File: TTC.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (417 lines) | stat: -rw-r--r-- 19,366 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
TTC      TTC '"(S)-10-[(DIMETHYLAMINO)METHYL]-4-ET' non-polymer        54  31 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_TTC
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 TTC           O18    O    O         0.000      0.000    0.000    0.000
 TTC           C14    C    CR6       0.000     -0.924   -0.013   -0.799
 TTC           C15    C    CR6       0.000     -0.653    0.116   -2.177
 TTC           C19    C    CH2       0.000      0.783    0.246   -2.611
 TTC           H191   H    H         0.000      1.302   -0.708   -2.494
 TTC           H192   H    H         0.000      1.290    1.010   -2.019
 TTC           O22    O    O2       -0.500      0.788    0.646   -4.059
 TTC           C20    C    C         0.000     -0.014    0.122   -4.864
 TTC           O23    O    O        -0.500      0.378   -0.497   -5.878
 TTC           C21    C    CT        0.000     -1.482    0.275   -4.542
 TTC           O24    O    OH1       0.000     -2.231   -0.724   -5.238
 TTC           H241   H    H         0.000     -2.097   -0.622   -6.190
 TTC           C25    C    CH2       0.000     -1.957    1.662   -4.978
 TTC           H251   H    H         0.000     -1.386    2.426   -4.445
 TTC           H252   H    H         0.000     -3.018    1.773   -4.743
 TTC           C31    C    CH3       0.000     -1.747    1.824   -6.484
 TTC           H313   H    H         0.000     -0.718    1.716   -6.714
 TTC           H312   H    H         0.000     -2.301    1.083   -7.003
 TTC           H311   H    H         0.000     -2.076    2.785   -6.789
 TTC           N12    N    NR56      0.000     -2.187   -0.150   -0.351
 TTC           C11    C    CH2       0.000     -2.710   -0.304    1.011
 TTC           H111   H    H         0.000     -2.458    0.562    1.626
 TTC           H112   H    H         0.000     -2.318   -1.208    1.480
 TTC           C8     C    CR56      0.000     -4.209   -0.412    0.883
 TTC           C7     C    CR16      0.000     -5.204   -0.565    1.797
 TTC           H71    H    H         0.000     -4.983   -0.634    2.854
 TTC           C6     C    CR66      0.000     -6.532   -0.631    1.328
 TTC           C1     C    CR6       0.000     -7.608   -0.787    2.214
 TTC           C27    C    CH2       0.000     -7.363   -0.886    3.696
 TTC           H271   H    H         0.000     -6.387   -1.343    3.873
 TTC           H272   H    H         0.000     -8.140   -1.502    4.152
 TTC           N28    N    NT        0.000     -7.390    0.457    4.288
 TTC           C30    C    CH3       0.000     -6.234    1.181    3.745
 TTC           H303   H    H         0.000     -5.343    0.673    4.008
 TTC           H302   H    H         0.000     -6.313    1.233    2.690
 TTC           H301   H    H         0.000     -6.211    2.162    4.145
 TTC           C29    C    CH3       0.000     -7.145    0.290    5.727
 TTC           H293   H    H         0.000     -7.902   -0.321    6.145
 TTC           H292   H    H         0.000     -6.201   -0.167    5.873
 TTC           H291   H    H         0.000     -7.156    1.238    6.199
 TTC           C2     C    CR6       0.000     -8.882   -0.847    1.722
 TTC           O26    O    OH1       0.000     -9.926   -0.995    2.579
 TTC           H261   H    H         0.000    -10.242   -0.125    2.854
 TTC           C3     C    CR16      0.000     -9.124   -0.755    0.347
 TTC           H31    H    H         0.000    -10.141   -0.805   -0.019
 TTC           C4     C    CR16      0.000     -8.101   -0.604   -0.535
 TTC           H41    H    H         0.000     -8.306   -0.534   -1.597
 TTC           C5     C    CR66      0.000     -6.775   -0.539   -0.066
 TTC           N10    N    NRD6      0.000     -5.757   -0.390   -0.914
 TTC           C9     C    CR56      0.000     -4.506   -0.325   -0.487
 TTC           C13    C    CR56      0.000     -3.234   -0.161   -1.228
 TTC           C17    C    CR16      0.000     -2.998   -0.030   -2.579
 TTC           H171   H    H         0.000     -3.828   -0.039   -3.274
 TTC           C16    C    CR6       0.000     -1.689    0.116   -3.058
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 TTC      O18    n/a    C14    START
 TTC      C14    O18    N12    .
 TTC      C15    C14    C19    .
 TTC      C19    C15    O22    .
 TTC      H191   C19    .      .
 TTC      H192   C19    .      .
 TTC      O22    C19    C20    .
 TTC      C20    O22    C21    .
 TTC      O23    C20    .      .
 TTC      C21    C20    C25    .
 TTC      O24    C21    H241   .
 TTC      H241   O24    .      .
 TTC      C25    C21    C31    .
 TTC      H251   C25    .      .
 TTC      H252   C25    .      .
 TTC      C31    C25    H311   .
 TTC      H313   C31    .      .
 TTC      H312   C31    .      .
 TTC      H311   C31    .      .
 TTC      N12    C14    C11    .
 TTC      C11    N12    C8     .
 TTC      H111   C11    .      .
 TTC      H112   C11    .      .
 TTC      C8     C11    C7     .
 TTC      C7     C8     C6     .
 TTC      H71    C7     .      .
 TTC      C6     C7     C1     .
 TTC      C1     C6     C2     .
 TTC      C27    C1     N28    .
 TTC      H271   C27    .      .
 TTC      H272   C27    .      .
 TTC      N28    C27    C29    .
 TTC      C30    N28    H301   .
 TTC      H303   C30    .      .
 TTC      H302   C30    .      .
 TTC      H301   C30    .      .
 TTC      C29    N28    H291   .
 TTC      H293   C29    .      .
 TTC      H292   C29    .      .
 TTC      H291   C29    .      .
 TTC      C2     C1     C3     .
 TTC      O26    C2     H261   .
 TTC      H261   O26    .      .
 TTC      C3     C2     C4     .
 TTC      H31    C3     .      .
 TTC      C4     C3     C5     .
 TTC      H41    C4     .      .
 TTC      C5     C4     N10    .
 TTC      N10    C5     C9     .
 TTC      C9     N10    C13    .
 TTC      C13    C9     C17    .
 TTC      C17    C13    C16    .
 TTC      H171   C17    .      .
 TTC      C16    C17    .      END
 TTC      C21    C16    .    ADD
 TTC      C16    C15    .    ADD
 TTC      C13    N12    .    ADD
 TTC      C9     C8     .    ADD
 TTC      C5     C6     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 TTC      C31    C25       single      1.513    0.020
 TTC      C25    C21       single      1.524    0.020
 TTC      H251   C25       single      1.092    0.020
 TTC      H252   C25       single      1.092    0.020
 TTC      H311   C31       single      1.059    0.020
 TTC      H312   C31       single      1.059    0.020
 TTC      H313   C31       single      1.059    0.020
 TTC      O24    C21       single      1.432    0.020
 TTC      C21    C16       single      1.500    0.020
 TTC      C21    C20       single      1.507    0.020
 TTC      H241   O24       single      0.967    0.020
 TTC      C16    C15       double      1.487    0.020
 TTC      C16    C17       single      1.390    0.020
 TTC      O23    C20       deloc       1.220    0.020
 TTC      C20    O22       deloc       1.454    0.020
 TTC      C15    C14       single      1.487    0.020
 TTC      C19    C15       single      1.511    0.020
 TTC      C17    C13       double      1.390    0.020
 TTC      H171   C17       single      1.083    0.020
 TTC      O22    C19       single      1.426    0.020
 TTC      C14    O18       double      1.250    0.020
 TTC      N12    C14       single      1.337    0.020
 TTC      H191   C19       single      1.092    0.020
 TTC      H192   C19       single      1.092    0.020
 TTC      C13    N12       single      1.337    0.020
 TTC      C13    C9        single      1.490    0.020
 TTC      C11    N12       single      1.462    0.020
 TTC      C9     C8        double      1.490    0.020
 TTC      C9     N10       single      1.355    0.020
 TTC      C8     C11       single      1.457    0.020
 TTC      H111   C11       single      1.092    0.020
 TTC      H112   C11       single      1.092    0.020
 TTC      C7     C8        single      1.390    0.020
 TTC      N10    C5        double      1.350    0.020
 TTC      C6     C7        double      1.390    0.020
 TTC      H71    C7        single      1.083    0.020
 TTC      C5     C6        single      1.490    0.020
 TTC      C5     C4        single      1.390    0.020
 TTC      C1     C6        single      1.490    0.020
 TTC      C4     C3        double      1.390    0.020
 TTC      H41    C4        single      1.083    0.020
 TTC      C2     C1        double      1.487    0.020
 TTC      C27    C1        single      1.511    0.020
 TTC      C3     C2        single      1.390    0.020
 TTC      H31    C3        single      1.083    0.020
 TTC      O26    C2        single      1.362    0.020
 TTC      N28    C27       single      1.469    0.020
 TTC      H271   C27       single      1.092    0.020
 TTC      H272   C27       single      1.092    0.020
 TTC      C29    N28       single      1.469    0.020
 TTC      C30    N28       single      1.469    0.020
 TTC      H291   C29       single      1.059    0.020
 TTC      H292   C29       single      1.059    0.020
 TTC      H293   C29       single      1.059    0.020
 TTC      H301   C30       single      1.059    0.020
 TTC      H302   C30       single      1.059    0.020
 TTC      H303   C30       single      1.059    0.020
 TTC      H261   O26       single      0.967    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 TTC      O18    C14    C15     120.000    3.000
 TTC      O18    C14    N12     120.000    3.000
 TTC      C15    C14    N12     120.000    3.000
 TTC      C14    C15    C19     120.000    3.000
 TTC      C14    C15    C16     120.000    3.000
 TTC      C19    C15    C16     120.000    3.000
 TTC      C15    C19    H191    109.470    3.000
 TTC      C15    C19    H192    109.470    3.000
 TTC      C15    C19    O22     109.470    3.000
 TTC      H191   C19    H192    107.900    3.000
 TTC      H191   C19    O22     109.470    3.000
 TTC      H192   C19    O22     109.470    3.000
 TTC      C19    O22    C20     120.000    3.000
 TTC      O22    C20    O23     119.000    3.000
 TTC      O22    C20    C21     120.000    3.000
 TTC      O23    C20    C21     120.500    3.000
 TTC      C20    C21    O24     109.470    3.000
 TTC      C20    C21    C25     109.470    3.000
 TTC      C20    C21    C16     109.500    3.000
 TTC      O24    C21    C25     109.470    3.000
 TTC      O24    C21    C16     109.500    3.000
 TTC      C25    C21    C16     109.500    3.000
 TTC      C21    O24    H241    109.470    3.000
 TTC      C21    C25    H251    109.470    3.000
 TTC      C21    C25    H252    109.470    3.000
 TTC      C21    C25    C31     111.000    3.000
 TTC      H251   C25    H252    107.900    3.000
 TTC      H251   C25    C31     109.470    3.000
 TTC      H252   C25    C31     109.470    3.000
 TTC      C25    C31    H313    109.470    3.000
 TTC      C25    C31    H312    109.470    3.000
 TTC      C25    C31    H311    109.470    3.000
 TTC      H313   C31    H312    109.470    3.000
 TTC      H313   C31    H311    109.470    3.000
 TTC      H312   C31    H311    109.470    3.000
 TTC      C14    N12    C11     120.000    3.000
 TTC      C14    N12    C13     120.000    3.000
 TTC      C11    N12    C13     120.000    3.000
 TTC      N12    C11    H111    109.500    3.000
 TTC      N12    C11    H112    109.500    3.000
 TTC      N12    C11    C8      109.500    3.000
 TTC      H111   C11    H112    107.900    3.000
 TTC      H111   C11    C8      109.500    3.000
 TTC      H112   C11    C8      109.500    3.000
 TTC      C11    C8     C7      120.000    3.000
 TTC      C11    C8     C9      120.000    3.000
 TTC      C7     C8     C9      120.000    3.000
 TTC      C8     C7     H71     120.000    3.000
 TTC      C8     C7     C6      120.000    3.000
 TTC      H71    C7     C6      120.000    3.000
 TTC      C7     C6     C1      120.000    3.000
 TTC      C7     C6     C5      120.000    3.000
 TTC      C1     C6     C5      120.000    3.000
 TTC      C6     C1     C27     120.000    3.000
 TTC      C6     C1     C2      120.000    3.000
 TTC      C27    C1     C2      120.000    3.000
 TTC      C1     C27    H271    109.470    3.000
 TTC      C1     C27    H272    109.470    3.000
 TTC      C1     C27    N28     109.500    3.000
 TTC      H271   C27    H272    107.900    3.000
 TTC      H271   C27    N28     109.470    3.000
 TTC      H272   C27    N28     109.470    3.000
 TTC      C27    N28    C30     109.470    3.000
 TTC      C27    N28    C29     109.470    3.000
 TTC      C30    N28    C29     109.470    3.000
 TTC      N28    C30    H303    109.470    3.000
 TTC      N28    C30    H302    109.470    3.000
 TTC      N28    C30    H301    109.470    3.000
 TTC      H303   C30    H302    109.470    3.000
 TTC      H303   C30    H301    109.470    3.000
 TTC      H302   C30    H301    109.470    3.000
 TTC      N28    C29    H293    109.470    3.000
 TTC      N28    C29    H292    109.470    3.000
 TTC      N28    C29    H291    109.470    3.000
 TTC      H293   C29    H292    109.470    3.000
 TTC      H293   C29    H291    109.470    3.000
 TTC      H292   C29    H291    109.470    3.000
 TTC      C1     C2     O26     120.000    3.000
 TTC      C1     C2     C3      120.000    3.000
 TTC      O26    C2     C3      120.000    3.000
 TTC      C2     O26    H261    109.470    3.000
 TTC      C2     C3     H31     120.000    3.000
 TTC      C2     C3     C4      120.000    3.000
 TTC      H31    C3     C4      120.000    3.000
 TTC      C3     C4     H41     120.000    3.000
 TTC      C3     C4     C5      120.000    3.000
 TTC      H41    C4     C5      120.000    3.000
 TTC      C4     C5     N10     120.000    3.000
 TTC      C4     C5     C6      120.000    3.000
 TTC      N10    C5     C6      120.000    3.000
 TTC      C5     N10    C9      120.000    3.000
 TTC      N10    C9     C13     120.000    3.000
 TTC      N10    C9     C8      120.000    3.000
 TTC      C13    C9     C8      120.000    3.000
 TTC      C9     C13    C17     120.000    3.000
 TTC      C9     C13    N12     120.000    3.000
 TTC      C17    C13    N12     120.000    3.000
 TTC      C13    C17    H171    120.000    3.000
 TTC      C13    C17    C16     120.000    3.000
 TTC      H171   C17    C16     120.000    3.000
 TTC      C17    C16    C21     120.000    3.000
 TTC      C17    C16    C15     120.000    3.000
 TTC      C21    C16    C15     120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 TTC      CONST_1  O18    C14    C15    C19        0.000    0.000   0
 TTC      var_1    C14    C15    C19    O22      180.000   20.000   2
 TTC      var_2    C15    C19    O22    C20      -30.000   20.000   1
 TTC      var_3    C19    O22    C20    C21       60.000   20.000   1
 TTC      var_4    O22    C20    C21    C25       90.000   20.000   1
 TTC      var_5    C20    C21    C16    C17      180.000   20.000   1
 TTC      var_6    C20    C21    O24    H241     -59.955   20.000   1
 TTC      var_7    C20    C21    C25    C31       60.066   20.000   1
 TTC      var_8    C21    C25    C31    H311    -179.986   20.000   3
 TTC      CONST_2  O18    C14    N12    C11        0.000    0.000   0
 TTC      CONST_3  C14    N12    C11    C8       180.000    0.000   0
 TTC      CONST_4  N12    C11    C8     C7       180.000    0.000   0
 TTC      CONST_5  C11    C8     C7     C6       180.000    0.000   0
 TTC      CONST_6  C8     C7     C6     C1       180.000    0.000   0
 TTC      CONST_7  C7     C6     C1     C2       180.000    0.000   0
 TTC      var_9    C6     C1     C27    N28       89.978   20.000   2
 TTC      var_10   C1     C27    N28    C29     -179.970   20.000   1
 TTC      var_11   C27    N28    C30    H301     179.965   20.000   1
 TTC      var_12   C27    N28    C29    H291    -179.993   20.000   1
 TTC      CONST_8  C6     C1     C2     C3         0.000    0.000   0
 TTC      var_13   C1     C2     O26    H261      89.924   20.000   1
 TTC      CONST_9  C1     C2     C3     C4         0.000    0.000   0
 TTC      CONST_10 C2     C3     C4     C5         0.000    0.000   0
 TTC      CONST_11 C3     C4     C5     N10      180.000    0.000   0
 TTC      CONST_12 C4     C5     C6     C7       180.000    0.000   0
 TTC      CONST_13 C4     C5     N10    C9       180.000    0.000   0
 TTC      CONST_14 C5     N10    C9     C13      180.000    0.000   0
 TTC      CONST_15 N10    C9     C8     C11      180.000    0.000   0
 TTC      CONST_16 N10    C9     C13    C17        0.000    0.000   0
 TTC      CONST_17 C9     C13    N12    C14      180.000    0.000   0
 TTC      CONST_18 C9     C13    C17    C16      180.000    0.000   0
 TTC      CONST_19 C13    C17    C16    C21      180.000    0.000   0
 TTC      CONST_20 C17    C16    C15    C14        0.000    0.000   0
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 TTC      chir_01  C21    C25    O24    C16       positiv
 TTC      chir_02  N28    C27    C29    C30       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 TTC      plan-1    C16       0.020
 TTC      plan-1    C21       0.020
 TTC      plan-1    C15       0.020
 TTC      plan-1    C17       0.020
 TTC      plan-1    C14       0.020
 TTC      plan-1    C19       0.020
 TTC      plan-1    C13       0.020
 TTC      plan-1    H171      0.020
 TTC      plan-1    O18       0.020
 TTC      plan-1    N12       0.020
 TTC      plan-1    C9        0.020
 TTC      plan-1    C11       0.020
 TTC      plan-1    C8        0.020
 TTC      plan-1    N10       0.020
 TTC      plan-1    C7        0.020
 TTC      plan-1    C5        0.020
 TTC      plan-1    C6        0.020
 TTC      plan-1    H71       0.020
 TTC      plan-1    C4        0.020
 TTC      plan-1    C1        0.020
 TTC      plan-1    C3        0.020
 TTC      plan-1    C2        0.020
 TTC      plan-1    H41       0.020
 TTC      plan-1    C27       0.020
 TTC      plan-1    H31       0.020
 TTC      plan-1    O26       0.020
 TTC      plan-2    C20       0.020
 TTC      plan-2    C21       0.020
 TTC      plan-2    O23       0.020
 TTC      plan-2    O22       0.020
# ------------------------------------------------------