File: RAC.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (337 lines) | stat: -rw-r--r-- 15,084 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
RAC      RAC '4-(2-DIMETHYLCARBAMOYL-PHENYLCARBAMO' non-polymer        42  25 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_RAC
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 RAC           O5     O    OC       -0.500      0.000    0.000    0.000
 RAC           C18    C    C         0.000     -0.770    0.882   -0.441
 RAC           O4     O    OC       -0.500     -0.327    2.021   -0.707
 RAC           C15    C    CR6       0.000     -2.201    0.579   -0.648
 RAC           C14    C    CR16      0.000     -2.698   -0.690   -0.352
 RAC           H14C   H    H         0.000     -2.035   -1.457    0.030
 RAC           C13    C    CR16      0.000     -4.035   -0.967   -0.546
 RAC           H13C   H    H         0.000     -4.422   -1.952   -0.317
 RAC           C16    C    CR16      0.000     -3.062    1.563   -1.138
 RAC           H16C   H    H         0.000     -2.683    2.552   -1.365
 RAC           C17    C    CR16      0.000     -4.396    1.271   -1.333
 RAC           H17C   H    H         0.000     -5.064    2.031   -1.721
 RAC           C12    C    CR6       0.000     -4.883    0.013   -1.033
 RAC           C11    C    CH2       0.000     -6.343   -0.297   -1.243
 RAC           H111   H    H         0.000     -6.459   -1.355   -1.486
 RAC           H112   H    H         0.000     -6.728    0.308   -2.067
 RAC           O3     O    O2        0.000     -7.081    0.007   -0.030
 RAC           C10    C    C         0.000     -8.412   -0.192    0.015
 RAC           O2     O    O         0.000     -8.995   -0.626   -0.959
 RAC           N2     N    NH1       0.000     -9.097    0.090    1.141
 RAC           HN2    H    H         0.000     -8.612    0.446    1.952
 RAC           C4     C    CR6       0.000    -10.474   -0.111    1.186
 RAC           C5     C    CR16      0.000    -11.242    0.052    0.040
 RAC           HC5    H    H         0.000    -10.769    0.336   -0.892
 RAC           C6     C    CR16      0.000    -12.607   -0.147    0.087
 RAC           HC6    H    H         0.000    -13.202   -0.013   -0.808
 RAC           C1     C    CR16      0.000    -13.220   -0.517    1.273
 RAC           HC1    H    H         0.000    -14.292   -0.671    1.300
 RAC           C3     C    CR6       0.000    -11.093   -0.491    2.386
 RAC           C2     C    CR16      0.000    -12.475   -0.689    2.419
 RAC           HC2    H    H         0.000    -12.959   -0.979    3.343
 RAC           C7     C    C         0.000    -10.288   -0.675    3.608
 RAC           O1     O    O         0.000     -9.349   -1.446    3.607
 RAC           N1     N    N         0.000    -10.594    0.013    4.726
 RAC           C9     C    CH3       0.000    -11.628    1.049    4.688
 RAC           HC93   H    H         0.000    -12.447    0.755    5.293
 RAC           HC92   H    H         0.000    -11.231    1.961    5.052
 RAC           HC91   H    H         0.000    -11.960    1.184    3.690
 RAC           C8     C    CH3       0.000     -9.891   -0.274    5.979
 RAC           HC83   H    H         0.000    -10.050   -1.286    6.251
 RAC           HC82   H    H         0.000     -8.852   -0.104    5.851
 RAC           HC81   H    H         0.000    -10.258    0.358    6.746
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 RAC      O5     n/a    C18    START
 RAC      C18    O5     C15    .
 RAC      O4     C18    .      .
 RAC      C15    C18    C16    .
 RAC      C14    C15    C13    .
 RAC      H14C   C14    .      .
 RAC      C13    C14    H13C   .
 RAC      H13C   C13    .      .
 RAC      C16    C15    C17    .
 RAC      H16C   C16    .      .
 RAC      C17    C16    C12    .
 RAC      H17C   C17    .      .
 RAC      C12    C17    C11    .
 RAC      C11    C12    O3     .
 RAC      H111   C11    .      .
 RAC      H112   C11    .      .
 RAC      O3     C11    C10    .
 RAC      C10    O3     N2     .
 RAC      O2     C10    .      .
 RAC      N2     C10    C4     .
 RAC      HN2    N2     .      .
 RAC      C4     N2     C3     .
 RAC      C5     C4     C6     .
 RAC      HC5    C5     .      .
 RAC      C6     C5     C1     .
 RAC      HC6    C6     .      .
 RAC      C1     C6     HC1    .
 RAC      HC1    C1     .      .
 RAC      C3     C4     C7     .
 RAC      C2     C3     HC2    .
 RAC      HC2    C2     .      .
 RAC      C7     C3     N1     .
 RAC      O1     C7     .      .
 RAC      N1     C7     C8     .
 RAC      C9     N1     HC91   .
 RAC      HC93   C9     .      .
 RAC      HC92   C9     .      .
 RAC      HC91   C9     .      .
 RAC      C8     N1     HC81   .
 RAC      HC83   C8     .      .
 RAC      HC82   C8     .      .
 RAC      HC81   C8     .      END
 RAC      C1     C2     .    ADD
 RAC      C12    C13    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 RAC      C1     C2        double      1.390    0.020
 RAC      C1     C6        single      1.390    0.020
 RAC      HC1    C1        single      1.083    0.020
 RAC      C2     C3        single      1.390    0.020
 RAC      HC2    C2        single      1.083    0.020
 RAC      C3     C4        double      1.487    0.020
 RAC      C7     C3        single      1.500    0.020
 RAC      C5     C4        single      1.390    0.020
 RAC      C4     N2        single      1.350    0.020
 RAC      C6     C5        double      1.390    0.020
 RAC      HC5    C5        single      1.083    0.020
 RAC      HC6    C6        single      1.083    0.020
 RAC      N1     C7        single      1.330    0.020
 RAC      O1     C7        double      1.220    0.020
 RAC      C8     N1        single      1.455    0.020
 RAC      C9     N1        single      1.455    0.020
 RAC      HC81   C8        single      1.059    0.020
 RAC      HC82   C8        single      1.059    0.020
 RAC      HC83   C8        single      1.059    0.020
 RAC      HC91   C9        single      1.059    0.020
 RAC      HC92   C9        single      1.059    0.020
 RAC      HC93   C9        single      1.059    0.020
 RAC      N2     C10       single      1.330    0.020
 RAC      HN2    N2        single      1.010    0.020
 RAC      O2     C10       double      1.220    0.020
 RAC      C10    O3        single      1.454    0.020
 RAC      O3     C11       single      1.426    0.020
 RAC      C11    C12       single      1.511    0.020
 RAC      H111   C11       single      1.092    0.020
 RAC      H112   C11       single      1.092    0.020
 RAC      C12    C13       double      1.390    0.020
 RAC      C12    C17       single      1.390    0.020
 RAC      C13    C14       single      1.390    0.020
 RAC      H13C   C13       single      1.083    0.020
 RAC      C14    C15       double      1.390    0.020
 RAC      H14C   C14       single      1.083    0.020
 RAC      C16    C15       single      1.390    0.020
 RAC      C15    C18       single      1.500    0.020
 RAC      C17    C16       double      1.390    0.020
 RAC      H16C   C16       single      1.083    0.020
 RAC      H17C   C17       single      1.083    0.020
 RAC      O4     C18       deloc       1.250    0.020
 RAC      C18    O5        deloc       1.250    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 RAC      O5     C18    O4      123.000    3.000
 RAC      O5     C18    C15     120.000    3.000
 RAC      O4     C18    C15     120.000    3.000
 RAC      C18    C15    C14     120.000    3.000
 RAC      C18    C15    C16     120.000    3.000
 RAC      C14    C15    C16     120.000    3.000
 RAC      C15    C14    H14C    120.000    3.000
 RAC      C15    C14    C13     120.000    3.000
 RAC      H14C   C14    C13     120.000    3.000
 RAC      C14    C13    H13C    120.000    3.000
 RAC      C14    C13    C12     120.000    3.000
 RAC      H13C   C13    C12     120.000    3.000
 RAC      C15    C16    H16C    120.000    3.000
 RAC      C15    C16    C17     120.000    3.000
 RAC      H16C   C16    C17     120.000    3.000
 RAC      C16    C17    H17C    120.000    3.000
 RAC      C16    C17    C12     120.000    3.000
 RAC      H17C   C17    C12     120.000    3.000
 RAC      C17    C12    C11     120.000    3.000
 RAC      C17    C12    C13     120.000    3.000
 RAC      C11    C12    C13     120.000    3.000
 RAC      C12    C11    H111    109.470    3.000
 RAC      C12    C11    H112    109.470    3.000
 RAC      C12    C11    O3      109.470    3.000
 RAC      H111   C11    H112    107.900    3.000
 RAC      H111   C11    O3      109.470    3.000
 RAC      H112   C11    O3      109.470    3.000
 RAC      C11    O3     C10     120.000    3.000
 RAC      O3     C10    O2      119.000    3.000
 RAC      O3     C10    N2      118.000    3.000
 RAC      O2     C10    N2      123.000    3.000
 RAC      C10    N2     HN2     120.000    3.000
 RAC      C10    N2     C4      120.000    3.000
 RAC      HN2    N2     C4      120.000    3.000
 RAC      N2     C4     C5      120.000    3.000
 RAC      N2     C4     C3      120.000    3.000
 RAC      C5     C4     C3      120.000    3.000
 RAC      C4     C5     HC5     120.000    3.000
 RAC      C4     C5     C6      120.000    3.000
 RAC      HC5    C5     C6      120.000    3.000
 RAC      C5     C6     HC6     120.000    3.000
 RAC      C5     C6     C1      120.000    3.000
 RAC      HC6    C6     C1      120.000    3.000
 RAC      C6     C1     HC1     120.000    3.000
 RAC      C6     C1     C2      120.000    3.000
 RAC      HC1    C1     C2      120.000    3.000
 RAC      C4     C3     C2      120.000    3.000
 RAC      C4     C3     C7      120.000    3.000
 RAC      C2     C3     C7      120.000    3.000
 RAC      C3     C2     HC2     120.000    3.000
 RAC      C3     C2     C1      120.000    3.000
 RAC      HC2    C2     C1      120.000    3.000
 RAC      C3     C7     O1      120.500    3.000
 RAC      C3     C7     N1      120.000    3.000
 RAC      O1     C7     N1      123.000    3.000
 RAC      C7     N1     C9      127.000    3.000
 RAC      C7     N1     C8      127.000    3.000
 RAC      C9     N1     C8      120.000    3.000
 RAC      N1     C9     HC93    109.470    3.000
 RAC      N1     C9     HC92    109.470    3.000
 RAC      N1     C9     HC91    109.470    3.000
 RAC      HC93   C9     HC92    109.470    3.000
 RAC      HC93   C9     HC91    109.470    3.000
 RAC      HC92   C9     HC91    109.470    3.000
 RAC      N1     C8     HC83    109.470    3.000
 RAC      N1     C8     HC82    109.470    3.000
 RAC      N1     C8     HC81    109.470    3.000
 RAC      HC83   C8     HC82    109.470    3.000
 RAC      HC83   C8     HC81    109.470    3.000
 RAC      HC82   C8     HC81    109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 RAC      var_1    O5     C18    C15    C16      179.922   20.000   1
 RAC      CONST_1  C18    C15    C14    C13      180.000    0.000   0
 RAC      CONST_2  C15    C14    C13    C12        0.000    0.000   0
 RAC      CONST_3  C18    C15    C16    C17      180.000    0.000   0
 RAC      CONST_4  C15    C16    C17    C12        0.000    0.000   0
 RAC      CONST_5  C16    C17    C12    C11      180.000    0.000   0
 RAC      CONST_6  C17    C12    C13    C14        0.000    0.000   0
 RAC      var_2    C17    C12    C11    O3       -90.288   20.000   2
 RAC      var_3    C12    C11    O3     C10      179.955   20.000   1
 RAC      var_4    C11    O3     C10    N2       179.952   20.000   1
 RAC      CONST_7  O3     C10    N2     C4       180.000    0.000   0
 RAC      var_5    C10    N2     C4     C3       147.489   20.000   1
 RAC      CONST_8  N2     C4     C5     C6       180.000    0.000   0
 RAC      CONST_9  C4     C5     C6     C1         0.000    0.000   0
 RAC      CONST_10 C5     C6     C1     C2         0.000    0.000   0
 RAC      CONST_11 C6     C1     C2     C3         0.000    0.000   0
 RAC      CONST_12 N2     C4     C3     C7         0.000    0.000   0
 RAC      CONST_13 C4     C3     C2     C1         0.000    0.000   0
 RAC      var_6    C4     C3     C7     N1       124.134   20.000   1
 RAC      CONST_14 C3     C7     N1     C8       180.000    0.000   0
 RAC      var_7    C7     N1     C9     HC91      -5.384   20.000   1
 RAC      var_8    C7     N1     C8     HC81    -179.995   20.000   1
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 RAC      plan-1    C1        0.020
 RAC      plan-1    C2        0.020
 RAC      plan-1    C6        0.020
 RAC      plan-1    HC1       0.020
 RAC      plan-1    C3        0.020
 RAC      plan-1    C4        0.020
 RAC      plan-1    C5        0.020
 RAC      plan-1    HC2       0.020
 RAC      plan-1    C7        0.020
 RAC      plan-1    N2        0.020
 RAC      plan-1    HC5       0.020
 RAC      plan-1    HC6       0.020
 RAC      plan-1    HN2       0.020
 RAC      plan-2    C7        0.020
 RAC      plan-2    C3        0.020
 RAC      plan-2    N1        0.020
 RAC      plan-2    O1        0.020
 RAC      plan-3    N1        0.020
 RAC      plan-3    C7        0.020
 RAC      plan-3    C8        0.020
 RAC      plan-3    C9        0.020
 RAC      plan-4    N2        0.020
 RAC      plan-4    C4        0.020
 RAC      plan-4    C10       0.020
 RAC      plan-4    HN2       0.020
 RAC      plan-5    C10       0.020
 RAC      plan-5    N2        0.020
 RAC      plan-5    O2        0.020
 RAC      plan-5    O3        0.020
 RAC      plan-5    HN2       0.020
 RAC      plan-6    C12       0.020
 RAC      plan-6    C11       0.020
 RAC      plan-6    C13       0.020
 RAC      plan-6    C17       0.020
 RAC      plan-6    C14       0.020
 RAC      plan-6    C15       0.020
 RAC      plan-6    C16       0.020
 RAC      plan-6    H13C      0.020
 RAC      plan-6    H14C      0.020
 RAC      plan-6    C18       0.020
 RAC      plan-6    H16C      0.020
 RAC      plan-6    H17C      0.020
 RAC      plan-7    C18       0.020
 RAC      plan-7    C15       0.020
 RAC      plan-7    O4        0.020
 RAC      plan-7    O5        0.020
# ------------------------------------------------------