File: SCB.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (400 lines) | stat: -rw-r--r-- 18,415 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
SCB      SCB '"2-CHLORO-5-(5-{(E)-[(2Z)-3-(2-METHO' non-polymer        51  33 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_SCB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 SCB           O5     O    OC       -0.500      0.000    0.000    0.000
 SCB           C17    C    C         0.000      0.373    0.529   -1.070
 SCB           O4     O    OC       -0.500      1.441    0.164   -1.609
 SCB           C15    C    CR6       0.000     -0.447    1.585   -1.697
 SCB           C14    C    CR6       0.000     -0.033    2.178   -2.893
 SCB           CL1    CL   CL        0.000      1.451    1.673   -3.641
 SCB           C13    C    CR16      0.000     -0.800    3.167   -3.481
 SCB           H13    H    H         0.000     -0.474    3.623   -4.408
 SCB           C12    C    CR16      0.000     -1.980    3.575   -2.893
 SCB           H12    H    H         0.000     -2.576    4.350   -3.358
 SCB           C16    C    CR16      0.000     -1.636    1.995   -1.094
 SCB           H16    H    H         0.000     -1.959    1.545   -0.164
 SCB           C11    C    CR6       0.000     -2.407    2.989   -1.697
 SCB           C10    C    CR5       0.000     -3.670    3.427   -1.069
 SCB           C9     C    CR15      0.000     -4.117    4.716   -0.997
 SCB           H9     H    H         0.000     -3.614    5.594   -1.382
 SCB           C8     C    CR15      0.000     -5.346    4.688   -0.333
 SCB           H8     H    H         0.000     -5.980    5.538   -0.111
 SCB           O3     O    O2        0.000     -4.568    2.623   -0.473
 SCB           C7     C    CR5       0.000     -5.598    3.366   -0.014
 SCB           C6     C    C1        0.000     -6.733    2.878    0.669
 SCB           H6     H    H         0.000     -7.500    3.561    0.995
 SCB           C5     C    CR5       0.000     -6.860    1.542    0.915
 SCB           C4     C    CR5       0.000     -7.942    0.817    1.599
 SCB           O2     O    O         0.000     -8.913    1.400    2.049
 SCB           S1     S    S2        0.000     -5.755    0.202    0.494
 SCB           C18    C    CR5       0.000     -6.707   -1.136    1.195
 SCB           N1     N    NR5       0.000     -7.815   -0.494    1.705
 SCB           C3     C    CH2       0.000     -8.859   -1.273    2.377
 SCB           H31    H    H         0.000     -9.335   -0.657    3.143
 SCB           H32    H    H         0.000     -8.413   -2.153    2.843
 SCB           C2     C    CH2       0.000     -9.906   -1.712    1.351
 SCB           H21A   H    H         0.000    -10.288   -0.836    0.823
 SCB           H22A   H    H         0.000    -10.729   -2.214    1.864
 SCB           O1     O    O2        0.000     -9.308   -2.610    0.414
 SCB           C1     C    CH3       0.000    -10.330   -2.983   -0.512
 SCB           H13A   H    H         0.000    -11.123   -3.456    0.007
 SCB           H12A   H    H         0.000    -10.696   -2.119   -1.002
 SCB           H11    H    H         0.000     -9.930   -3.652   -1.230
 SCB           N2     N    N         0.000     -6.424   -2.419    1.216
 SCB           C19    C    CR6       0.000     -5.266   -2.873    0.645
 SCB           C24    C    CR16      0.000     -4.876   -2.412   -0.614
 SCB           H24    H    H         0.000     -5.492   -1.696   -1.144
 SCB           C23    C    CR16      0.000     -3.706   -2.871   -1.181
 SCB           H23    H    H         0.000     -3.399   -2.509   -2.155
 SCB           C22    C    CR16      0.000     -2.922   -3.792   -0.509
 SCB           H22    H    H         0.000     -2.005   -4.152   -0.961
 SCB           C21    C    CR16      0.000     -3.304   -4.257    0.737
 SCB           H21    H    H         0.000     -2.686   -4.978    1.258
 SCB           C20    C    CR16      0.000     -4.470   -3.804    1.319
 SCB           H20    H    H         0.000     -4.767   -4.169    2.294
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 SCB      O5     n/a    C17    START
 SCB      C17    O5     C15    .
 SCB      O4     C17    .      .
 SCB      C15    C17    C16    .
 SCB      C14    C15    C13    .
 SCB      CL1    C14    .      .
 SCB      C13    C14    C12    .
 SCB      H13    C13    .      .
 SCB      C12    C13    H12    .
 SCB      H12    C12    .      .
 SCB      C16    C15    C11    .
 SCB      H16    C16    .      .
 SCB      C11    C16    C10    .
 SCB      C10    C11    O3     .
 SCB      C9     C10    C8     .
 SCB      H9     C9     .      .
 SCB      C8     C9     H8     .
 SCB      H8     C8     .      .
 SCB      O3     C10    C7     .
 SCB      C7     O3     C6     .
 SCB      C6     C7     C5     .
 SCB      H6     C6     .      .
 SCB      C5     C6     S1     .
 SCB      C4     C5     O2     .
 SCB      O2     C4     .      .
 SCB      S1     C5     C18    .
 SCB      C18    S1     N2     .
 SCB      N1     C18    C3     .
 SCB      C3     N1     C2     .
 SCB      H31    C3     .      .
 SCB      H32    C3     .      .
 SCB      C2     C3     O1     .
 SCB      H21A   C2     .      .
 SCB      H22A   C2     .      .
 SCB      O1     C2     C1     .
 SCB      C1     O1     H11    .
 SCB      H13A   C1     .      .
 SCB      H12A   C1     .      .
 SCB      H11    C1     .      .
 SCB      N2     C18    C19    .
 SCB      C19    N2     C24    .
 SCB      C24    C19    C23    .
 SCB      H24    C24    .      .
 SCB      C23    C24    C22    .
 SCB      H23    C23    .      .
 SCB      C22    C23    C21    .
 SCB      H22    C22    .      .
 SCB      C21    C22    C20    .
 SCB      H21    C21    .      .
 SCB      C20    C21    H20    .
 SCB      H20    C20    .      END
 SCB      N1     C4     .    ADD
 SCB      C7     C8     .    ADD
 SCB      C11    C12    .    ADD
 SCB      C19    C20    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 SCB      C1     O1        single      1.426    0.020
 SCB      H11    C1        single      1.059    0.020
 SCB      H12A   C1        single      1.059    0.020
 SCB      H13A   C1        single      1.059    0.020
 SCB      O1     C2        single      1.426    0.020
 SCB      C2     C3        single      1.524    0.020
 SCB      H21A   C2        single      1.092    0.020
 SCB      H22A   C2        single      1.092    0.020
 SCB      C3     N1        single      1.462    0.020
 SCB      H31    C3        single      1.092    0.020
 SCB      H32    C3        single      1.092    0.020
 SCB      N1     C4        single      1.337    0.020
 SCB      N1     C18       single      1.337    0.020
 SCB      O2     C4        double      1.285    0.020
 SCB      C4     C5        single      1.490    0.020
 SCB      C5     C6        double      1.483    0.020
 SCB      S1     C5        single      1.745    0.020
 SCB      C6     C7        single      1.483    0.020
 SCB      H6     C6        single      1.077    0.020
 SCB      C7     C8        double      1.387    0.020
 SCB      C7     O3        single      1.370    0.020
 SCB      C8     C9        single      1.380    0.020
 SCB      H8     C8        single      1.083    0.020
 SCB      C9     C10       double      1.387    0.020
 SCB      H9     C9        single      1.083    0.020
 SCB      O3     C10       single      1.370    0.020
 SCB      C10    C11       single      1.490    0.020
 SCB      C11    C12       double      1.390    0.020
 SCB      C11    C16       single      1.390    0.020
 SCB      C12    C13       single      1.390    0.020
 SCB      H12    C12       single      1.083    0.020
 SCB      C13    C14       double      1.390    0.020
 SCB      H13    C13       single      1.083    0.020
 SCB      CL1    C14       single      1.795    0.020
 SCB      C14    C15       single      1.487    0.020
 SCB      C16    C15       double      1.390    0.020
 SCB      C15    C17       single      1.500    0.020
 SCB      H16    C16       single      1.083    0.020
 SCB      O4     C17       deloc       1.250    0.020
 SCB      C17    O5        deloc       1.250    0.020
 SCB      C18    S1        single      1.745    0.020
 SCB      N2     C18       double      1.365    0.020
 SCB      C19    N2        single      1.400    0.020
 SCB      C19    C20       double      1.390    0.020
 SCB      C24    C19       single      1.390    0.020
 SCB      C20    C21       single      1.390    0.020
 SCB      H20    C20       single      1.083    0.020
 SCB      C21    C22       double      1.390    0.020
 SCB      H21    C21       single      1.083    0.020
 SCB      C22    C23       single      1.390    0.020
 SCB      H22    C22       single      1.083    0.020
 SCB      C23    C24       double      1.390    0.020
 SCB      H23    C23       single      1.083    0.020
 SCB      H24    C24       single      1.083    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 SCB      O5     C17    O4      123.000    3.000
 SCB      O5     C17    C15     120.000    3.000
 SCB      O4     C17    C15     120.000    3.000
 SCB      C17    C15    C14     120.000    3.000
 SCB      C17    C15    C16     120.000    3.000
 SCB      C14    C15    C16     120.000    3.000
 SCB      C15    C14    CL1     120.000    3.000
 SCB      C15    C14    C13     120.000    3.000
 SCB      CL1    C14    C13     120.000    3.000
 SCB      C14    C13    H13     120.000    3.000
 SCB      C14    C13    C12     120.000    3.000
 SCB      H13    C13    C12     120.000    3.000
 SCB      C13    C12    H12     120.000    3.000
 SCB      C13    C12    C11     120.000    3.000
 SCB      H12    C12    C11     120.000    3.000
 SCB      C15    C16    H16     120.000    3.000
 SCB      C15    C16    C11     120.000    3.000
 SCB      H16    C16    C11     120.000    3.000
 SCB      C16    C11    C10     120.000    3.000
 SCB      C16    C11    C12     120.000    3.000
 SCB      C10    C11    C12     120.000    3.000
 SCB      C11    C10    C9      126.000    3.000
 SCB      C11    C10    O3      126.000    3.000
 SCB      C9     C10    O3      108.000    3.000
 SCB      C10    C9     H9      126.000    3.000
 SCB      C10    C9     C8      108.000    3.000
 SCB      H9     C9     C8      126.000    3.000
 SCB      C9     C8     H8      126.000    3.000
 SCB      C9     C8     C7      108.000    3.000
 SCB      H8     C8     C7      126.000    3.000
 SCB      C10    O3     C7      108.000    3.000
 SCB      O3     C7     C6      108.000    3.000
 SCB      O3     C7     C8      108.000    3.000
 SCB      C6     C7     C8      108.000    3.000
 SCB      C7     C6     H6      120.000    3.000
 SCB      C7     C6     C5      120.000    3.000
 SCB      H6     C6     C5      120.000    3.000
 SCB      C6     C5     C4      117.000    3.000
 SCB      C6     C5     S1      108.000    3.000
 SCB      C4     C5     S1      108.000    3.000
 SCB      C5     C4     O2      108.000    3.000
 SCB      C5     C4     N1      108.000    3.000
 SCB      O2     C4     N1      108.000    3.000
 SCB      C5     S1     C18      98.008    3.000
 SCB      S1     C18    N1      108.000    3.000
 SCB      S1     C18    N2      108.000    3.000
 SCB      N1     C18    N2      108.000    3.000
 SCB      C18    N1     C3      126.000    3.000
 SCB      C18    N1     C4      108.000    3.000
 SCB      C3     N1     C4      126.000    3.000
 SCB      N1     C3     H31     109.500    3.000
 SCB      N1     C3     H32     109.500    3.000
 SCB      N1     C3     C2      109.500    3.000
 SCB      H31    C3     H32     107.900    3.000
 SCB      H31    C3     C2      109.470    3.000
 SCB      H32    C3     C2      109.470    3.000
 SCB      C3     C2     H21A    109.470    3.000
 SCB      C3     C2     H22A    109.470    3.000
 SCB      C3     C2     O1      109.470    3.000
 SCB      H21A   C2     H22A    107.900    3.000
 SCB      H21A   C2     O1      109.470    3.000
 SCB      H22A   C2     O1      109.470    3.000
 SCB      C2     O1     C1      111.800    3.000
 SCB      O1     C1     H13A    109.470    3.000
 SCB      O1     C1     H12A    109.470    3.000
 SCB      O1     C1     H11     109.470    3.000
 SCB      H13A   C1     H12A    109.470    3.000
 SCB      H13A   C1     H11     109.470    3.000
 SCB      H12A   C1     H11     109.470    3.000
 SCB      C18    N2     C19     120.000    3.000
 SCB      N2     C19    C24     120.000    3.000
 SCB      N2     C19    C20     120.000    3.000
 SCB      C24    C19    C20     120.000    3.000
 SCB      C19    C24    H24     120.000    3.000
 SCB      C19    C24    C23     120.000    3.000
 SCB      H24    C24    C23     120.000    3.000
 SCB      C24    C23    H23     120.000    3.000
 SCB      C24    C23    C22     120.000    3.000
 SCB      H23    C23    C22     120.000    3.000
 SCB      C23    C22    H22     120.000    3.000
 SCB      C23    C22    C21     120.000    3.000
 SCB      H22    C22    C21     120.000    3.000
 SCB      C22    C21    H21     120.000    3.000
 SCB      C22    C21    C20     120.000    3.000
 SCB      H21    C21    C20     120.000    3.000
 SCB      C21    C20    H20     120.000    3.000
 SCB      C21    C20    C19     120.000    3.000
 SCB      H20    C20    C19     120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 SCB      var_1    O5     C17    C15    C16        0.201   20.000   1
 SCB      CONST_1  C17    C15    C14    C13      180.000    0.000   0
 SCB      CONST_2  C15    C14    C13    C12        0.000    0.000   0
 SCB      CONST_3  C14    C13    C12    C11        0.000    0.000   0
 SCB      CONST_4  C17    C15    C16    C11      180.000    0.000   0
 SCB      CONST_5  C15    C16    C11    C10      180.000    0.000   0
 SCB      CONST_6  C16    C11    C12    C13        0.000    0.000   0
 SCB      var_2    C16    C11    C10    O3       -39.985   20.000   1
 SCB      CONST_7  C11    C10    C9     C8       180.000    0.000   0
 SCB      CONST_8  C10    C9     C8     C7         0.000    0.000   0
 SCB      CONST_9  C11    C10    O3     C7       180.000    0.000   0
 SCB      CONST_10 C10    O3     C7     C6       180.000    0.000   0
 SCB      CONST_11 O3     C7     C8     C9         0.000    0.000   0
 SCB      var_3    O3     C7     C6     C5        -0.049   20.000   1
 SCB      CONST_12 C7     C6     C5     S1         0.050    0.000   0
 SCB      CONST_13 C6     C5     C4     O2         0.000    0.000   0
 SCB      CONST_14 C6     C5     S1     C18      180.000    0.000   0
 SCB      CONST_15 C5     S1     C18    N2       180.000    0.000   0
 SCB      CONST_16 S1     C18    N1     C3       180.000    0.000   0
 SCB      CONST_17 C18    N1     C4     C5         0.000    0.000   0
 SCB      var_4    C18    N1     C3     C2       -90.223   20.000   1
 SCB      var_5    N1     C3     C2     O1        64.990   20.000   3
 SCB      var_6    C3     C2     O1     C1       179.971   20.000   1
 SCB      var_7    C2     O1     C1     H11      179.976   20.000   1
 SCB      CONST_18 S1     C18    N2     C19       -0.071    0.000   0
 SCB      var_8    C18    N2     C19    C24      -45.211   20.000   1
 SCB      CONST_19 N2     C19    C20    C21      180.000    0.000   0
 SCB      CONST_20 N2     C19    C24    C23      180.000    0.000   0
 SCB      CONST_21 C19    C24    C23    C22        0.000    0.000   0
 SCB      CONST_22 C24    C23    C22    C21        0.000    0.000   0
 SCB      CONST_23 C23    C22    C21    C20        0.000    0.000   0
 SCB      CONST_24 C22    C21    C20    C19        0.000    0.000   0
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 SCB      plan-1    N1        0.020
 SCB      plan-1    C3        0.020
 SCB      plan-1    C4        0.020
 SCB      plan-1    C18       0.020
 SCB      plan-1    C5        0.020
 SCB      plan-1    S1        0.020
 SCB      plan-1    O2        0.020
 SCB      plan-1    C6        0.020
 SCB      plan-1    C7        0.020
 SCB      plan-1    H6        0.020
 SCB      plan-1    N2        0.020
 SCB      plan-1    C19       0.020
 SCB      plan-2    C7        0.020
 SCB      plan-2    C6        0.020
 SCB      plan-2    C8        0.020
 SCB      plan-2    O3        0.020
 SCB      plan-2    C9        0.020
 SCB      plan-2    C10       0.020
 SCB      plan-2    H8        0.020
 SCB      plan-2    H9        0.020
 SCB      plan-2    C11       0.020
 SCB      plan-2    H6        0.020
 SCB      plan-3    C11       0.020
 SCB      plan-3    C10       0.020
 SCB      plan-3    C12       0.020
 SCB      plan-3    C16       0.020
 SCB      plan-3    C13       0.020
 SCB      plan-3    C14       0.020
 SCB      plan-3    C15       0.020
 SCB      plan-3    H12       0.020
 SCB      plan-3    H13       0.020
 SCB      plan-3    CL1       0.020
 SCB      plan-3    C17       0.020
 SCB      plan-3    H16       0.020
 SCB      plan-4    C17       0.020
 SCB      plan-4    C15       0.020
 SCB      plan-4    O4        0.020
 SCB      plan-4    O5        0.020
 SCB      plan-5    C19       0.020
 SCB      plan-5    N2        0.020
 SCB      plan-5    C20       0.020
 SCB      plan-5    C24       0.020
 SCB      plan-5    C21       0.020
 SCB      plan-5    C22       0.020
 SCB      plan-5    C23       0.020
 SCB      plan-5    H20       0.020
 SCB      plan-5    H21       0.020
 SCB      plan-5    H22       0.020
 SCB      plan-5    H23       0.020
 SCB      plan-5    H24       0.020
# ------------------------------------------------------