File: TC4.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (412 lines) | stat: -rw-r--r-- 19,176 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
TC4      TC4 'BUTYL-PHOSPHINIC ACID 2,3-BIS-BUTYLC' non-polymer        61  26 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_TC4
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 TC4           O6     O    O         0.000      0.000    0.000    0.000
 TC4           C13    C    C         0.000     -1.079    0.492   -0.312
 TC4           N2     N    NH1       0.000     -1.262    1.727   -0.901
 TC4           H2     H    H         0.000     -2.206    2.019   -1.111
 TC4           C14    C    CH2       0.000     -0.180    2.624   -1.232
 TC4           H141   H    H         0.000      0.621    2.468   -0.507
 TC4           H142   H    H         0.000     -0.553    3.647   -1.146
 TC4           C15    C    CH2       0.000      0.355    2.394   -2.641
 TC4           H151   H    H         0.000      0.718    1.366   -2.697
 TC4           H152   H    H         0.000      1.189    3.082   -2.799
 TC4           C16    C    CH2       0.000     -0.707    2.622   -3.719
 TC4           H161   H    H         0.000     -1.097    3.636   -3.611
 TC4           H162   H    H         0.000     -1.516    1.904   -3.564
 TC4           C17    C    CH3       0.000     -0.129    2.444   -5.114
 TC4           H173   H    H         0.000     -0.886    2.614   -5.836
 TC4           H172   H    H         0.000      0.660    3.136   -5.263
 TC4           H171   H    H         0.000      0.243    1.458   -5.222
 TC4           O5     O    O2        0.000     -2.291   -0.120   -0.123
 TC4           C12    C    CH2       0.000     -2.254   -1.409    0.478
 TC4           H121   H    H         0.000     -1.797   -1.341    1.468
 TC4           H122   H    H         0.000     -1.671   -2.090   -0.145
 TC4           C6     C    CH1       0.000     -3.679   -1.933    0.610
 TC4           H6     H    H         0.000     -4.267   -1.246    1.234
 TC4           O3     O    O2        0.000     -4.248   -1.997   -0.700
 TC4           C7     C    C         0.000     -5.544   -2.429   -0.768
 TC4           O4     O    O         0.000     -6.221   -2.753    0.203
 TC4           N1     N    NH1       0.000     -5.963   -2.441   -2.081
 TC4           H1     H    H         0.000     -5.308   -2.150   -2.793
 TC4           C8     C    CH2       0.000     -7.285   -2.847   -2.498
 TC4           H81    H    H         0.000     -7.641   -3.603   -1.796
 TC4           H82    H    H         0.000     -7.203   -3.287   -3.494
 TC4           C9     C    CH2       0.000     -8.268   -1.681   -2.534
 TC4           H91    H    H         0.000     -8.325   -1.261   -1.528
 TC4           H92    H    H         0.000     -9.245   -2.076   -2.819
 TC4           C10    C    CH2       0.000     -7.849   -0.590   -3.521
 TC4           H101   H    H         0.000     -7.742   -1.041   -4.510
 TC4           H102   H    H         0.000     -6.886   -0.186   -3.201
 TC4           C11    C    CH3       0.000     -8.876    0.530   -3.581
 TC4           H113   H    H         0.000     -8.559    1.265   -4.275
 TC4           H112   H    H         0.000     -9.811    0.138   -3.887
 TC4           H111   H    H         0.000     -8.976    0.971   -2.623
 TC4           C5     C    CH2       0.000     -3.704   -3.329    1.223
 TC4           H51    H    H         0.000     -4.739   -3.665    1.308
 TC4           H52    H    H         0.000     -3.251   -3.294    2.216
 TC4           O2     O    O2        0.000     -2.979   -4.228    0.403
 TC4           P1     P    P         0.000     -2.232   -5.497    1.095
 TC4           HP1    H    H         0.000     -1.242   -5.097    1.976
 TC4           O1     O    O         0.000     -1.703   -6.435    0.041
 TC4           C1     C    CH2       0.000     -3.612   -6.294    1.947
 TC4           H11    H    H         0.000     -4.261   -6.725    1.182
 TC4           H12    H    H         0.000     -4.155   -5.515    2.486
 TC4           C2     C    CH2       0.000     -3.182   -7.383    2.921
 TC4           H21    H    H         0.000     -2.618   -8.133    2.363
 TC4           H22    H    H         0.000     -4.082   -7.840    3.337
 TC4           C3     C    CH2       0.000     -2.317   -6.832    4.055
 TC4           H31    H    H         0.000     -2.899   -6.089    4.604
 TC4           H32    H    H         0.000     -1.437   -6.355    3.619
 TC4           C4     C    CH3       0.000     -1.879   -7.937    5.005
 TC4           H43    H    H         0.000     -2.732   -8.401    5.428
 TC4           H42    H    H         0.000     -1.314   -8.659    4.473
 TC4           H41    H    H         0.000     -1.283   -7.525    5.778
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 TC4      O6     n/a    C13    START
 TC4      C13    O6     O5     .
 TC4      N2     C13    C14    .
 TC4      H2     N2     .      .
 TC4      C14    N2     C15    .
 TC4      H141   C14    .      .
 TC4      H142   C14    .      .
 TC4      C15    C14    C16    .
 TC4      H151   C15    .      .
 TC4      H152   C15    .      .
 TC4      C16    C15    C17    .
 TC4      H161   C16    .      .
 TC4      H162   C16    .      .
 TC4      C17    C16    H171   .
 TC4      H173   C17    .      .
 TC4      H172   C17    .      .
 TC4      H171   C17    .      .
 TC4      O5     C13    C12    .
 TC4      C12    O5     C6     .
 TC4      H121   C12    .      .
 TC4      H122   C12    .      .
 TC4      C6     C12    C5     .
 TC4      H6     C6     .      .
 TC4      O3     C6     C7     .
 TC4      C7     O3     N1     .
 TC4      O4     C7     .      .
 TC4      N1     C7     C8     .
 TC4      H1     N1     .      .
 TC4      C8     N1     C9     .
 TC4      H81    C8     .      .
 TC4      H82    C8     .      .
 TC4      C9     C8     C10    .
 TC4      H91    C9     .      .
 TC4      H92    C9     .      .
 TC4      C10    C9     C11    .
 TC4      H101   C10    .      .
 TC4      H102   C10    .      .
 TC4      C11    C10    H111   .
 TC4      H113   C11    .      .
 TC4      H112   C11    .      .
 TC4      H111   C11    .      .
 TC4      C5     C6     O2     .
 TC4      H51    C5     .      .
 TC4      H52    C5     .      .
 TC4      O2     C5     P1     .
 TC4      P1     O2     C1     .
 TC4      HP1    P1     .      .
 TC4      O1     P1     .      .
 TC4      C1     P1     C2     .
 TC4      H11    C1     .      .
 TC4      H12    C1     .      .
 TC4      C2     C1     C3     .
 TC4      H21    C2     .      .
 TC4      H22    C2     .      .
 TC4      C3     C2     C4     .
 TC4      H31    C3     .      .
 TC4      H32    C3     .      .
 TC4      C4     C3     H41    .
 TC4      H43    C4     .      .
 TC4      H42    C4     .      .
 TC4      H41    C4     .      END
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 TC4      C2     C1        single      1.524    0.020
 TC4      C1     P1        single      1.812    0.020
 TC4      H11    C1        single      1.092    0.020
 TC4      H12    C1        single      1.092    0.020
 TC4      C3     C2        single      1.524    0.020
 TC4      H21    C2        single      1.092    0.020
 TC4      H22    C2        single      1.092    0.020
 TC4      C4     C3        single      1.513    0.020
 TC4      H31    C3        single      1.092    0.020
 TC4      H32    C3        single      1.092    0.020
 TC4      H41    C4        single      1.059    0.020
 TC4      H42    C4        single      1.059    0.020
 TC4      H43    C4        single      1.059    0.020
 TC4      C5     C6        single      1.524    0.020
 TC4      O2     C5        single      1.426    0.020
 TC4      H51    C5        single      1.092    0.020
 TC4      H52    C5        single      1.092    0.020
 TC4      C6     C12       single      1.524    0.020
 TC4      O3     C6        single      1.426    0.020
 TC4      H6     C6        single      1.099    0.020
 TC4      N1     C7        single      1.330    0.020
 TC4      C7     O3        single      1.454    0.020
 TC4      O4     C7        double      1.220    0.020
 TC4      C9     C8        single      1.524    0.020
 TC4      C8     N1        single      1.450    0.020
 TC4      H81    C8        single      1.092    0.020
 TC4      H82    C8        single      1.092    0.020
 TC4      C10    C9        single      1.524    0.020
 TC4      H91    C9        single      1.092    0.020
 TC4      H92    C9        single      1.092    0.020
 TC4      C11    C10       single      1.513    0.020
 TC4      H101   C10       single      1.092    0.020
 TC4      H102   C10       single      1.092    0.020
 TC4      H111   C11       single      1.059    0.020
 TC4      H112   C11       single      1.059    0.020
 TC4      H113   C11       single      1.059    0.020
 TC4      C12    O5        single      1.426    0.020
 TC4      H121   C12       single      1.092    0.020
 TC4      H122   C12       single      1.092    0.020
 TC4      N2     C13       single      1.330    0.020
 TC4      O5     C13       single      1.454    0.020
 TC4      C13    O6        double      1.220    0.020
 TC4      C15    C14       single      1.524    0.020
 TC4      C14    N2        single      1.450    0.020
 TC4      H141   C14       single      1.092    0.020
 TC4      H142   C14       single      1.092    0.020
 TC4      C16    C15       single      1.524    0.020
 TC4      H151   C15       single      1.092    0.020
 TC4      H152   C15       single      1.092    0.020
 TC4      C17    C16       single      1.513    0.020
 TC4      H161   C16       single      1.092    0.020
 TC4      H162   C16       single      1.092    0.020
 TC4      H171   C17       single      1.059    0.020
 TC4      H172   C17       single      1.059    0.020
 TC4      H173   C17       single      1.059    0.020
 TC4      H1     N1        single      1.010    0.020
 TC4      H2     N2        single      1.010    0.020
 TC4      O1     P1        double      1.480    0.020
 TC4      P1     O2        single      1.610    0.020
 TC4      HP1    P1        single      1.383    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 TC4      O6     C13    N2      123.000    3.000
 TC4      O6     C13    O5      119.000    3.000
 TC4      N2     C13    O5      118.000    3.000
 TC4      C13    N2     H2      120.000    3.000
 TC4      C13    N2     C14     121.500    3.000
 TC4      H2     N2     C14     118.500    3.000
 TC4      N2     C14    H141    109.470    3.000
 TC4      N2     C14    H142    109.470    3.000
 TC4      N2     C14    C15     112.000    3.000
 TC4      H141   C14    H142    107.900    3.000
 TC4      H141   C14    C15     109.470    3.000
 TC4      H142   C14    C15     109.470    3.000
 TC4      C14    C15    H151    109.470    3.000
 TC4      C14    C15    H152    109.470    3.000
 TC4      C14    C15    C16     111.000    3.000
 TC4      H151   C15    H152    107.900    3.000
 TC4      H151   C15    C16     109.470    3.000
 TC4      H152   C15    C16     109.470    3.000
 TC4      C15    C16    H161    109.470    3.000
 TC4      C15    C16    H162    109.470    3.000
 TC4      C15    C16    C17     111.000    3.000
 TC4      H161   C16    H162    107.900    3.000
 TC4      H161   C16    C17     109.470    3.000
 TC4      H162   C16    C17     109.470    3.000
 TC4      C16    C17    H173    109.470    3.000
 TC4      C16    C17    H172    109.470    3.000
 TC4      C16    C17    H171    109.470    3.000
 TC4      H173   C17    H172    109.470    3.000
 TC4      H173   C17    H171    109.470    3.000
 TC4      H172   C17    H171    109.470    3.000
 TC4      C13    O5     C12     120.000    3.000
 TC4      O5     C12    H121    109.470    3.000
 TC4      O5     C12    H122    109.470    3.000
 TC4      O5     C12    C6      109.470    3.000
 TC4      H121   C12    H122    107.900    3.000
 TC4      H121   C12    C6      109.470    3.000
 TC4      H122   C12    C6      109.470    3.000
 TC4      C12    C6     H6      108.340    3.000
 TC4      C12    C6     O3      109.470    3.000
 TC4      C12    C6     C5      109.470    3.000
 TC4      H6     C6     O3      109.470    3.000
 TC4      H6     C6     C5      108.340    3.000
 TC4      O3     C6     C5      109.470    3.000
 TC4      C6     O3     C7      111.800    3.000
 TC4      O3     C7     O4      119.000    3.000
 TC4      O3     C7     N1      118.000    3.000
 TC4      O4     C7     N1      123.000    3.000
 TC4      C7     N1     H1      120.000    3.000
 TC4      C7     N1     C8      121.500    3.000
 TC4      H1     N1     C8      118.500    3.000
 TC4      N1     C8     H81     109.470    3.000
 TC4      N1     C8     H82     109.470    3.000
 TC4      N1     C8     C9      112.000    3.000
 TC4      H81    C8     H82     107.900    3.000
 TC4      H81    C8     C9      109.470    3.000
 TC4      H82    C8     C9      109.470    3.000
 TC4      C8     C9     H91     109.470    3.000
 TC4      C8     C9     H92     109.470    3.000
 TC4      C8     C9     C10     111.000    3.000
 TC4      H91    C9     H92     107.900    3.000
 TC4      H91    C9     C10     109.470    3.000
 TC4      H92    C9     C10     109.470    3.000
 TC4      C9     C10    H101    109.470    3.000
 TC4      C9     C10    H102    109.470    3.000
 TC4      C9     C10    C11     111.000    3.000
 TC4      H101   C10    H102    107.900    3.000
 TC4      H101   C10    C11     109.470    3.000
 TC4      H102   C10    C11     109.470    3.000
 TC4      C10    C11    H113    109.470    3.000
 TC4      C10    C11    H112    109.470    3.000
 TC4      C10    C11    H111    109.470    3.000
 TC4      H113   C11    H112    109.470    3.000
 TC4      H113   C11    H111    109.470    3.000
 TC4      H112   C11    H111    109.470    3.000
 TC4      C6     C5     H51     109.470    3.000
 TC4      C6     C5     H52     109.470    3.000
 TC4      C6     C5     O2      109.470    3.000
 TC4      H51    C5     H52     107.900    3.000
 TC4      H51    C5     O2      109.470    3.000
 TC4      H52    C5     O2      109.470    3.000
 TC4      C5     O2     P1      120.500    3.000
 TC4      O2     P1     HP1     109.500    3.000
 TC4      O2     P1     O1      109.500    3.000
 TC4      O2     P1     C1      109.500    3.000
 TC4      HP1    P1     O1      109.500    3.000
 TC4      HP1    P1     C1      109.500    3.000
 TC4      O1     P1     C1      109.500    3.000
 TC4      P1     C1     H11     109.500    3.000
 TC4      P1     C1     H12     109.500    3.000
 TC4      P1     C1     C2      109.500    3.000
 TC4      H11    C1     H12     107.900    3.000
 TC4      H11    C1     C2      109.470    3.000
 TC4      H12    C1     C2      109.470    3.000
 TC4      C1     C2     H21     109.470    3.000
 TC4      C1     C2     H22     109.470    3.000
 TC4      C1     C2     C3      111.000    3.000
 TC4      H21    C2     H22     107.900    3.000
 TC4      H21    C2     C3      109.470    3.000
 TC4      H22    C2     C3      109.470    3.000
 TC4      C2     C3     H31     109.470    3.000
 TC4      C2     C3     H32     109.470    3.000
 TC4      C2     C3     C4      111.000    3.000
 TC4      H31    C3     H32     107.900    3.000
 TC4      H31    C3     C4      109.470    3.000
 TC4      H32    C3     C4      109.470    3.000
 TC4      C3     C4     H43     109.470    3.000
 TC4      C3     C4     H42     109.470    3.000
 TC4      C3     C4     H41     109.470    3.000
 TC4      H43    C4     H42     109.470    3.000
 TC4      H43    C4     H41     109.470    3.000
 TC4      H42    C4     H41     109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 TC4      CONST_1  O6     C13    N2     C14        0.000    0.000   0
 TC4      var_1    C13    N2     C14    C15       90.058   20.000   3
 TC4      var_2    N2     C14    C15    C16       61.094   20.000   3
 TC4      var_3    C14    C15    C16    C17      177.523   20.000   3
 TC4      var_4    C15    C16    C17    H171      60.381   20.000   3
 TC4      var_5    O6     C13    O5     C12        0.071   20.000   1
 TC4      var_6    C13    O5     C12    C6       179.974   20.000   1
 TC4      var_7    O5     C12    C6     C5       178.773   20.000   3
 TC4      var_8    C12    C6     O3     C7      -178.921   20.000   1
 TC4      var_9    C6     O3     C7     N1      -179.995   20.000   1
 TC4      CONST_2  O3     C7     N1     C8       180.000    0.000   0
 TC4      var_10   C7     N1     C8     C9        89.940   20.000   3
 TC4      var_11   N1     C8     C9     C10       61.167   20.000   3
 TC4      var_12   C8     C9     C10    C11      177.536   20.000   3
 TC4      var_13   C9     C10    C11    H111      60.276   20.000   3
 TC4      var_14   C12    C6     C5     O2       -60.260   20.000   3
 TC4      var_15   C6     C5     O2     P1       149.998   20.000   1
 TC4      var_16   C5     O2     P1     C1        56.242   20.000   1
 TC4      var_17   O2     P1     C1     C2      -168.803   20.000   1
 TC4      var_18   P1     C1     C2     C3        62.459   20.000   3
 TC4      var_19   C1     C2     C3     C4      -179.073   20.000   3
 TC4      var_20   C2     C3     C4     H41     -179.982   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 TC4      chir_01  C6     C5     C12    O3        negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 TC4      plan-1    C7        0.020
 TC4      plan-1    N1        0.020
 TC4      plan-1    O3        0.020
 TC4      plan-1    O4        0.020
 TC4      plan-1    H1        0.020
 TC4      plan-2    C13       0.020
 TC4      plan-2    N2        0.020
 TC4      plan-2    O5        0.020
 TC4      plan-2    O6        0.020
 TC4      plan-2    H2        0.020
 TC4      plan-3    N1        0.020
 TC4      plan-3    C7        0.020
 TC4      plan-3    C8        0.020
 TC4      plan-3    H1        0.020
 TC4      plan-4    N2        0.020
 TC4      plan-4    C13       0.020
 TC4      plan-4    C14       0.020
 TC4      plan-4    H2        0.020
# ------------------------------------------------------