File: W11.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (353 lines) | stat: -rw-r--r-- 16,027 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
W11      W11 '3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXA' non-polymer        45  27 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_W11
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 W11           F3     F    F         0.000      0.000    0.000    0.000
 W11           CM4    C    CT        0.000     -0.163   -0.918    1.043
 W11           F1     F    F         0.000      0.803   -0.683    2.026
 W11           F2     F    F         0.000     -0.018   -2.217    0.549
 W11           C3A    C    CR5       0.000     -1.537   -0.758    1.641
 W11           O1A    O    O2        0.000     -1.819   -0.441    2.909
 W11           N1A    N    NRD5      0.000     -3.021   -0.393    3.067
 W11           N3A    N    NRD5      0.000     -2.680   -0.908    1.019
 W11           C2A    C    CR5       0.000     -3.634   -0.664    1.944
 W11           C4B    C    CR6       0.000     -5.101   -0.705    1.729
 W11           C3B    C    CR16      0.000     -5.969   -0.436    2.785
 W11           H3B    H    H         0.000     -5.574   -0.196    3.764
 W11           C2B    C    CR6       0.000     -7.331   -0.474    2.582
 W11           CM2    C    CH3       0.000     -8.271   -0.183    3.724
 W11           HM23   H    H         0.000     -7.812    0.494    4.396
 W11           HM22   H    H         0.000     -9.163    0.245    3.346
 W11           HM21   H    H         0.000     -8.500   -1.084    4.231
 W11           C5B    C    CR16      0.000     -5.613   -1.013    0.471
 W11           H5B    H    H         0.000     -4.941   -1.219   -0.353
 W11           C6B    C    CR6       0.000     -6.978   -1.055    0.275
 W11           CM6    C    CH3       0.000     -7.532   -1.389   -1.086
 W11           HM63   H    H         0.000     -8.464   -0.903   -1.217
 W11           HM62   H    H         0.000     -6.856   -1.061   -1.833
 W11           HM61   H    H         0.000     -7.666   -2.436   -1.166
 W11           C1B    C    CR6       0.000     -7.840   -0.782    1.327
 W11           O1B    O    O2        0.000     -9.183   -0.819    1.130
 W11           C3C    C    CH2       0.000     -9.581    0.497    0.741
 W11           H3C1   H    H         0.000     -9.062    0.777   -0.179
 W11           H3C2   H    H         0.000     -9.323    1.204    1.532
 W11           C2C    C    CH2       0.000    -11.092    0.523    0.503
 W11           H2C1   H    H         0.000    -11.610    0.243    1.423
 W11           H2C2   H    H         0.000    -11.348   -0.185   -0.287
 W11           C1C    C    CH2       0.000    -11.518    1.932    0.086
 W11           H1C1   H    H         0.000    -10.998    2.211   -0.833
 W11           H1C2   H    H         0.000    -11.261    2.638    0.878
 W11           C5     C    CR5       0.000    -13.006    1.957   -0.148
 W11           O1     O    O2        0.000    -13.640    1.714   -1.305
 W11           C4     C    CR15      0.000    -13.967    2.231    0.765
 W11           H41    H    H         0.000    -13.841    2.477    1.812
 W11           C3     C    CR5       0.000    -15.174    2.123    0.037
 W11           N2     N    NRD5      0.000    -14.840    1.805   -1.181
 W11           CM3    C    CH3       0.000    -16.570    2.327    0.566
 W11           HM33   H    H         0.000    -17.246    1.719    0.022
 W11           HM32   H    H         0.000    -16.602    2.061    1.590
 W11           HM31   H    H         0.000    -16.844    3.344    0.456
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 W11      F3     n/a    CM4    START
 W11      CM4    F3     C3A    .
 W11      F1     CM4    .      .
 W11      F2     CM4    .      .
 W11      C3A    CM4    N3A    .
 W11      O1A    C3A    N1A    .
 W11      N1A    O1A    .      .
 W11      N3A    C3A    C2A    .
 W11      C2A    N3A    C4B    .
 W11      C4B    C2A    C5B    .
 W11      C3B    C4B    C2B    .
 W11      H3B    C3B    .      .
 W11      C2B    C3B    CM2    .
 W11      CM2    C2B    HM21   .
 W11      HM23   CM2    .      .
 W11      HM22   CM2    .      .
 W11      HM21   CM2    .      .
 W11      C5B    C4B    C6B    .
 W11      H5B    C5B    .      .
 W11      C6B    C5B    C1B    .
 W11      CM6    C6B    HM61   .
 W11      HM63   CM6    .      .
 W11      HM62   CM6    .      .
 W11      HM61   CM6    .      .
 W11      C1B    C6B    O1B    .
 W11      O1B    C1B    C3C    .
 W11      C3C    O1B    C2C    .
 W11      H3C1   C3C    .      .
 W11      H3C2   C3C    .      .
 W11      C2C    C3C    C1C    .
 W11      H2C1   C2C    .      .
 W11      H2C2   C2C    .      .
 W11      C1C    C2C    C5     .
 W11      H1C1   C1C    .      .
 W11      H1C2   C1C    .      .
 W11      C5     C1C    C4     .
 W11      O1     C5     .      .
 W11      C4     C5     C3     .
 W11      H41    C4     .      .
 W11      C3     C4     CM3    .
 W11      N2     C3     .      .
 W11      CM3    C3     HM31   .
 W11      HM33   CM3    .      .
 W11      HM32   CM3    .      .
 W11      HM31   CM3    .      END
 W11      O1     N2     .    ADD
 W11      C1B    C2B    .    ADD
 W11      C2A    N1A    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 W11      O1     N2        single      1.337    0.020
 W11      O1     C5        single      1.370    0.020
 W11      N2     C3        double      1.350    0.020
 W11      CM3    C3        single      1.506    0.020
 W11      C3     C4        single      1.387    0.020
 W11      HM31   CM3       single      1.059    0.020
 W11      HM32   CM3       single      1.059    0.020
 W11      HM33   CM3       single      1.059    0.020
 W11      C4     C5        double      1.387    0.020
 W11      H41    C4        single      1.083    0.020
 W11      C5     C1C       single      1.510    0.020
 W11      C1C    C2C       single      1.524    0.020
 W11      H1C1   C1C       single      1.092    0.020
 W11      H1C2   C1C       single      1.092    0.020
 W11      C2C    C3C       single      1.524    0.020
 W11      H2C1   C2C       single      1.092    0.020
 W11      H2C2   C2C       single      1.092    0.020
 W11      C3C    O1B       single      1.426    0.020
 W11      H3C1   C3C       single      1.092    0.020
 W11      H3C2   C3C       single      1.092    0.020
 W11      O1B    C1B       single      1.370    0.020
 W11      C1B    C2B       double      1.487    0.020
 W11      C1B    C6B       single      1.487    0.020
 W11      CM2    C2B       single      1.506    0.020
 W11      C2B    C3B       single      1.390    0.020
 W11      HM21   CM2       single      1.059    0.020
 W11      HM22   CM2       single      1.059    0.020
 W11      HM23   CM2       single      1.059    0.020
 W11      C3B    C4B       double      1.390    0.020
 W11      H3B    C3B       single      1.083    0.020
 W11      C5B    C4B       single      1.390    0.020
 W11      C4B    C2A       single      1.490    0.020
 W11      C6B    C5B       double      1.390    0.020
 W11      H5B    C5B       single      1.083    0.020
 W11      CM6    C6B       single      1.506    0.020
 W11      HM61   CM6       single      1.059    0.020
 W11      HM62   CM6       single      1.059    0.020
 W11      HM63   CM6       single      1.059    0.020
 W11      C2A    N1A       double      1.350    0.020
 W11      C2A    N3A       single      1.350    0.020
 W11      N1A    O1A       single      1.337    0.020
 W11      N3A    C3A       double      1.350    0.020
 W11      C3A    CM4       single      1.500    0.020
 W11      O1A    C3A       single      1.370    0.020
 W11      F1     CM4       single      1.320    0.020
 W11      F2     CM4       single      1.320    0.020
 W11      CM4    F3        single      1.320    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 W11      F3     CM4    F1      109.470    3.000
 W11      F3     CM4    F2      109.470    3.000
 W11      F3     CM4    C3A     109.500    3.000
 W11      F1     CM4    F2      109.470    3.000
 W11      F1     CM4    C3A     109.500    3.000
 W11      F2     CM4    C3A     109.500    3.000
 W11      CM4    C3A    O1A     108.000    3.000
 W11      CM4    C3A    N3A     108.000    3.000
 W11      O1A    C3A    N3A     108.000    3.000
 W11      C3A    O1A    N1A     120.000    3.000
 W11      O1A    N1A    C2A     108.000    3.000
 W11      C3A    N3A    C2A     108.000    3.000
 W11      N3A    C2A    C4B     126.000    3.000
 W11      N3A    C2A    N1A     108.000    3.000
 W11      C4B    C2A    N1A     126.000    3.000
 W11      C2A    C4B    C3B     120.000    3.000
 W11      C2A    C4B    C5B     120.000    3.000
 W11      C3B    C4B    C5B     120.000    3.000
 W11      C4B    C3B    H3B     120.000    3.000
 W11      C4B    C3B    C2B     120.000    3.000
 W11      H3B    C3B    C2B     120.000    3.000
 W11      C3B    C2B    CM2     120.000    3.000
 W11      C3B    C2B    C1B     120.000    3.000
 W11      CM2    C2B    C1B     120.000    3.000
 W11      C2B    CM2    HM23    109.470    3.000
 W11      C2B    CM2    HM22    109.470    3.000
 W11      C2B    CM2    HM21    109.470    3.000
 W11      HM23   CM2    HM22    109.470    3.000
 W11      HM23   CM2    HM21    109.470    3.000
 W11      HM22   CM2    HM21    109.470    3.000
 W11      C4B    C5B    H5B     120.000    3.000
 W11      C4B    C5B    C6B     120.000    3.000
 W11      H5B    C5B    C6B     120.000    3.000
 W11      C5B    C6B    CM6     120.000    3.000
 W11      C5B    C6B    C1B     120.000    3.000
 W11      CM6    C6B    C1B     120.000    3.000
 W11      C6B    CM6    HM63    109.470    3.000
 W11      C6B    CM6    HM62    109.470    3.000
 W11      C6B    CM6    HM61    109.470    3.000
 W11      HM63   CM6    HM62    109.470    3.000
 W11      HM63   CM6    HM61    109.470    3.000
 W11      HM62   CM6    HM61    109.470    3.000
 W11      C6B    C1B    O1B     120.000    3.000
 W11      C6B    C1B    C2B     120.000    3.000
 W11      O1B    C1B    C2B     120.000    3.000
 W11      C1B    O1B    C3C     120.000    3.000
 W11      O1B    C3C    H3C1    109.470    3.000
 W11      O1B    C3C    H3C2    109.470    3.000
 W11      O1B    C3C    C2C     109.470    3.000
 W11      H3C1   C3C    H3C2    107.900    3.000
 W11      H3C1   C3C    C2C     109.470    3.000
 W11      H3C2   C3C    C2C     109.470    3.000
 W11      C3C    C2C    H2C1    109.470    3.000
 W11      C3C    C2C    H2C2    109.470    3.000
 W11      C3C    C2C    C1C     111.000    3.000
 W11      H2C1   C2C    H2C2    107.900    3.000
 W11      H2C1   C2C    C1C     109.470    3.000
 W11      H2C2   C2C    C1C     109.470    3.000
 W11      C2C    C1C    H1C1    109.470    3.000
 W11      C2C    C1C    H1C2    109.470    3.000
 W11      C2C    C1C    C5      109.470    3.000
 W11      H1C1   C1C    H1C2    107.900    3.000
 W11      H1C1   C1C    C5      109.470    3.000
 W11      H1C2   C1C    C5      109.470    3.000
 W11      C1C    C5     O1      126.000    3.000
 W11      C1C    C5     C4      126.000    3.000
 W11      O1     C5     C4      108.000    3.000
 W11      C5     O1     N2      120.000    3.000
 W11      C5     C4     H41     126.000    3.000
 W11      C5     C4     C3      108.000    3.000
 W11      H41    C4     C3      126.000    3.000
 W11      C4     C3     N2      108.000    3.000
 W11      C4     C3     CM3     108.000    3.000
 W11      N2     C3     CM3     126.000    3.000
 W11      C3     N2     O1      108.000    3.000
 W11      C3     CM3    HM33    109.470    3.000
 W11      C3     CM3    HM32    109.470    3.000
 W11      C3     CM3    HM31    109.470    3.000
 W11      HM33   CM3    HM32    109.470    3.000
 W11      HM33   CM3    HM31    109.470    3.000
 W11      HM32   CM3    HM31    109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 W11      var_1    F3     CM4    C3A    N3A       60.317   20.000   1
 W11      CONST_1  CM4    C3A    O1A    N1A      180.000    0.000   0
 W11      CONST_2  C3A    O1A    N1A    C2A        0.000    0.000   0
 W11      CONST_3  CM4    C3A    N3A    C2A      180.000    0.000   0
 W11      CONST_4  C3A    N3A    C2A    C4B      180.000    0.000   0
 W11      CONST_5  N3A    C2A    N1A    O1A        0.000    0.000   0
 W11      var_2    N3A    C2A    C4B    C5B       -0.298   20.000   1
 W11      CONST_6  C2A    C4B    C3B    C2B      180.000    0.000   0
 W11      CONST_7  C4B    C3B    C2B    CM2      180.000    0.000   0
 W11      var_3    C3B    C2B    CM2    HM21     -89.996   20.000   1
 W11      CONST_8  C2A    C4B    C5B    C6B      180.000    0.000   0
 W11      CONST_9  C4B    C5B    C6B    C1B        0.000    0.000   0
 W11      var_4    C5B    C6B    CM6    HM61      89.967   20.000   1
 W11      CONST_10 C5B    C6B    C1B    O1B      180.000    0.000   0
 W11      CONST_11 C6B    C1B    C2B    C3B        0.000    0.000   0
 W11      var_5    C6B    C1B    O1B    C3C      -90.232   20.000   1
 W11      var_6    C1B    O1B    C3C    C2C     -179.917   20.000   1
 W11      var_7    O1B    C3C    C2C    C1C     -179.967   20.000   3
 W11      var_8    C3C    C2C    C1C    C5       179.954   20.000   3
 W11      var_9    C2C    C1C    C5     C4        90.013   20.000   2
 W11      CONST_12 C1C    C5     O1     N2       180.000    0.000   0
 W11      CONST_13 C5     O1     N2     C3         0.000    0.000   0
 W11      CONST_14 C1C    C5     C4     C3       180.000    0.000   0
 W11      CONST_15 C5     C4     C3     CM3      180.000    0.000   0
 W11      CONST_16 C4     C3     N2     O1         0.000    0.000   0
 W11      var_10   C4     C3     CM3    HM31      90.024   20.000   1
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 W11      chir_01  CM4    C3A    F1     F2        negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 W11      plan-1    N2        0.020
 W11      plan-1    O1        0.020
 W11      plan-1    C3        0.020
 W11      plan-1    C4        0.020
 W11      plan-1    C5        0.020
 W11      plan-1    CM3       0.020
 W11      plan-1    H41       0.020
 W11      plan-1    C1C       0.020
 W11      plan-2    C1B       0.020
 W11      plan-2    O1B       0.020
 W11      plan-2    C2B       0.020
 W11      plan-2    C6B       0.020
 W11      plan-2    C3B       0.020
 W11      plan-2    C4B       0.020
 W11      plan-2    C5B       0.020
 W11      plan-2    CM2       0.020
 W11      plan-2    H3B       0.020
 W11      plan-2    C2A       0.020
 W11      plan-2    H5B       0.020
 W11      plan-2    CM6       0.020
 W11      plan-3    C2A       0.020
 W11      plan-3    C4B       0.020
 W11      plan-3    N1A       0.020
 W11      plan-3    N3A       0.020
 W11      plan-3    C3A       0.020
 W11      plan-3    O1A       0.020
 W11      plan-3    CM4       0.020
# ------------------------------------------------------