File: SMS.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (300 lines) | stat: -rw-r--r-- 13,561 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
SMS      SMS '"SULFAMIC ACID 2,3-O-(1-METHYLETHYLI' non-polymer        37  22 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_SMS
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 SMS           O6     O    OS        0.000      0.000    0.000    0.000
 SMS           S1     S    ST        0.000     -1.391   -0.213   -0.201
 SMS           O7     O    OS        0.000     -2.180   -1.210    0.433
 SMS           O5     O    O2        0.000     -2.073    1.125    0.110
 SMS           C5     C    CH1       0.000     -2.574    1.628   -1.165
 SMS           HC5    H    H         0.000     -1.826    2.291   -1.623
 SMS           O4     O    O2        0.000     -1.571   -0.428   -1.711
 SMS           C4     C    CH1       0.000     -2.747    0.366   -2.028
 SMS           HC4    H    H         0.000     -2.796    0.610   -3.098
 SMS           C3     C    CH1       0.000     -3.967   -0.445   -1.578
 SMS           HC3    H    H         0.000     -3.723   -1.146   -0.767
 SMS           O2     O    O2        0.000     -4.457   -1.128   -2.764
 SMS           C7     C    CT        0.000     -5.455   -0.280   -3.349
 SMS           C9     C    CH3       0.000     -5.010    0.145   -4.750
 SMS           HC93   H    H         0.000     -5.739    0.786   -5.174
 SMS           HC92   H    H         0.000     -4.085    0.656   -4.688
 SMS           HC91   H    H         0.000     -4.898   -0.713   -5.362
 SMS           C8     C    CH3       0.000     -6.782   -1.036   -3.440
 SMS           HC83   H    H         0.000     -6.751   -1.711   -4.255
 SMS           HC82   H    H         0.000     -6.945   -1.575   -2.542
 SMS           HC81   H    H         0.000     -7.574   -0.346   -3.584
 SMS           O1     O    O2        0.000     -5.615    0.885   -2.516
 SMS           C2     C    CT        0.000     -5.161    0.454   -1.226
 SMS           O3     O    O2        0.000     -4.844    1.523   -0.373
 SMS           C6     C    CH2       0.000     -3.888    2.372   -0.997
 SMS           HC62   H    H         0.000     -3.731    3.256   -0.376
 SMS           HC61   H    H         0.000     -4.262    2.678   -1.977
 SMS           C1     C    CH2       0.000     -6.264   -0.387   -0.583
 SMS           HC11   H    H         0.000     -5.961   -0.672    0.426
 SMS           HC12   H    H         0.000     -6.429   -1.286   -1.180
 SMS           O8     O    O2        0.000     -7.472    0.374   -0.522
 SMS           S2     S    ST        0.000     -8.522   -0.516    0.126
 SMS           O10    O    OS        0.000     -9.778    0.003   -0.290
 SMS           O9     O    OS        0.000     -8.077   -1.850   -0.079
 SMS           N1     N    NH2       0.000     -8.448   -0.262    1.760
 SMS           HN12   H    H         0.000     -7.780    0.397    2.157
 SMS           HN11   H    H         0.000     -9.070   -0.761    2.395
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 SMS      O6     n/a    S1     START
 SMS      S1     O6     O4     .
 SMS      O7     S1     .      .
 SMS      O5     S1     C5     .
 SMS      C5     O5     HC5    .
 SMS      HC5    C5     .      .
 SMS      O4     S1     C4     .
 SMS      C4     O4     C3     .
 SMS      HC4    C4     .      .
 SMS      C3     C4     O2     .
 SMS      HC3    C3     .      .
 SMS      O2     C3     C7     .
 SMS      C7     O2     O1     .
 SMS      C9     C7     HC91   .
 SMS      HC93   C9     .      .
 SMS      HC92   C9     .      .
 SMS      HC91   C9     .      .
 SMS      C8     C7     HC81   .
 SMS      HC83   C8     .      .
 SMS      HC82   C8     .      .
 SMS      HC81   C8     .      .
 SMS      O1     C7     C2     .
 SMS      C2     O1     C1     .
 SMS      O3     C2     C6     .
 SMS      C6     O3     HC61   .
 SMS      HC62   C6     .      .
 SMS      HC61   C6     .      .
 SMS      C1     C2     O8     .
 SMS      HC11   C1     .      .
 SMS      HC12   C1     .      .
 SMS      O8     C1     S2     .
 SMS      S2     O8     N1     .
 SMS      O10    S2     .      .
 SMS      O9     S2     .      .
 SMS      N1     S2     HN11   .
 SMS      HN12   N1     .      .
 SMS      HN11   N1     .      END
 SMS      C2     C3     .    ADD
 SMS      C4     C5     .    ADD
 SMS      C5     C6     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 SMS      N1     S2        single      1.600    0.020
 SMS      O10    S2        double      1.436    0.020
 SMS      O9     S2        double      1.436    0.020
 SMS      S2     O8        single      1.535    0.020
 SMS      HN11   N1        single      1.010    0.020
 SMS      HN12   N1        single      1.010    0.020
 SMS      O8     C1        single      1.426    0.020
 SMS      C1     C2        single      1.524    0.020
 SMS      HC11   C1        single      1.092    0.020
 SMS      HC12   C1        single      1.092    0.020
 SMS      C2     C3        single      1.524    0.020
 SMS      O3     C2        single      1.426    0.020
 SMS      C2     O1        single      1.426    0.020
 SMS      C3     C4        single      1.524    0.020
 SMS      O2     C3        single      1.426    0.020
 SMS      HC3    C3        single      1.099    0.020
 SMS      C4     C5        single      1.524    0.020
 SMS      C4     O4        single      1.426    0.020
 SMS      HC4    C4        single      1.099    0.020
 SMS      C5     C6        single      1.524    0.020
 SMS      C5     O5        single      1.426    0.020
 SMS      HC5    C5        single      1.099    0.020
 SMS      C6     O3        single      1.426    0.020
 SMS      HC61   C6        single      1.092    0.020
 SMS      HC62   C6        single      1.092    0.020
 SMS      O5     S1        single      1.535    0.020
 SMS      O7     S1        double      1.436    0.020
 SMS      S1     O6        double      1.436    0.020
 SMS      O4     S1        single      1.535    0.020
 SMS      C7     O2        single      1.426    0.020
 SMS      C9     C7        single      1.524    0.020
 SMS      C8     C7        single      1.524    0.020
 SMS      O1     C7        single      1.426    0.020
 SMS      HC91   C9        single      1.059    0.020
 SMS      HC92   C9        single      1.059    0.020
 SMS      HC93   C9        single      1.059    0.020
 SMS      HC81   C8        single      1.059    0.020
 SMS      HC82   C8        single      1.059    0.020
 SMS      HC83   C8        single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 SMS      O6     S1     O7      109.500    3.000
 SMS      O6     S1     O5      109.500    3.000
 SMS      O6     S1     O4      109.500    3.000
 SMS      O7     S1     O5      109.500    3.000
 SMS      O7     S1     O4      109.500    3.000
 SMS      O5     S1     O4      109.500    3.000
 SMS      S1     O5     C5      120.000    3.000
 SMS      O5     C5     HC5     109.470    3.000
 SMS      O5     C5     C4      109.470    3.000
 SMS      O5     C5     C6      109.470    3.000
 SMS      C4     C5     C6      111.000    3.000
 SMS      HC5    C5     C4      108.340    3.000
 SMS      HC5    C5     C6      108.340    3.000
 SMS      S1     O4     C4      120.000    3.000
 SMS      O4     C4     HC4     109.470    3.000
 SMS      O4     C4     C3      109.470    3.000
 SMS      O4     C4     C5      109.470    3.000
 SMS      HC4    C4     C3      108.340    3.000
 SMS      HC4    C4     C5      108.340    3.000
 SMS      C3     C4     C5      111.000    3.000
 SMS      C4     C3     HC3     108.340    3.000
 SMS      C4     C3     O2      109.470    3.000
 SMS      C4     C3     C2      111.000    3.000
 SMS      HC3    C3     O2      109.470    3.000
 SMS      HC3    C3     C2      108.340    3.000
 SMS      O2     C3     C2      109.470    3.000
 SMS      C3     O2     C7      111.800    3.000
 SMS      O2     C7     C9      109.470    3.000
 SMS      O2     C7     C8      109.470    3.000
 SMS      O2     C7     O1      109.500    3.000
 SMS      C9     C7     C8      111.000    3.000
 SMS      C9     C7     O1      109.470    3.000
 SMS      C8     C7     O1      109.470    3.000
 SMS      C7     C9     HC93    109.470    3.000
 SMS      C7     C9     HC92    109.470    3.000
 SMS      C7     C9     HC91    109.470    3.000
 SMS      HC93   C9     HC92    109.470    3.000
 SMS      HC93   C9     HC91    109.470    3.000
 SMS      HC92   C9     HC91    109.470    3.000
 SMS      C7     C8     HC83    109.470    3.000
 SMS      C7     C8     HC82    109.470    3.000
 SMS      C7     C8     HC81    109.470    3.000
 SMS      HC83   C8     HC82    109.470    3.000
 SMS      HC83   C8     HC81    109.470    3.000
 SMS      HC82   C8     HC81    109.470    3.000
 SMS      C7     O1     C2      120.000    3.000
 SMS      O1     C2     O3      109.500    3.000
 SMS      O1     C2     C1      109.470    3.000
 SMS      O1     C2     C3      109.470    3.000
 SMS      O3     C2     C1      109.470    3.000
 SMS      O3     C2     C3      109.470    3.000
 SMS      C1     C2     C3      111.000    3.000
 SMS      C2     O3     C6      111.800    3.000
 SMS      O3     C6     HC62    109.470    3.000
 SMS      O3     C6     HC61    109.470    3.000
 SMS      O3     C6     C5      109.470    3.000
 SMS      HC62   C6     HC61    107.900    3.000
 SMS      HC62   C6     C5      109.470    3.000
 SMS      HC61   C6     C5      109.470    3.000
 SMS      C2     C1     HC11    109.470    3.000
 SMS      C2     C1     HC12    109.470    3.000
 SMS      C2     C1     O8      109.500    3.000
 SMS      HC11   C1     HC12    107.900    3.000
 SMS      HC11   C1     O8      109.470    3.000
 SMS      HC12   C1     O8      109.470    3.000
 SMS      C1     O8     S2      120.000    3.000
 SMS      O8     S2     O10     109.500    3.000
 SMS      O8     S2     O9      109.500    3.000
 SMS      O8     S2     N1      109.500    3.000
 SMS      O10    S2     O9      109.500    3.000
 SMS      O10    S2     N1      109.500    3.000
 SMS      O9     S2     N1      109.500    3.000
 SMS      S2     N1     HN12    120.000    3.000
 SMS      S2     N1     HN11    120.000    3.000
 SMS      HN12   N1     HN11    120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 SMS      var_1    O6     S1     O5     C5       120.000   20.000   1
 SMS      var_2    S1     O5     C5     C4        30.000   20.000   1
 SMS      var_3    O5     C5     C6     O3       -60.000   20.000   3
 SMS      var_4    O6     S1     O4     C4      -150.000   20.000   1
 SMS      var_5    S1     O4     C4     C3       -90.000   20.000   1
 SMS      var_6    O4     C4     C5     O5       -30.000   20.000   3
 SMS      var_7    O4     C4     C3     O2       -90.000   20.000   3
 SMS      var_8    C4     C3     O2     C7       -90.000   20.000   1
 SMS      var_9    C3     O2     C7     O1         0.000   20.000   1
 SMS      var_10   O2     C7     C9     HC91      61.119   20.000   1
 SMS      var_11   O2     C7     C8     HC81     162.728   20.000   1
 SMS      var_12   O2     C7     O1     C2       -30.000   20.000   1
 SMS      var_13   C7     O1     C2     C1       -90.000   20.000   1
 SMS      var_14   O1     C2     C3     C4        60.000   20.000   1
 SMS      var_15   O1     C2     O3     C6       -60.000   20.000   1
 SMS      var_16   C2     O3     C6     C5       -60.000   20.000   1
 SMS      var_17   O1     C2     C1     O8       -56.428   20.000   1
 SMS      var_18   C2     C1     O8     S2      -179.931   20.000   1
 SMS      var_19   C1     O8     S2     N1        89.945   20.000   1
 SMS      var_20   O8     S2     N1     HN11    -179.954   20.000   1
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 SMS      chir_01  S2     N1     O10    O9        positiv
 SMS      chir_02  C2     C1     C3     O3        positiv
 SMS      chir_03  C3     C2     C4     O2        positiv
 SMS      chir_04  C4     C3     C5     O4        negativ
 SMS      chir_05  C5     C4     C6     O5        negativ
 SMS      chir_06  S1     O5     O7     O6        positiv
 SMS      chir_07  C7     O2     C9     C8        negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 SMS      plan-1    N1        0.020
 SMS      plan-1    S2        0.000
 SMS      plan-1    HN11      0.000
 SMS      plan-1    HN12      0.000
# ------------------------------------------------------