
 R56      C30    C20    N18     110.000    3.000
 R56      C30    C20    C22     109.470    3.000
 R56      H20    C20    N18     108.550    3.000
 R56      H20    C20    C22     108.810    3.000
 R56      N18    C20    C22     111.600    3.000
 R56      C20    N18    HNI     118.500    3.000
 R56      C20    N18    S15     120.000    3.000
 R56      HNI    N18    S15     120.000    3.000
 R56      N18    S15    O16     109.500    3.000
 R56      N18    S15    O17     109.500    3.000
 R56      N18    S15    C12     109.500    3.000
 R56      O16    S15    O17     109.500    3.000
 R56      O16    S15    C12     109.500    3.000
 R56      O17    S15    C12     109.500    3.000
 R56      S15    C12    H121    109.500    3.000
 R56      S15    C12    H122    109.500    3.000
 R56      S15    C12    C7      109.500    3.000
 R56      H121   C12    H122    107.900    3.000
 R56      H121   C12    C7      109.470    3.000
 R56      H122   C12    C7      109.470    3.000
 R56      C12    C7     C5      120.000    3.000
 R56      C12    C7     C8      120.000    3.000
 R56      C5     C7     C8      120.000    3.000
 R56      C7     C5     H5      120.000    3.000
 R56      C7     C5     C3      120.000    3.000
 R56      H5     C5     C3      120.000    3.000
 R56      C5     C3     H3      120.000    3.000
 R56      C5     C3     C1      120.000    3.000
 R56      H3     C3     C1      120.000    3.000
 R56      C7     C8     H8      120.000    3.000
 R56      C7     C8     C10     120.000    3.000
 R56      H8     C8     C10     120.000    3.000
 R56      C8     C10    H10     120.000    3.000
 R56      C8     C10    C1      120.000    3.000
 R56      H10    C10    C1      120.000    3.000
 R56      C10    C1     H1      120.000    3.000
 R56      C10    C1     C3      120.000    3.000
 R56      H1     C1     C3      120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 R56      CONST_1  O40    C39    N41    C43        0.000    0.000   0
 R56      var_1    C39    N41    C43    C46      179.995   20.000   3
 R56      var_2    N41    C43    C46    C49     -179.970   20.000   3
 R56      var_3    C43    C46    C49    N52      179.993   20.000   3
 R56      var_4    C46    C49    N52    C54      179.989   20.000   3
 R56      CONST_2  C49    N52    C54    N55      180.000    0.000   0
 R56      CONST_3  N52    C54    N58    HN8        0.000    0.000   0
 R56      CONST_4  N52    C54    N55    HN51     180.000    0.000   0
 R56      var_5    O40    C39    C37    C34      121.457   20.000   3
 R56      var_6    C39    C37    N24    C22      -90.000   20.000   3
 R56      var_7    C37    N24    C25    S33       30.000   20.000   3
 R56      CONST_5  C37    N24    C22    O23        0.000    0.000   0
 R56      var_8    C39    C37    C34    S33     -120.000   20.000   3
 R56      var_9    C37    C34    S33    C25       30.000   20.000   1
 R56      var_10   C34    S33    C25    C27     -150.000   20.000   1
 R56      var_11   S33    C25    C27    C30      150.000   20.000   3
 R56      var_12   C25    C27    C30    C20      -60.000   20.000   3
 R56      var_13   C27    C30    C20    N18      -60.000   20.000   3
 R56      var_14   C30    C20    C22    N24      -30.000   20.000   3
 R56      var_15   C30    C20    N18    S15     -120.031   20.000   3
 R56      var_16   C20    N18    S15    C12       60.075   20.000   1
 R56      var_17   N18    S15    C12    C7      -179.983   20.000   1
 R56      var_18   S15    C12    C7     C8       -90.289   20.000   2
 R56      CONST_6  C12    C7     C5     C3       180.000    0.000   0
 R56      CONST_7  C7     C5     C3     C1         0.000    0.000   0
 R56      CONST_8  C12    C7     C8     C10      180.000    0.000   0
 R56      CONST_9  C7     C8     C10    C1         0.000    0.000   0
 R56      CONST_10 C8     C10    C1     C3         0.000    0.000   0
 R56      CONST_11 C10    C1     C3     C5         0.000    0.000   0
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 R56      chir_01  S15    C12    O16    O17       positiv
 R56      chir_02  C20    N18    C22    C30       negativ
 R56      chir_03  C25    N24    C27    S33       positiv
 R56      chir_04  C37    N24    C34    C39       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 R56      plan-1    C1        0.020
 R56      plan-1    C3        0.020
 R56      plan-1    C10       0.020
 R56      plan-1    H1        0.020
 R56      plan-1    C5        0.020
 R56      plan-1    C7        0.020
 R56      plan-1    C8        0.020
 R56      plan-1    H3        0.020
 R56      plan-1    H5        0.020
 R56      plan-1    C12       0.020
 R56      plan-1    H8        0.020
 R56      plan-1    H10       0.020
 R56      plan-2    N18       0.020
 R56      plan-2    S15       0.020
 R56      plan-2    C20       0.020
 R56      plan-2    HNI       0.020
 R56      plan-3    C22       0.020
 R56      plan-3    C20       0.020
 R56      plan-3    O23       0.020
 R56      plan-3    N24       0.020
 R56      plan-4    N24       0.020
 R56      plan-4    C22       0.020
 R56      plan-4    C25       0.020
 R56      plan-4    C37       0.020
 R56      plan-5    C39       0.020
 R56      plan-5    C37       0.020
 R56      plan-5    O40       0.020
 R56      plan-5    N41       0.020
 R56      plan-5    HN        0.020
 R56      plan-6    N41       0.020
 R56      plan-6    C39       0.020
 R56      plan-6    C43       0.020
 R56      plan-6    HN        0.020
 R56      plan-7    N52       0.020
 R56      plan-7    C49       0.020
 R56      plan-7    C54       0.020
 R56      plan-7    HN2       0.020
 R56      plan-8    C54       0.020
 R56      plan-8    N52       0.020
 R56      plan-8    N55       0.020
 R56      plan-8    N58       0.020
 R56      plan-8    HN8       0.020
 R56      plan-8    HN2       0.020
 R56      plan-8    HN52      0.020
 R56      plan-8    HN51      0.020
 R56      plan-9    N55       0.020
 R56      plan-9    C54       0.020
 R56      plan-9    HN51      0.020
 R56      plan-9    HN52      0.020
# ------------------------------------------------------