File: SAF.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (232 lines) | stat: -rw-r--r-- 9,814 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
SAF      SAF '3-[(1S)-1-(DIMETHYLAMINO)ETHYL]PHENO' non-polymer        27  12 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_SAF
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 SAF           O4     O    OH1       0.000      0.000    0.000    0.000
 SAF           H4     H    H         0.000      0.331   -0.882    0.219
 SAF           C4     C    CR6       0.000     -1.139    0.242    0.700
 SAF           C5     C    CR16      0.000     -1.074    0.830    1.953
 SAF           H5     H    H         0.000     -0.113    1.097    2.376
 SAF           C6     C    CR16      0.000     -2.233    1.074    2.663
 SAF           H6     H    H         0.000     -2.182    1.534    3.642
 SAF           C3     C    CR16      0.000     -2.371   -0.104    0.162
 SAF           H3     H    H         0.000     -2.425   -0.570   -0.814
 SAF           C40    C    CR6       0.000     -3.529    0.146    0.873
 SAF           C1     C    CR16      0.000     -3.460    0.733    2.123
 SAF           H1     H    H         0.000     -4.368    0.925    2.681
 SAF           C9     C    CH1       0.000     -4.866   -0.225    0.288
 SAF           H9     H    H         0.000     -4.748   -1.096   -0.372
 SAF           C10    C    CH3       0.000     -5.415    0.955   -0.517
 SAF           H103   H    H         0.000     -4.742    1.194   -1.299
 SAF           H102   H    H         0.000     -6.356    0.695   -0.929
 SAF           H101   H    H         0.000     -5.529    1.795    0.118
 SAF           N2     N    NT        0.000     -5.800   -0.554    1.372
 SAF           C8     C    CH3       0.000     -5.295   -1.778    2.007
 SAF           H8C3   H    H         0.000     -5.258   -2.558    1.291
 SAF           H8C2   H    H         0.000     -4.322   -1.602    2.388
 SAF           H8C1   H    H         0.000     -5.939   -2.057    2.799
 SAF           C7     C    CH3       0.000     -7.078   -0.904    0.737
 SAF           H7C3   H    H         0.000     -7.431   -0.079    0.175
 SAF           H7C2   H    H         0.000     -6.938   -1.735    0.095
 SAF           H7C1   H    H         0.000     -7.787   -1.151    1.484
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 SAF      O4     n/a    C4     START
 SAF      H4     O4     .      .
 SAF      C4     O4     C3     .
 SAF      C5     C4     C6     .
 SAF      H5     C5     .      .
 SAF      C6     C5     H6     .
 SAF      H6     C6     .      .
 SAF      C3     C4     C40    .
 SAF      H3     C3     .      .
 SAF      C40    C3     C9     .
 SAF      C1     C40    H1     .
 SAF      H1     C1     .      .
 SAF      C9     C40    N2     .
 SAF      H9     C9     .      .
 SAF      C10    C9     H101   .
 SAF      H103   C10    .      .
 SAF      H102   C10    .      .
 SAF      H101   C10    .      .
 SAF      N2     C9     C7     .
 SAF      C8     N2     H8C1   .
 SAF      H8C3   C8     .      .
 SAF      H8C2   C8     .      .
 SAF      H8C1   C8     .      .
 SAF      C7     N2     H7C1   .
 SAF      H7C3   C7     .      .
 SAF      H7C2   C7     .      .
 SAF      H7C1   C7     .      END
 SAF      C1     C6     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 SAF      C1     C6        double      1.390    0.020
 SAF      C1     C40       single      1.390    0.020
 SAF      H1     C1        single      1.083    0.020
 SAF      C3     C4        single      1.390    0.020
 SAF      C40    C3        double      1.390    0.020
 SAF      H3     C3        single      1.083    0.020
 SAF      C5     C4        double      1.390    0.020
 SAF      C4     O4        single      1.362    0.020
 SAF      C6     C5        single      1.390    0.020
 SAF      H5     C5        single      1.083    0.020
 SAF      H6     C6        single      1.083    0.020
 SAF      H4     O4        single      0.967    0.020
 SAF      C7     N2        single      1.469    0.020
 SAF      C8     N2        single      1.469    0.020
 SAF      N2     C9        single      1.469    0.020
 SAF      H7C1   C7        single      1.059    0.020
 SAF      H7C2   C7        single      1.059    0.020
 SAF      H7C3   C7        single      1.059    0.020
 SAF      H8C1   C8        single      1.059    0.020
 SAF      H8C2   C8        single      1.059    0.020
 SAF      H8C3   C8        single      1.059    0.020
 SAF      C10    C9        single      1.524    0.020
 SAF      C9     C40       single      1.480    0.020
 SAF      H9     C9        single      1.099    0.020
 SAF      H101   C10       single      1.059    0.020
 SAF      H102   C10       single      1.059    0.020
 SAF      H103   C10       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 SAF      H4     O4     C4      109.470    3.000
 SAF      O4     C4     C5      120.000    3.000
 SAF      O4     C4     C3      120.000    3.000
 SAF      C5     C4     C3      120.000    3.000
 SAF      C4     C5     H5      120.000    3.000
 SAF      C4     C5     C6      120.000    3.000
 SAF      H5     C5     C6      120.000    3.000
 SAF      C5     C6     H6      120.000    3.000
 SAF      C5     C6     C1      120.000    3.000
 SAF      H6     C6     C1      120.000    3.000
 SAF      C4     C3     H3      120.000    3.000
 SAF      C4     C3     C40     120.000    3.000
 SAF      H3     C3     C40     120.000    3.000
 SAF      C3     C40    C1      120.000    3.000
 SAF      C3     C40    C9      120.000    3.000
 SAF      C1     C40    C9      120.000    3.000
 SAF      C40    C1     H1      120.000    3.000
 SAF      C40    C1     C6      120.000    3.000
 SAF      H1     C1     C6      120.000    3.000
 SAF      C40    C9     H9      109.470    3.000
 SAF      C40    C9     C10     109.470    3.000
 SAF      C40    C9     N2      109.500    3.000
 SAF      H9     C9     C10     108.340    3.000
 SAF      H9     C9     N2      109.500    3.000
 SAF      C10    C9     N2      109.500    3.000
 SAF      C9     C10    H103    109.470    3.000
 SAF      C9     C10    H102    109.470    3.000
 SAF      C9     C10    H101    109.470    3.000
 SAF      H103   C10    H102    109.470    3.000
 SAF      H103   C10    H101    109.470    3.000
 SAF      H102   C10    H101    109.470    3.000
 SAF      C9     N2     C8      109.470    3.000
 SAF      C9     N2     C7      109.470    3.000
 SAF      C8     N2     C7      109.470    3.000
 SAF      N2     C8     H8C3    109.470    3.000
 SAF      N2     C8     H8C2    109.470    3.000
 SAF      N2     C8     H8C1    109.470    3.000
 SAF      H8C3   C8     H8C2    109.470    3.000
 SAF      H8C3   C8     H8C1    109.470    3.000
 SAF      H8C2   C8     H8C1    109.470    3.000
 SAF      N2     C7     H7C3    109.470    3.000
 SAF      N2     C7     H7C2    109.470    3.000
 SAF      N2     C7     H7C1    109.470    3.000
 SAF      H7C3   C7     H7C2    109.470    3.000
 SAF      H7C3   C7     H7C1    109.470    3.000
 SAF      H7C2   C7     H7C1    109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 SAF      var_1    H4     O4     C4     C3       -89.847   20.000   1
 SAF      CONST_1  O4     C4     C5     C6       180.000    0.000   0
 SAF      CONST_2  C4     C5     C6     C1         0.000    0.000   0
 SAF      CONST_3  O4     C4     C3     C40      180.000    0.000   0
 SAF      CONST_4  C4     C3     C40    C9       180.000    0.000   0
 SAF      CONST_5  C3     C40    C1     C6         0.000    0.000   0
 SAF      CONST_6  C40    C1     C6     C5         0.000    0.000   0
 SAF      var_2    C3     C40    C9     N2       149.804   20.000   1
 SAF      var_3    C40    C9     C10    H101     -60.008   20.000   3
 SAF      var_4    C40    C9     N2     C7       179.962   20.000   1
 SAF      var_5    C9     N2     C8     H8C1    -179.998   20.000   1
 SAF      var_6    C9     N2     C7     H7C1     179.966   20.000   1
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 SAF      chir_01  N2     C7     C8     C9        negativ
 SAF      chir_02  C9     N2     C10    C40       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 SAF      plan-1    C1        0.020
 SAF      plan-1    C6        0.020
 SAF      plan-1    C40       0.020
 SAF      plan-1    H1        0.020
 SAF      plan-1    C3        0.020
 SAF      plan-1    C4        0.020
 SAF      plan-1    C5        0.020
 SAF      plan-1    H3        0.020
 SAF      plan-1    O4        0.020
 SAF      plan-1    H5        0.020
 SAF      plan-1    H6        0.020
 SAF      plan-1    C9        0.020
# ------------------------------------------------------