File: V36.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (261 lines) | stat: -rw-r--r-- 11,229 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
V36      V36 'L-1-(4-CHLOROPHENYL)-2-(ACETAMIDO)ET' non-polymer        31  17 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_V36
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 V36           CL4    CL   CL        0.000      0.000    0.000    0.000
 V36           C4     C    CR6       0.000     -1.696   -0.209   -0.303
 V36           C3     C    CR16      0.000     -2.305   -1.421   -0.028
 V36           H3     H    H         0.000     -1.723   -2.239    0.377
 V36           C2     C    CR16      0.000     -3.655   -1.587   -0.270
 V36           H2     H    H         0.000     -4.131   -2.536   -0.055
 V36           C5     C    CR16      0.000     -2.441    0.836   -0.821
 V36           H5     H    H         0.000     -1.967    1.787   -1.033
 V36           C6     C    CR16      0.000     -3.790    0.667   -1.068
 V36           H6     H    H         0.000     -4.371    1.483   -1.480
 V36           C1     C    CR6       0.000     -4.399   -0.542   -0.787
 V36           C7     C    CH2       0.000     -5.871   -0.723   -1.051
 V36           H71    H    H         0.000     -6.069   -1.768   -1.299
 V36           H72    H    H         0.000     -6.170   -0.088   -1.887
 V36           C8     C    CH1       0.000     -6.665   -0.333    0.197
 V36           H8     H    H         0.000     -6.362   -0.972    1.038
 V36           B      B    B        -1.000     -6.373    1.196    0.558
 V36           O3B    O    OH1       0.000     -6.749    1.991   -0.489
 V36           HOB3   H    H         0.000     -6.326    1.842   -1.317
 V36           O2B    O    OH1       0.000     -5.038    1.360    0.797
 V36           HOB2   H    H         0.000     -4.744    2.226    1.021
 V36           O1B    O    OH1       0.000     -7.082    1.544    1.673
 V36           HOB1   H    H         0.000     -6.907    1.062    2.463
 V36           N      N    NH1       0.000     -8.096   -0.509   -0.059
 V36           HN     H    H         0.000     -8.498   -0.180   -0.925
 V36           C      C    C         0.000     -8.877   -1.110    0.862
 V36           O      O    O         0.000     -8.394   -1.503    1.902
 V36           C9     C    CH3       0.000    -10.349   -1.290    0.597
 V36           H93    H    H         0.000    -10.513   -1.391   -0.445
 V36           H92    H    H         0.000    -10.694   -2.161    1.093
 V36           H91    H    H         0.000    -10.880   -0.447    0.957
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 V36      CL4    n/a    C4     START
 V36      C4     CL4    C5     .
 V36      C3     C4     C2     .
 V36      H3     C3     .      .
 V36      C2     C3     H2     .
 V36      H2     C2     .      .
 V36      C5     C4     C6     .
 V36      H5     C5     .      .
 V36      C6     C5     C1     .
 V36      H6     C6     .      .
 V36      C1     C6     C7     .
 V36      C7     C1     C8     .
 V36      H71    C7     .      .
 V36      H72    C7     .      .
 V36      C8     C7     N      .
 V36      H8     C8     .      .
 V36      B      C8     O1B    .
 V36      O3B    B      HOB3   .
 V36      HOB3   O3B    .      .
 V36      O2B    B      HOB2   .
 V36      HOB2   O2B    .      .
 V36      O1B    B      HOB1   .
 V36      HOB1   O1B    .      .
 V36      N      C8     C      .
 V36      HN     N      .      .
 V36      C      N      C9     .
 V36      O      C      .      .
 V36      C9     C      H91    .
 V36      H93    C9     .      .
 V36      H92    C9     .      .
 V36      H91    C9     .      END
 V36      C1     C2     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 V36      C1     C2        double      1.390    0.020
 V36      C1     C6        single      1.390    0.020
 V36      C7     C1        single      1.511    0.020
 V36      C2     C3        single      1.390    0.020
 V36      H2     C2        single      1.083    0.020
 V36      C3     C4        double      1.390    0.020
 V36      H3     C3        single      1.083    0.020
 V36      C5     C4        single      1.390    0.020
 V36      C4     CL4       single      1.795    0.020
 V36      C6     C5        double      1.390    0.020
 V36      H5     C5        single      1.083    0.020
 V36      H6     C6        single      1.083    0.020
 V36      C8     C7        single      1.524    0.020
 V36      H71    C7        single      1.092    0.020
 V36      H72    C7        single      1.092    0.020
 V36      N      C8        single      1.450    0.020
 V36      B      C8        single      1.600    0.020
 V36      H8     C8        single      1.099    0.020
 V36      C9     C         single      1.500    0.020
 V36      H91    C9        single      1.059    0.020
 V36      H92    C9        single      1.059    0.020
 V36      H93    C9        single      1.059    0.020
 V36      C      N         single      1.330    0.020
 V36      O      C         double      1.220    0.020
 V36      HN     N         single      1.010    0.020
 V36      O1B    B         single      1.535    0.020
 V36      HOB1   O1B       single      0.967    0.020
 V36      O2B    B         single      1.535    0.020
 V36      HOB2   O2B       single      0.967    0.020
 V36      O3B    B         single      1.535    0.020
 V36      HOB3   O3B       single      0.967    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 V36      CL4    C4     C3      120.000    3.000
 V36      CL4    C4     C5      120.000    3.000
 V36      C3     C4     C5      120.000    3.000
 V36      C4     C3     H3      120.000    3.000
 V36      C4     C3     C2      120.000    3.000
 V36      H3     C3     C2      120.000    3.000
 V36      C3     C2     H2      120.000    3.000
 V36      C3     C2     C1      120.000    3.000
 V36      H2     C2     C1      120.000    3.000
 V36      C4     C5     H5      120.000    3.000
 V36      C4     C5     C6      120.000    3.000
 V36      H5     C5     C6      120.000    3.000
 V36      C5     C6     H6      120.000    3.000
 V36      C5     C6     C1      120.000    3.000
 V36      H6     C6     C1      120.000    3.000
 V36      C6     C1     C7      120.000    3.000
 V36      C6     C1     C2      120.000    3.000
 V36      C7     C1     C2      120.000    3.000
 V36      C1     C7     H71     109.470    3.000
 V36      C1     C7     H72     109.470    3.000
 V36      C1     C7     C8      109.470    3.000
 V36      H71    C7     H72     107.900    3.000
 V36      H71    C7     C8      109.470    3.000
 V36      H72    C7     C8      109.470    3.000
 V36      C7     C8     H8      108.340    3.000
 V36      C7     C8     B       109.470    3.000
 V36      C7     C8     N       110.000    3.000
 V36      H8     C8     B       109.470    3.000
 V36      H8     C8     N       108.550    3.000
 V36      B      C8     N       109.500    3.000
 V36      C8     B      O3B     120.000    3.000
 V36      C8     B      O2B     120.000    3.000
 V36      C8     B      O1B     120.000    3.000
 V36      O3B    B      O2B     120.000    3.000
 V36      O3B    B      O1B     120.000    3.000
 V36      O2B    B      O1B     120.000    3.000
 V36      B      O3B    HOB3    120.000    3.000
 V36      B      O2B    HOB2    120.000    3.000
 V36      B      O1B    HOB1    120.000    3.000
 V36      C8     N      HN      118.500    3.000
 V36      C8     N      C       121.500    3.000
 V36      HN     N      C       120.000    3.000
 V36      N      C      O       123.000    3.000
 V36      N      C      C9      116.500    3.000
 V36      O      C      C9      123.000    3.000
 V36      C      C9     H93     109.470    3.000
 V36      C      C9     H92     109.470    3.000
 V36      C      C9     H91     109.470    3.000
 V36      H93    C9     H92     109.470    3.000
 V36      H93    C9     H91     109.470    3.000
 V36      H92    C9     H91     109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 V36      CONST_1  CL4    C4     C3     C2       180.000    0.000   0
 V36      CONST_2  C4     C3     C2     C1         0.000    0.000   0
 V36      CONST_3  CL4    C4     C5     C6       180.000    0.000   0
 V36      CONST_4  C4     C5     C6     C1         0.000    0.000   0
 V36      CONST_5  C5     C6     C1     C7       180.000    0.000   0
 V36      CONST_6  C6     C1     C2     C3         0.000    0.000   0
 V36      var_1    C6     C1     C7     C8       -90.275   20.000   2
 V36      var_2    C1     C7     C8     N       -179.992   20.000   3
 V36      var_3    C7     C8     B      O1B     -179.952   20.000   1
 V36      var_4    C8     B      O3B    HOB3     -59.987   20.000   1
 V36      var_5    C8     B      O2B    HOB2    -179.975   20.000   1
 V36      var_6    C8     B      O1B    HOB1      59.955   20.000   1
 V36      var_7    C7     C8     N      C        134.982   20.000   3
 V36      CONST_7  C8     N      C      C9       180.000    0.000   0
 V36      var_8    N      C      C9     H91      -89.997   20.000   1
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 V36      chir_01  C8     C7     N      B         positiv
 V36      chir_02  B      C8     O1B    O2B       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 V36      plan-1    C1        0.020
 V36      plan-1    C2        0.020
 V36      plan-1    C6        0.020
 V36      plan-1    C7        0.020
 V36      plan-1    C3        0.020
 V36      plan-1    C4        0.020
 V36      plan-1    C5        0.020
 V36      plan-1    H2        0.020
 V36      plan-1    H3        0.020
 V36      plan-1    CL4       0.020
 V36      plan-1    H5        0.020
 V36      plan-1    H6        0.020
 V36      plan-2    C         0.020
 V36      plan-2    C9        0.020
 V36      plan-2    N         0.020
 V36      plan-2    O         0.020
 V36      plan-2    HN        0.020
 V36      plan-3    N         0.020
 V36      plan-3    C8        0.020
 V36      plan-3    C         0.020
 V36      plan-3    HN        0.020
# ------------------------------------------------------