File: TBC.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (323 lines) | stat: -rw-r--r-- 14,431 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
TBC      TBC '(9S,10R)-9-HYDROXY-7,8,9,10-TETRAHYD' non-polymer        37  21 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_TBC
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 TBC           O9     O    OH1       0.000      0.000    0.000    0.000
 TBC           HO9    H    H         0.000     -0.075    0.268    0.925
 TBC           C9     C    CH1       0.000     -1.261   -0.479   -0.456
 TBC           H9     H    H         0.000     -1.270   -0.492   -1.555
 TBC           C8     C    CH2       0.000     -1.496   -1.887    0.066
 TBC           H81    H    H         0.000     -1.518   -1.868    1.158
 TBC           H82    H    H         0.000     -0.683   -2.536   -0.269
 TBC           C7     C    CH2       0.000     -2.821   -2.419   -0.460
 TBC           H72    H    H         0.000     -3.035   -3.350    0.069
 TBC           H71    H    H         0.000     -2.692   -2.628   -1.524
 TBC           C6A    C    CR6       0.000     -3.967   -1.456   -0.270
 TBC           C1A    C    CR6       0.000     -3.765   -0.078   -0.049
 TBC           C1B    C    CR66      0.000     -4.887    0.784    0.133
 TBC           C11    C    CR16      0.000     -4.772    2.165    0.408
 TBC           H11    H    H         0.000     -3.785    2.602    0.494
 TBC           C2C    C    CR66      0.000     -6.198    0.248    0.038
 TBC           C2B    C    CR66      0.000     -7.338    1.080    0.202
 TBC           C10    C    CH2       0.000     -2.351    0.467    0.048
 TBC           H102   H    H         0.000     -2.176    0.698    1.101
 TBC           H101   H    H         0.000     -2.331    1.391   -0.534
 TBC           C6     C    CR16      0.000     -5.271   -1.960   -0.370
 TBC           H6     H    H         0.000     -5.419   -3.014   -0.567
 TBC           C5A    C    CR66      0.000     -6.384   -1.128   -0.219
 TBC           C5     C    CR16      0.000     -7.682   -1.649   -0.317
 TBC           H5     H    H         0.000     -7.821   -2.704   -0.517
 TBC           C4     C    CR16      0.000     -8.796   -0.827   -0.160
 TBC           H4     H    H         0.000     -9.790   -1.249   -0.241
 TBC           C3A    C    CR66      0.000     -8.643    0.538    0.101
 TBC           C3     C    CR16      0.000     -9.757    1.373    0.266
 TBC           H3     H    H         0.000    -10.754    0.959    0.189
 TBC           C2     C    CR16      0.000     -9.591    2.731    0.527
 TBC           H2     H    H         0.000    -10.458    3.368    0.651
 TBC           C1     C    CR16      0.000     -8.311    3.272    0.629
 TBC           H1     H    H         0.000     -8.189    4.328    0.833
 TBC           C2A    C    CR66      0.000     -7.179    2.459    0.469
 TBC           C12    C    CR16      0.000     -5.891    2.984    0.571
 TBC           H12    H    H         0.000     -5.757    4.038    0.780
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 TBC      O9     n/a    C9     START
 TBC      HO9    O9     .      .
 TBC      C9     O9     C8     .
 TBC      H9     C9     .      .
 TBC      C8     C9     C7     .
 TBC      H81    C8     .      .
 TBC      H82    C8     .      .
 TBC      C7     C8     C6A    .
 TBC      H72    C7     .      .
 TBC      H71    C7     .      .
 TBC      C6A    C7     C6     .
 TBC      C1A    C6A    C10    .
 TBC      C1B    C1A    C2C    .
 TBC      C11    C1B    H11    .
 TBC      H11    C11    .      .
 TBC      C2C    C1B    C2B    .
 TBC      C2B    C2C    .      .
 TBC      C10    C1A    H101   .
 TBC      H102   C10    .      .
 TBC      H101   C10    .      .
 TBC      C6     C6A    C5A    .
 TBC      H6     C6     .      .
 TBC      C5A    C6     C5     .
 TBC      C5     C5A    C4     .
 TBC      H5     C5     .      .
 TBC      C4     C5     C3A    .
 TBC      H4     C4     .      .
 TBC      C3A    C4     C3     .
 TBC      C3     C3A    C2     .
 TBC      H3     C3     .      .
 TBC      C2     C3     C1     .
 TBC      H2     C2     .      .
 TBC      C1     C2     C2A    .
 TBC      H1     C1     .      .
 TBC      C2A    C1     C12    .
 TBC      C12    C2A    H12    .
 TBC      H12    C12    .      END
 TBC      C10    C9     .    ADD
 TBC      C2A    C2B    .    ADD
 TBC      C2B    C3A    .    ADD
 TBC      C11    C12    .    ADD
 TBC      C5A    C2C    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 TBC      C10    C9        single      1.524    0.020
 TBC      C10    C1A       single      1.511    0.020
 TBC      H101   C10       single      1.092    0.020
 TBC      H102   C10       single      1.092    0.020
 TBC      C2A    C2B       double      1.490    0.020
 TBC      C2A    C1        single      1.390    0.020
 TBC      C12    C2A       single      1.390    0.020
 TBC      C2B    C3A       single      1.490    0.020
 TBC      C2B    C2C       single      1.490    0.020
 TBC      C8     C9        single      1.524    0.020
 TBC      C9     O9        single      1.432    0.020
 TBC      H9     C9        single      1.099    0.020
 TBC      C11    C12       double      1.390    0.020
 TBC      C11    C1B       single      1.390    0.020
 TBC      H11    C11       single      1.083    0.020
 TBC      C1     C2        double      1.390    0.020
 TBC      H1     C1        single      1.083    0.020
 TBC      C2     C3        single      1.390    0.020
 TBC      H2     C2        single      1.083    0.020
 TBC      C3     C3A       double      1.390    0.020
 TBC      H3     C3        single      1.083    0.020
 TBC      C3A    C4        single      1.390    0.020
 TBC      C4     C5        double      1.390    0.020
 TBC      H4     C4        single      1.083    0.020
 TBC      C5     C5A       single      1.390    0.020
 TBC      H5     C5        single      1.083    0.020
 TBC      C5A    C2C       double      1.490    0.020
 TBC      C5A    C6        single      1.390    0.020
 TBC      C2C    C1B       single      1.490    0.020
 TBC      H12    C12       single      1.083    0.020
 TBC      C1B    C1A       double      1.490    0.020
 TBC      C6     C6A       double      1.390    0.020
 TBC      H6     C6        single      1.083    0.020
 TBC      C1A    C6A       single      1.487    0.020
 TBC      C6A    C7        single      1.511    0.020
 TBC      C7     C8        single      1.524    0.020
 TBC      H72    C7        single      1.092    0.020
 TBC      H71    C7        single      1.092    0.020
 TBC      H81    C8        single      1.092    0.020
 TBC      H82    C8        single      1.092    0.020
 TBC      HO9    O9        single      0.967    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 TBC      HO9    O9     C9      109.470    3.000
 TBC      O9     C9     H9      109.470    3.000
 TBC      O9     C9     C8      109.470    3.000
 TBC      O9     C9     C10     109.470    3.000
 TBC      H9     C9     C8      108.340    3.000
 TBC      H9     C9     C10     108.340    3.000
 TBC      C8     C9     C10     109.470    3.000
 TBC      C9     C8     H81     109.470    3.000
 TBC      C9     C8     H82     109.470    3.000
 TBC      C9     C8     C7      111.000    3.000
 TBC      H81    C8     H82     107.900    3.000
 TBC      H81    C8     C7      109.470    3.000
 TBC      H82    C8     C7      109.470    3.000
 TBC      C8     C7     H72     109.470    3.000
 TBC      C8     C7     H71     109.470    3.000
 TBC      C8     C7     C6A     109.470    3.000
 TBC      H72    C7     H71     107.900    3.000
 TBC      H72    C7     C6A     109.470    3.000
 TBC      H71    C7     C6A     109.470    3.000
 TBC      C7     C6A    C1A     120.000    3.000
 TBC      C7     C6A    C6      120.000    3.000
 TBC      C1A    C6A    C6      120.000    3.000
 TBC      C6A    C1A    C1B     120.000    3.000
 TBC      C6A    C1A    C10     120.000    3.000
 TBC      C1B    C1A    C10     120.000    3.000
 TBC      C1A    C1B    C11     120.000    3.000
 TBC      C1A    C1B    C2C     120.000    3.000
 TBC      C11    C1B    C2C     120.000    3.000
 TBC      C1B    C11    H11     120.000    3.000
 TBC      C1B    C11    C12     120.000    3.000
 TBC      H11    C11    C12     120.000    3.000
 TBC      C1B    C2C    C2B     120.000    3.000
 TBC      C1B    C2C    C5A     120.000    3.000
 TBC      C2B    C2C    C5A     120.000    3.000
 TBC      C2C    C2B    C2A     120.000    3.000
 TBC      C2C    C2B    C3A     120.000    3.000
 TBC      C2A    C2B    C3A     120.000    3.000
 TBC      C1A    C10    H102    109.470    3.000
 TBC      C1A    C10    H101    109.470    3.000
 TBC      C1A    C10    C9      109.470    3.000
 TBC      H102   C10    H101    107.900    3.000
 TBC      H102   C10    C9      109.470    3.000
 TBC      H101   C10    C9      109.470    3.000
 TBC      C6A    C6     H6      120.000    3.000
 TBC      C6A    C6     C5A     120.000    3.000
 TBC      H6     C6     C5A     120.000    3.000
 TBC      C6     C5A    C5      120.000    3.000
 TBC      C6     C5A    C2C     120.000    3.000
 TBC      C5     C5A    C2C     120.000    3.000
 TBC      C5A    C5     H5      120.000    3.000
 TBC      C5A    C5     C4      120.000    3.000
 TBC      H5     C5     C4      120.000    3.000
 TBC      C5     C4     H4      120.000    3.000
 TBC      C5     C4     C3A     120.000    3.000
 TBC      H4     C4     C3A     120.000    3.000
 TBC      C4     C3A    C3      120.000    3.000
 TBC      C4     C3A    C2B     120.000    3.000
 TBC      C3     C3A    C2B     120.000    3.000
 TBC      C3A    C3     H3      120.000    3.000
 TBC      C3A    C3     C2      120.000    3.000
 TBC      H3     C3     C2      120.000    3.000
 TBC      C3     C2     H2      120.000    3.000
 TBC      C3     C2     C1      120.000    3.000
 TBC      H2     C2     C1      120.000    3.000
 TBC      C2     C1     H1      120.000    3.000
 TBC      C2     C1     C2A     120.000    3.000
 TBC      H1     C1     C2A     120.000    3.000
 TBC      C1     C2A    C12     120.000    3.000
 TBC      C1     C2A    C2B     120.000    3.000
 TBC      C12    C2A    C2B     120.000    3.000
 TBC      C2A    C12    H12     120.000    3.000
 TBC      C2A    C12    C11     120.000    3.000
 TBC      H12    C12    C11     120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 TBC      var_1    HO9    O9     C9     C8       -77.271   20.000   1
 TBC      var_2    O9     C9     C8     C7       180.000   20.000   3
 TBC      var_3    C9     C8     C7     C6A      -60.000   20.000   3
 TBC      var_4    C8     C7     C6A    C6      -150.000   20.000   2
 TBC      CONST_1  C7     C6A    C1A    C10        0.000    0.000   0
 TBC      CONST_2  C6A    C1A    C1B    C2C        0.000    0.000   0
 TBC      CONST_3  C1A    C1B    C11    C12      180.000    0.000   0
 TBC      CONST_4  C1B    C11    C12    C2A        0.000    0.000   0
 TBC      CONST_5  C1A    C1B    C2C    C2B      180.000    0.000   0
 TBC      CONST_6  C1B    C2C    C2B    C2A        0.000    0.000   0
 TBC      CONST_7  C2C    C2B    C3A    C4         0.000    0.000   0
 TBC      var_5    C6A    C1A    C10    C9         0.000   20.000   2
 TBC      var_6    C1A    C10    C9     O9       180.000   20.000   3
 TBC      CONST_8  C7     C6A    C6     C5A      180.000    0.000   0
 TBC      CONST_9  C6A    C6     C5A    C5       180.000    0.000   0
 TBC      CONST_10 C6     C5A    C2C    C1B        0.000    0.000   0
 TBC      CONST_11 C6     C5A    C5     C4       180.000    0.000   0
 TBC      CONST_12 C5A    C5     C4     C3A        0.000    0.000   0
 TBC      CONST_13 C5     C4     C3A    C3       180.000    0.000   0
 TBC      CONST_14 C4     C3A    C3     C2       180.000    0.000   0
 TBC      CONST_15 C3A    C3     C2     C1         0.000    0.000   0
 TBC      CONST_16 C3     C2     C1     C2A        0.000    0.000   0
 TBC      CONST_17 C2     C1     C2A    C12      180.000    0.000   0
 TBC      CONST_18 C1     C2A    C2B    C2C      180.000    0.000   0
 TBC      CONST_19 C1     C2A    C12    C11      180.000    0.000   0
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 TBC      chir_01  C9     C10    C8     O9        positiv
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 TBC      plan-1    C2A       0.020
 TBC      plan-1    C2B       0.020
 TBC      plan-1    C1        0.020
 TBC      plan-1    C12       0.020
 TBC      plan-1    C11       0.020
 TBC      plan-1    C3A       0.020
 TBC      plan-1    C2C       0.020
 TBC      plan-1    C4        0.020
 TBC      plan-1    C5        0.020
 TBC      plan-1    C1B       0.020
 TBC      plan-1    H11       0.020
 TBC      plan-1    C2        0.020
 TBC      plan-1    H1        0.020
 TBC      plan-1    C3        0.020
 TBC      plan-1    H2        0.020
 TBC      plan-1    H3        0.020
 TBC      plan-1    H4        0.020
 TBC      plan-1    C5A       0.020
 TBC      plan-1    H5        0.020
 TBC      plan-1    C6        0.020
 TBC      plan-1    C6A       0.020
 TBC      plan-1    C1A       0.020
 TBC      plan-1    H12       0.020
 TBC      plan-1    H6        0.020
 TBC      plan-1    C7        0.020
 TBC      plan-1    C10       0.020
# ------------------------------------------------------