File: WW2.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (208 lines) | stat: -rw-r--r-- 8,815 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
WW2      WW2 'cyclohexyl (S)-methylphosphonofluori' non-polymer        25  11 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_WW2
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 WW2           O1     O    O         0.000      0.000    0.000    0.000
 WW2           P1     P    P         0.000     -0.755    0.902   -0.897
 WW2           F1     F    F         0.000     -0.895    2.406   -0.183
 WW2           C7     C    CH3       0.000      0.128    1.062   -2.484
 WW2           H7B    H    H         0.000     -0.411    1.708   -3.127
 WW2           H7A    H    H         0.000      1.094    1.462   -2.314
 WW2           H7     H    H         0.000      0.217    0.109   -2.938
 WW2           O2     O    O2        0.000     -2.223    0.295   -1.158
 WW2           C6     C    CH1       0.000     -3.162    0.049   -0.109
 WW2           H6     H    H         0.000     -2.719    0.338    0.854
 WW2           C1     C    CH2       0.000     -3.518   -1.439   -0.081
 WW2           H1A    H    H         0.000     -2.615   -2.026    0.094
 WW2           H1     H    H         0.000     -3.958   -1.726   -1.039
 WW2           C5     C    CH2       0.000     -4.428    0.873   -0.355
 WW2           H5     H    H         0.000     -4.868    0.587   -1.313
 WW2           H5A    H    H         0.000     -4.173    1.935   -0.377
 WW2           C4     C    CH2       0.000     -5.433    0.611    0.768
 WW2           H4     H    H         0.000     -6.336    1.200    0.593
 WW2           H4A    H    H         0.000     -4.992    0.899    1.725
 WW2           C3     C    CH2       0.000     -5.790   -0.877    0.796
 WW2           H3     H    H         0.000     -6.231   -1.164   -0.161
 WW2           H3A    H    H         0.000     -6.509   -1.064    1.597
 WW2           C2     C    CH2       0.000     -4.525   -1.700    1.042
 WW2           H2A    H    H         0.000     -4.780   -2.762    1.064
 WW2           H2     H    H         0.000     -4.085   -1.413    2.000
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 WW2      O1     n/a    P1     START
 WW2      P1     O1     O2     .
 WW2      F1     P1     .      .
 WW2      C7     P1     H7     .
 WW2      H7B    C7     .      .
 WW2      H7A    C7     .      .
 WW2      H7     C7     .      .
 WW2      O2     P1     C6     .
 WW2      C6     O2     C5     .
 WW2      H6     C6     .      .
 WW2      C1     C6     H1     .
 WW2      H1A    C1     .      .
 WW2      H1     C1     .      .
 WW2      C5     C6     C4     .
 WW2      H5     C5     .      .
 WW2      H5A    C5     .      .
 WW2      C4     C5     C3     .
 WW2      H4     C4     .      .
 WW2      H4A    C4     .      .
 WW2      C3     C4     C2     .
 WW2      H3     C3     .      .
 WW2      H3A    C3     .      .
 WW2      C2     C3     H2     .
 WW2      H2A    C2     .      .
 WW2      H2     C2     .      END
 WW2      C1     C2     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 WW2      C1     C2        single      1.524    0.020
 WW2      C1     C6        single      1.524    0.020
 WW2      H1     C1        single      1.092    0.020
 WW2      H1A    C1        single      1.092    0.020
 WW2      F1     P1        single      1.700    0.020
 WW2      P1     O1        double      1.480    0.020
 WW2      O2     P1        single      1.610    0.020
 WW2      C7     P1        single      1.812    0.020
 WW2      C2     C3        single      1.524    0.020
 WW2      H2     C2        single      1.092    0.020
 WW2      H2A    C2        single      1.092    0.020
 WW2      C6     O2        single      1.426    0.020
 WW2      C3     C4        single      1.524    0.020
 WW2      H3     C3        single      1.092    0.020
 WW2      H3A    C3        single      1.092    0.020
 WW2      C4     C5        single      1.524    0.020
 WW2      H4     C4        single      1.092    0.020
 WW2      H4A    C4        single      1.092    0.020
 WW2      C5     C6        single      1.524    0.020
 WW2      H5     C5        single      1.092    0.020
 WW2      H5A    C5        single      1.092    0.020
 WW2      H6     C6        single      1.099    0.020
 WW2      H7     C7        single      1.059    0.020
 WW2      H7A    C7        single      1.059    0.020
 WW2      H7B    C7        single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 WW2      O1     P1     F1      109.500    3.000
 WW2      O1     P1     C7      109.500    3.000
 WW2      O1     P1     O2      109.500    3.000
 WW2      F1     P1     C7      109.500    3.000
 WW2      F1     P1     O2      109.500    3.000
 WW2      C7     P1     O2      109.500    3.000
 WW2      P1     C7     H7B     109.500    3.000
 WW2      P1     C7     H7A     109.500    3.000
 WW2      P1     C7     H7      109.500    3.000
 WW2      H7B    C7     H7A     109.470    3.000
 WW2      H7B    C7     H7      109.470    3.000
 WW2      H7A    C7     H7      109.470    3.000
 WW2      P1     O2     C6      120.500    3.000
 WW2      O2     C6     H6      109.470    3.000
 WW2      O2     C6     C1      109.470    3.000
 WW2      O2     C6     C5      109.470    3.000
 WW2      H6     C6     C1      108.340    3.000
 WW2      H6     C6     C5      108.340    3.000
 WW2      C1     C6     C5      109.470    3.000
 WW2      C6     C1     H1A     109.470    3.000
 WW2      C6     C1     H1      109.470    3.000
 WW2      C6     C1     C2      111.000    3.000
 WW2      H1A    C1     H1      107.900    3.000
 WW2      H1A    C1     C2      109.470    3.000
 WW2      H1     C1     C2      109.470    3.000
 WW2      C6     C5     H5      109.470    3.000
 WW2      C6     C5     H5A     109.470    3.000
 WW2      C6     C5     C4      111.000    3.000
 WW2      H5     C5     H5A     107.900    3.000
 WW2      H5     C5     C4      109.470    3.000
 WW2      H5A    C5     C4      109.470    3.000
 WW2      C5     C4     H4      109.470    3.000
 WW2      C5     C4     H4A     109.470    3.000
 WW2      C5     C4     C3      111.000    3.000
 WW2      H4     C4     H4A     107.900    3.000
 WW2      H4     C4     C3      109.470    3.000
 WW2      H4A    C4     C3      109.470    3.000
 WW2      C4     C3     H3      109.470    3.000
 WW2      C4     C3     H3A     109.470    3.000
 WW2      C4     C3     C2      111.000    3.000
 WW2      H3     C3     H3A     107.900    3.000
 WW2      H3     C3     C2      109.470    3.000
 WW2      H3A    C3     C2      109.470    3.000
 WW2      C3     C2     H2A     109.470    3.000
 WW2      C3     C2     H2      109.470    3.000
 WW2      C3     C2     C1      111.000    3.000
 WW2      H2A    C2     H2      107.900    3.000
 WW2      H2A    C2     C1      109.470    3.000
 WW2      H2     C2     C1      109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 WW2      var_1    O1     P1     C7     H7        60.026   20.000   1
 WW2      var_2    O1     P1     O2     C6        59.967   20.000   1
 WW2      var_3    P1     O2     C6     C5       120.005   20.000   1
 WW2      var_4    O2     C6     C1     C2       180.000   20.000   3
 WW2      var_5    C6     C1     C2     C3        60.000   20.000   3
 WW2      var_6    O2     C6     C5     C4       180.000   20.000   3
 WW2      var_7    C6     C5     C4     C3       -60.000   20.000   3
 WW2      var_8    C5     C4     C3     C2        60.000   20.000   3
 WW2      var_9    C4     C3     C2     C1       -60.000   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 WW2      chir_01  C6     C1     O2     C5        negativ
# ------------------------------------------------------