File: SS2.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (189 lines) | stat: -rw-r--r-- 7,539 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
SS2      SS2 '(1R)-1-PHENYLETHANOL                ' non-polymer        19   9 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_SS2
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 SS2           O1     O    OH1       0.000      0.000    0.000    0.000
 SS2           HO1    H    H         0.000      0.889    0.333    0.180
 SS2           C1     C    CH1       0.000     -0.965    0.938    0.480
 SS2           H1     H    H         0.000     -0.824    1.902   -0.029
 SS2           C8     C    CH3       0.000     -0.788    1.127    1.988
 SS2           H83    H    H         0.000     -0.924    0.198    2.479
 SS2           H82    H    H         0.000      0.187    1.491    2.187
 SS2           H81    H    H         0.000     -1.503    1.822    2.344
 SS2           C2     C    CR6       0.000     -2.352    0.419    0.198
 SS2           C7     C    CR16      0.000     -3.341    1.287   -0.226
 SS2           H7     H    H         0.000     -3.120    2.340   -0.355
 SS2           C6     C    CR16      0.000     -4.613    0.812   -0.485
 SS2           H6     H    H         0.000     -5.388    1.491   -0.818
 SS2           C5     C    CR16      0.000     -4.896   -0.531   -0.319
 SS2           H5     H    H         0.000     -5.893   -0.903   -0.521
 SS2           C4     C    CR16      0.000     -3.907   -1.399    0.105
 SS2           H4     H    H         0.000     -4.129   -2.450    0.238
 SS2           C3     C    CR16      0.000     -2.634   -0.924    0.359
 SS2           H3     H    H         0.000     -1.857   -1.605    0.684
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 SS2      O1     n/a    C1     START
 SS2      HO1    O1     .      .
 SS2      C1     O1     C2     .
 SS2      H1     C1     .      .
 SS2      C8     C1     H81    .
 SS2      H83    C8     .      .
 SS2      H82    C8     .      .
 SS2      H81    C8     .      .
 SS2      C2     C1     C7     .
 SS2      C7     C2     C6     .
 SS2      H7     C7     .      .
 SS2      C6     C7     C5     .
 SS2      H6     C6     .      .
 SS2      C5     C6     C4     .
 SS2      H5     C5     .      .
 SS2      C4     C5     C3     .
 SS2      H4     C4     .      .
 SS2      C3     C4     H3     .
 SS2      H3     C3     .      END
 SS2      C2     C3     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 SS2      C1     O1        single      1.432    0.020
 SS2      HO1    O1        single      0.967    0.020
 SS2      C2     C1        single      1.480    0.020
 SS2      C8     C1        single      1.524    0.020
 SS2      H1     C1        single      1.099    0.020
 SS2      C2     C3        single      1.390    0.020
 SS2      C7     C2        double      1.390    0.020
 SS2      C3     C4        double      1.390    0.020
 SS2      H3     C3        single      1.083    0.020
 SS2      C4     C5        single      1.390    0.020
 SS2      H4     C4        single      1.083    0.020
 SS2      C5     C6        double      1.390    0.020
 SS2      H5     C5        single      1.083    0.020
 SS2      C6     C7        single      1.390    0.020
 SS2      H6     C6        single      1.083    0.020
 SS2      H7     C7        single      1.083    0.020
 SS2      H81    C8        single      1.059    0.020
 SS2      H82    C8        single      1.059    0.020
 SS2      H83    C8        single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 SS2      HO1    O1     C1      109.470    3.000
 SS2      O1     C1     H1      109.470    3.000
 SS2      O1     C1     C8      109.470    3.000
 SS2      O1     C1     C2      109.470    3.000
 SS2      H1     C1     C8      108.340    3.000
 SS2      H1     C1     C2      109.470    3.000
 SS2      C8     C1     C2      109.470    3.000
 SS2      C1     C8     H83     109.470    3.000
 SS2      C1     C8     H82     109.470    3.000
 SS2      C1     C8     H81     109.470    3.000
 SS2      H83    C8     H82     109.470    3.000
 SS2      H83    C8     H81     109.470    3.000
 SS2      H82    C8     H81     109.470    3.000
 SS2      C1     C2     C7      120.000    3.000
 SS2      C1     C2     C3      120.000    3.000
 SS2      C7     C2     C3      120.000    3.000
 SS2      C2     C7     H7      120.000    3.000
 SS2      C2     C7     C6      120.000    3.000
 SS2      H7     C7     C6      120.000    3.000
 SS2      C7     C6     H6      120.000    3.000
 SS2      C7     C6     C5      120.000    3.000
 SS2      H6     C6     C5      120.000    3.000
 SS2      C6     C5     H5      120.000    3.000
 SS2      C6     C5     C4      120.000    3.000
 SS2      H5     C5     C4      120.000    3.000
 SS2      C5     C4     H4      120.000    3.000
 SS2      C5     C4     C3      120.000    3.000
 SS2      H4     C4     C3      120.000    3.000
 SS2      C4     C3     H3      120.000    3.000
 SS2      C4     C3     C2      120.000    3.000
 SS2      H3     C3     C2      120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 SS2      var_1    HO1    O1     C1     C2       179.950   20.000   1
 SS2      var_2    O1     C1     C8     H81     -179.997   20.000   3
 SS2      var_3    O1     C1     C2     C7      -140.035   20.000   1
 SS2      CONST_1  C1     C2     C3     C4       180.000    0.000   0
 SS2      CONST_2  C1     C2     C7     C6       180.000    0.000   0
 SS2      CONST_3  C2     C7     C6     C5         0.000    0.000   0
 SS2      CONST_4  C7     C6     C5     C4         0.000    0.000   0
 SS2      CONST_5  C6     C5     C4     C3         0.000    0.000   0
 SS2      CONST_6  C5     C4     C3     C2         0.000    0.000   0
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 SS2      chir_01  C1     O1     C2     C8        negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 SS2      plan-1    C2        0.020
 SS2      plan-1    C1        0.020
 SS2      plan-1    C3        0.020
 SS2      plan-1    C7        0.020
 SS2      plan-1    C4        0.020
 SS2      plan-1    C5        0.020
 SS2      plan-1    C6        0.020
 SS2      plan-1    H3        0.020
 SS2      plan-1    H4        0.020
 SS2      plan-1    H5        0.020
 SS2      plan-1    H6        0.020
 SS2      plan-1    H7        0.020
# ------------------------------------------------------