File: TCM.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (237 lines) | stat: -rw-r--r-- 10,140 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
TCM      TCM 'THIOCAMPHOR                         ' non-polymer        27  11 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_TCM
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 TCM           S2     S    S1        0.000      0.000    0.000    0.000
 TCM           C2     C    C         0.000     -1.366   -0.110    0.825
 TCM           C3     C    CH2       0.000     -1.626   -0.908    2.108
 TCM           H31    H    H         0.000     -0.991   -0.570    2.930
 TCM           H32    H    H         0.000     -1.480   -1.979    1.953
 TCM           C4     C    CH1       0.000     -3.120   -0.631    2.456
 TCM           H4     H    H         0.000     -3.602   -1.351    3.132
 TCM           C5     C    CH2       0.000     -3.163    0.863    2.899
 TCM           H51    H    H         0.000     -2.390    1.092    3.635
 TCM           H52    H    H         0.000     -4.140    1.141    3.300
 TCM           C6     C    CH2       0.000     -2.892    1.658    1.600
 TCM           H62    H    H         0.000     -1.982    2.257    1.672
 TCM           H61    H    H         0.000     -3.732    2.304    1.336
 TCM           C7     C    CT        0.000     -3.727   -0.523    1.013
 TCM           C8     C    CH3       0.000     -3.617   -1.840    0.242
 TCM           H83    H    H         0.000     -3.917   -1.689   -0.762
 TCM           H82    H    H         0.000     -2.613   -2.179    0.263
 TCM           H81    H    H         0.000     -4.243   -2.567    0.691
 TCM           C9     C    CH3       0.000     -5.163    0.005    1.032
 TCM           H93    H    H         0.000     -5.201    0.909    1.583
 TCM           H92    H    H         0.000     -5.487    0.185    0.039
 TCM           H91    H    H         0.000     -5.798   -0.711    1.485
 TCM           C1     C    CT        0.000     -2.709    0.552    0.492
 TCM           C10    C    CH3       0.000     -2.901    1.017   -0.952
 TCM           H103   H    H         0.000     -2.774    0.195   -1.609
 TCM           H102   H    H         0.000     -3.876    1.414   -1.070
 TCM           H101   H    H         0.000     -2.186    1.764   -1.182
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 TCM      S2     n/a    C2     START
 TCM      C2     S2     C3     .
 TCM      C3     C2     C4     .
 TCM      H31    C3     .      .
 TCM      H32    C3     .      .
 TCM      C4     C3     C7     .
 TCM      H4     C4     .      .
 TCM      C5     C4     C6     .
 TCM      H51    C5     .      .
 TCM      H52    C5     .      .
 TCM      C6     C5     H61    .
 TCM      H62    C6     .      .
 TCM      H61    C6     .      .
 TCM      C7     C4     C1     .
 TCM      C8     C7     H81    .
 TCM      H83    C8     .      .
 TCM      H82    C8     .      .
 TCM      H81    C8     .      .
 TCM      C9     C7     H91    .
 TCM      H93    C9     .      .
 TCM      H92    C9     .      .
 TCM      H91    C9     .      .
 TCM      C1     C7     C10    .
 TCM      C10    C1     H101   .
 TCM      H103   C10    .      .
 TCM      H102   C10    .      .
 TCM      H101   C10    .      END
 TCM      C1     C2     .    ADD
 TCM      C1     C6     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 TCM      C1     C2        single      1.507    0.020
 TCM      C1     C6        single      1.524    0.020
 TCM      C1     C7        single      1.524    0.020
 TCM      C10    C1        single      1.524    0.020
 TCM      C3     C2        single      1.510    0.020
 TCM      C2     S2        double      1.565    0.020
 TCM      C4     C3        single      1.524    0.020
 TCM      H31    C3        single      1.092    0.020
 TCM      H32    C3        single      1.092    0.020
 TCM      C5     C4        single      1.524    0.020
 TCM      C7     C4        single      1.524    0.020
 TCM      H4     C4        single      1.099    0.020
 TCM      C6     C5        single      1.524    0.020
 TCM      H51    C5        single      1.092    0.020
 TCM      H52    C5        single      1.092    0.020
 TCM      H61    C6        single      1.092    0.020
 TCM      H62    C6        single      1.092    0.020
 TCM      C8     C7        single      1.524    0.020
 TCM      C9     C7        single      1.524    0.020
 TCM      H81    C8        single      1.059    0.020
 TCM      H82    C8        single      1.059    0.020
 TCM      H83    C8        single      1.059    0.020
 TCM      H91    C9        single      1.059    0.020
 TCM      H92    C9        single      1.059    0.020
 TCM      H93    C9        single      1.059    0.020
 TCM      H101   C10       single      1.059    0.020
 TCM      H102   C10       single      1.059    0.020
 TCM      H103   C10       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 TCM      S2     C2     C3      120.000    3.000
 TCM      S2     C2     C1      120.000    3.000
 TCM      C3     C2     C1      120.000    3.000
 TCM      C2     C3     H31     109.470    3.000
 TCM      C2     C3     H32     109.470    3.000
 TCM      C2     C3     C4      109.470    3.000
 TCM      H31    C3     H32     107.900    3.000
 TCM      H31    C3     C4      109.470    3.000
 TCM      H32    C3     C4      109.470    3.000
 TCM      C3     C4     H4      108.340    3.000
 TCM      C3     C4     C5      109.470    3.000
 TCM      C3     C4     C7      111.000    3.000
 TCM      H4     C4     C5      108.340    3.000
 TCM      H4     C4     C7      108.340    3.000
 TCM      C5     C4     C7      111.000    3.000
 TCM      C4     C5     H51     109.470    3.000
 TCM      C4     C5     H52     109.470    3.000
 TCM      C4     C5     C6      111.000    3.000
 TCM      H51    C5     H52     107.900    3.000
 TCM      H51    C5     C6      109.470    3.000
 TCM      H52    C5     C6      109.470    3.000
 TCM      C5     C6     H62     109.470    3.000
 TCM      C5     C6     H61     109.470    3.000
 TCM      C5     C6     C1      111.000    3.000
 TCM      H62    C6     H61     107.900    3.000
 TCM      H62    C6     C1      109.470    3.000
 TCM      H61    C6     C1      109.470    3.000
 TCM      C4     C7     C8      111.000    3.000
 TCM      C4     C7     C9      111.000    3.000
 TCM      C4     C7     C1      111.000    3.000
 TCM      C8     C7     C9      111.000    3.000
 TCM      C8     C7     C1      111.000    3.000
 TCM      C9     C7     C1      111.000    3.000
 TCM      C7     C8     H83     109.470    3.000
 TCM      C7     C8     H82     109.470    3.000
 TCM      C7     C8     H81     109.470    3.000
 TCM      H83    C8     H82     109.470    3.000
 TCM      H83    C8     H81     109.470    3.000
 TCM      H82    C8     H81     109.470    3.000
 TCM      C7     C9     H93     109.470    3.000
 TCM      C7     C9     H92     109.470    3.000
 TCM      C7     C9     H91     109.470    3.000
 TCM      H93    C9     H92     109.470    3.000
 TCM      H93    C9     H91     109.470    3.000
 TCM      H92    C9     H91     109.470    3.000
 TCM      C7     C1     C10     111.000    3.000
 TCM      C7     C1     C2      111.000    3.000
 TCM      C7     C1     C6      111.000    3.000
 TCM      C2     C1     C6      109.470    3.000
 TCM      C10    C1     C2      109.470    3.000
 TCM      C10    C1     C6      111.000    3.000
 TCM      C1     C10    H103    109.470    3.000
 TCM      C1     C10    H102    109.470    3.000
 TCM      C1     C10    H101    109.470    3.000
 TCM      H103   C10    H102    109.470    3.000
 TCM      H103   C10    H101    109.470    3.000
 TCM      H102   C10    H101    109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 TCM      var_1    S2     C2     C3     C4       180.000   20.000   3
 TCM      var_2    C2     C3     C4     C7        30.000   20.000   3
 TCM      var_3    C3     C4     C5     C6        60.000   20.000   3
 TCM      var_4    C4     C5     C6     C1         0.000   20.000   3
 TCM      var_5    C3     C4     C7     C1       -52.757   20.000   1
 TCM      var_6    C4     C7     C8     H81       67.556   20.000   1
 TCM      var_7    C4     C7     C9     H91      -67.508   20.000   1
 TCM      var_8    C4     C7     C1     C10     -179.737   20.000   1
 TCM      var_9    C7     C1     C2     S2       150.000   20.000   1
 TCM      var_10   C7     C1     C6     C5        30.000   20.000   1
 TCM      var_11   C7     C1     C10    H101     177.791   20.000   1
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 TCM      chir_01  C1     C2     C6     C7        positiv
 TCM      chir_02  C4     C3     C5     C7        negativ
 TCM      chir_03  C7     C1     C4     C8        positiv
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 TCM      plan-1    C2        0.020
 TCM      plan-1    C1        0.000
 TCM      plan-1    C3        0.000
 TCM      plan-1    S2        0.000
# ------------------------------------------------------