File: TOE.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (196 lines) | stat: -rw-r--r-- 8,447 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
TOE      TOE '2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHO' non-polymer        26  11 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_TOE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 TOE           "CK'"  C    CH3       0.000      0.000    0.000    0.000
 TOE           "HK'1" H    H         0.000      0.642    0.479    0.693
 TOE           "HK'2" H    H         0.000     -0.258   -0.960    0.365
 TOE           "HK'3" H    H         0.000      0.497   -0.098   -0.930
 TOE           "OI'"  O    O2        0.000     -1.185    0.780   -0.171
 TOE           "CH'"  C    CH2       0.000     -1.806    0.875    1.112
 TOE           "HH'1" H    H         0.000     -1.121    1.358    1.813
 TOE           "HH'2" H    H         0.000     -2.049   -0.126    1.474
 TOE           "CG'"  C    CH2       0.000     -3.087    1.703    0.998
 TOE           "HG'1" H    H         0.000     -2.855    2.673    0.554
 TOE           "HG'2" H    H         0.000     -3.513    1.852    1.993
 TOE           "OF'"  O    O2        0.000     -4.029    1.013    0.173
 TOE           "CE'"  C    CH2       0.000     -5.197    1.832    0.107
 TOE           "HE'1" H    H         0.000     -4.938    2.801   -0.325
 TOE           "HE'2" H    H         0.000     -5.596    1.979    1.113
 TOE           "CD'"  C    CH2       0.000     -6.251    1.148   -0.767
 TOE           "HD'1" H    H         0.000     -5.822    0.923   -1.745
 TOE           "HD'2" H    H         0.000     -7.108    1.813   -0.891
 TOE           "OC'"  O    O2        0.000     -6.674   -0.065   -0.140
 TOE           "CB'"  C    CH2       0.000     -7.652   -0.655   -0.999
 TOE           "HB'1" H    H         0.000     -7.205   -0.857   -1.974
 TOE           "HB'2" H    H         0.000     -8.491    0.034   -1.120
 TOE           "CA'"  C    CH2       0.000     -8.149   -1.964   -0.383
 TOE           "HA'2" H    H         0.000     -7.297   -2.616   -0.180
 TOE           "HA'1" H    H         0.000     -8.828   -2.459   -1.080
 TOE           "O2'"  O    O        -1.000     -8.838   -1.684    0.838
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 TOE      "CK'"  n/a    "OI'"  START
 TOE      "HK'1" "CK'"  .      .
 TOE      "HK'2" "CK'"  .      .
 TOE      "HK'3" "CK'"  .      .
 TOE      "OI'"  "CK'"  "CH'"  .
 TOE      "CH'"  "OI'"  "CG'"  .
 TOE      "HH'1" "CH'"  .      .
 TOE      "HH'2" "CH'"  .      .
 TOE      "CG'"  "CH'"  "OF'"  .
 TOE      "HG'1" "CG'"  .      .
 TOE      "HG'2" "CG'"  .      .
 TOE      "OF'"  "CG'"  "CE'"  .
 TOE      "CE'"  "OF'"  "CD'"  .
 TOE      "HE'1" "CE'"  .      .
 TOE      "HE'2" "CE'"  .      .
 TOE      "CD'"  "CE'"  "OC'"  .
 TOE      "HD'1" "CD'"  .      .
 TOE      "HD'2" "CD'"  .      .
 TOE      "OC'"  "CD'"  "CB'"  .
 TOE      "CB'"  "OC'"  "CA'"  .
 TOE      "HB'1" "CB'"  .      .
 TOE      "HB'2" "CB'"  .      .
 TOE      "CA'"  "CB'"  "O2'"  .
 TOE      "HA'2" "CA'"  .      .
 TOE      "HA'1" "CA'"  .      .
 TOE      "O2'"  "CA'"  .      END
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 TOE      "O2'"  "CA'"     single      1.420    0.020
 TOE      "CA'"  "CB'"     single      1.524    0.020
 TOE      "HA'1" "CA'"     single      1.092    0.020
 TOE      "HA'2" "CA'"     single      1.092    0.020
 TOE      "CB'"  "OC'"     single      1.426    0.020
 TOE      "HB'1" "CB'"     single      1.092    0.020
 TOE      "HB'2" "CB'"     single      1.092    0.020
 TOE      "OC'"  "CD'"     single      1.426    0.020
 TOE      "CD'"  "CE'"     single      1.524    0.020
 TOE      "HD'1" "CD'"     single      1.092    0.020
 TOE      "HD'2" "CD'"     single      1.092    0.020
 TOE      "CE'"  "OF'"     single      1.426    0.020
 TOE      "HE'1" "CE'"     single      1.092    0.020
 TOE      "HE'2" "CE'"     single      1.092    0.020
 TOE      "OF'"  "CG'"     single      1.426    0.020
 TOE      "CG'"  "CH'"     single      1.524    0.020
 TOE      "HG'1" "CG'"     single      1.092    0.020
 TOE      "HG'2" "CG'"     single      1.092    0.020
 TOE      "CH'"  "OI'"     single      1.426    0.020
 TOE      "HH'1" "CH'"     single      1.092    0.020
 TOE      "HH'2" "CH'"     single      1.092    0.020
 TOE      "OI'"  "CK'"     single      1.426    0.020
 TOE      "HK'1" "CK'"     single      1.059    0.020
 TOE      "HK'2" "CK'"     single      1.059    0.020
 TOE      "HK'3" "CK'"     single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 TOE      "HK'1" "CK'"  "HK'2"  109.470    3.000
 TOE      "HK'1" "CK'"  "HK'3"  109.470    3.000
 TOE      "HK'2" "CK'"  "HK'3"  109.470    3.000
 TOE      "HK'1" "CK'"  "OI'"   109.470    3.000
 TOE      "HK'2" "CK'"  "OI'"   109.470    3.000
 TOE      "HK'3" "CK'"  "OI'"   109.470    3.000
 TOE      "CK'"  "OI'"  "CH'"   111.800    3.000
 TOE      "OI'"  "CH'"  "HH'1"  109.470    3.000
 TOE      "OI'"  "CH'"  "HH'2"  109.470    3.000
 TOE      "OI'"  "CH'"  "CG'"   109.470    3.000
 TOE      "HH'1" "CH'"  "HH'2"  107.900    3.000
 TOE      "HH'1" "CH'"  "CG'"   109.470    3.000
 TOE      "HH'2" "CH'"  "CG'"   109.470    3.000
 TOE      "CH'"  "CG'"  "HG'1"  109.470    3.000
 TOE      "CH'"  "CG'"  "HG'2"  109.470    3.000
 TOE      "CH'"  "CG'"  "OF'"   109.470    3.000
 TOE      "HG'1" "CG'"  "HG'2"  107.900    3.000
 TOE      "HG'1" "CG'"  "OF'"   109.470    3.000
 TOE      "HG'2" "CG'"  "OF'"   109.470    3.000
 TOE      "CG'"  "OF'"  "CE'"   111.800    3.000
 TOE      "OF'"  "CE'"  "HE'1"  109.470    3.000
 TOE      "OF'"  "CE'"  "HE'2"  109.470    3.000
 TOE      "OF'"  "CE'"  "CD'"   109.470    3.000
 TOE      "HE'1" "CE'"  "HE'2"  107.900    3.000
 TOE      "HE'1" "CE'"  "CD'"   109.470    3.000
 TOE      "HE'2" "CE'"  "CD'"   109.470    3.000
 TOE      "CE'"  "CD'"  "HD'1"  109.470    3.000
 TOE      "CE'"  "CD'"  "HD'2"  109.470    3.000
 TOE      "CE'"  "CD'"  "OC'"   109.470    3.000
 TOE      "HD'1" "CD'"  "HD'2"  107.900    3.000
 TOE      "HD'1" "CD'"  "OC'"   109.470    3.000
 TOE      "HD'2" "CD'"  "OC'"   109.470    3.000
 TOE      "CD'"  "OC'"  "CB'"   111.800    3.000
 TOE      "OC'"  "CB'"  "HB'1"  109.470    3.000
 TOE      "OC'"  "CB'"  "HB'2"  109.470    3.000
 TOE      "OC'"  "CB'"  "CA'"   109.470    3.000
 TOE      "HB'1" "CB'"  "HB'2"  107.900    3.000
 TOE      "HB'1" "CB'"  "CA'"   109.470    3.000
 TOE      "HB'2" "CB'"  "CA'"   109.470    3.000
 TOE      "CB'"  "CA'"  "HA'2"  109.470    3.000
 TOE      "CB'"  "CA'"  "HA'1"  109.470    3.000
 TOE      "CB'"  "CA'"  "O2'"   109.470    3.000
 TOE      "HA'2" "CA'"  "HA'1"  107.900    3.000
 TOE      "HA'2" "CA'"  "O2'"   109.470    3.000
 TOE      "HA'1" "CA'"  "O2'"   109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 TOE      var_1    "HK'3" "CK'"  "OI'"  "CH'"   -179.995   20.000   1
 TOE      var_2    "CK'"  "OI'"  "CH'"  "CG'"    179.992   20.000   1
 TOE      var_3    "OI'"  "CH'"  "CG'"  "OF'"     65.008   20.000   3
 TOE      var_4    "CH'"  "CG'"  "OF'"  "CE'"    179.967   20.000   1
 TOE      var_5    "CG'"  "OF'"  "CE'"  "CD'"    179.975   20.000   1
 TOE      var_6    "OF'"  "CE'"  "CD'"  "OC'"     64.994   20.000   3
 TOE      var_7    "CE'"  "CD'"  "OC'"  "CB'"    179.993   20.000   1
 TOE      var_8    "CD'"  "OC'"  "CB'"  "CA'"   -179.993   20.000   1
 TOE      var_9    "OC'"  "CB'"  "CA'"  "O2'"     65.049   20.000   3
# ------------------------------------------------------