File: ZZ5.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (335 lines) | stat: -rw-r--r-- 14,988 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
ZZ5      ZZ5 '3,6-DIAMINO-5-CYANO-4-(4-ETHOXYPHENY' non-polymer        40  25 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_ZZ5
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 ZZ5           O21    O    O         0.000      0.000    0.000    0.000
 ZZ5           C15    C    C         0.000     -0.071    1.206    0.151
 ZZ5           N20    N    NH2       0.000      1.054    1.937    0.281
 ZZ5           H202   H    H         0.000      1.962    1.487    0.253
 ZZ5           H201   H    H         0.000      1.001    2.941    0.407
 ZZ5           C9     C    CR5       0.000     -1.334    1.842    0.192
 ZZ5           S7     S    S2        0.000     -1.573    3.564    0.405
 ZZ5           C4     C    CR5       0.000     -2.523    1.197    0.072
 ZZ5           N10    N    NH2       0.000     -2.623   -0.176   -0.106
 ZZ5           H102   H    H         0.000     -3.532   -0.622   -0.192
 ZZ5           H101   H    H         0.000     -1.788   -0.753   -0.154
 ZZ5           C1     C    CR56      0.000     -3.681    2.068    0.147
 ZZ5           C3     C    CR56      0.000     -3.326    3.409    0.329
 ZZ5           N8     N    NRD6      0.000     -4.269    4.354    0.420
 ZZ5           C13    C    CR6       0.000     -5.555    4.086    0.345
 ZZ5           N18    N    NH2       0.000     -6.474    5.114    0.448
 ZZ5           H182   H    H         0.000     -6.164    6.071    0.580
 ZZ5           H181   H    H         0.000     -7.470    4.922    0.393
 ZZ5           C2     C    CR6       0.000     -5.062    1.733    0.066
 ZZ5           C6     C    CR6       0.000     -6.007    2.765    0.162
 ZZ5           C14    C    CSP       0.000     -7.409    2.478    0.081
 ZZ5           N19    N    NS        0.000     -8.519    2.250    0.017
 ZZ5           C5     C    CR6       0.000     -5.489    0.330   -0.120
 ZZ5           C11    C    CR16      0.000     -5.232   -0.618    0.873
 ZZ5           H11    H    H         0.000     -4.720   -0.327    1.781
 ZZ5           C16    C    CR16      0.000     -5.632   -1.924    0.695
 ZZ5           H16    H    H         0.000     -5.435   -2.660    1.465
 ZZ5           C22    C    CR6       0.000     -6.288   -2.299   -0.470
 ZZ5           C17    C    CR16      0.000     -6.540   -1.361   -1.464
 ZZ5           H17    H    H         0.000     -7.048   -1.659   -2.373
 ZZ5           C12    C    CR16      0.000     -6.144   -0.052   -1.293
 ZZ5           H12    H    H         0.000     -6.340    0.680   -2.068
 ZZ5           O23    O    O2        0.000     -6.681   -3.587   -0.641
 ZZ5           C24    C    CH2       0.000     -6.391   -4.501    0.419
 ZZ5           H241   H    H         0.000     -6.881   -4.163    1.334
 ZZ5           H242   H    H         0.000     -5.312   -4.541    0.579
 ZZ5           C25    C    CH3       0.000     -6.905   -5.893    0.048
 ZZ5           H253   H    H         0.000     -6.430   -6.224   -0.841
 ZZ5           H252   H    H         0.000     -6.691   -6.573    0.833
 ZZ5           H251   H    H         0.000     -7.953   -5.857   -0.109
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 ZZ5      O21    n/a    C15    START
 ZZ5      C15    O21    C9     .
 ZZ5      N20    C15    H201   .
 ZZ5      H202   N20    .      .
 ZZ5      H201   N20    .      .
 ZZ5      C9     C15    C4     .
 ZZ5      S7     C9     .      .
 ZZ5      C4     C9     C1     .
 ZZ5      N10    C4     H101   .
 ZZ5      H102   N10    .      .
 ZZ5      H101   N10    .      .
 ZZ5      C1     C4     C2     .
 ZZ5      C3     C1     N8     .
 ZZ5      N8     C3     C13    .
 ZZ5      C13    N8     N18    .
 ZZ5      N18    C13    H181   .
 ZZ5      H182   N18    .      .
 ZZ5      H181   N18    .      .
 ZZ5      C2     C1     C5     .
 ZZ5      C6     C2     C14    .
 ZZ5      C14    C6     N19    .
 ZZ5      N19    C14    .      .
 ZZ5      C5     C2     C11    .
 ZZ5      C11    C5     C16    .
 ZZ5      H11    C11    .      .
 ZZ5      C16    C11    C22    .
 ZZ5      H16    C16    .      .
 ZZ5      C22    C16    O23    .
 ZZ5      C17    C22    C12    .
 ZZ5      H17    C17    .      .
 ZZ5      C12    C17    H12    .
 ZZ5      H12    C12    .      .
 ZZ5      O23    C22    C24    .
 ZZ5      C24    O23    C25    .
 ZZ5      H241   C24    .      .
 ZZ5      H242   C24    .      .
 ZZ5      C25    C24    H251   .
 ZZ5      H253   C25    .      .
 ZZ5      H252   C25    .      .
 ZZ5      H251   C25    .      END
 ZZ5      C6     C13    .    ADD
 ZZ5      C3     S7     .    ADD
 ZZ5      C5     C12    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 ZZ5      N19    C14       triple      1.158    0.020
 ZZ5      C14    C6        single      1.285    0.020
 ZZ5      C6     C13       single      1.487    0.020
 ZZ5      C6     C2        double      1.487    0.020
 ZZ5      N18    C13       single      1.355    0.020
 ZZ5      C13    N8        double      1.350    0.020
 ZZ5      N8     C3        single      1.355    0.020
 ZZ5      C3     S7        single      1.695    0.020
 ZZ5      C3     C1        double      1.490    0.020
 ZZ5      S7     C9        single      1.745    0.020
 ZZ5      C9     C15       single      1.490    0.020
 ZZ5      C4     C9        double      1.490    0.020
 ZZ5      N20    C15       single      1.332    0.020
 ZZ5      C15    O21       double      1.220    0.020
 ZZ5      N10    C4        single      1.355    0.020
 ZZ5      C1     C4        single      1.490    0.020
 ZZ5      C2     C1        single      1.490    0.020
 ZZ5      C5     C2        single      1.487    0.020
 ZZ5      C5     C12       single      1.390    0.020
 ZZ5      C11    C5        double      1.390    0.020
 ZZ5      C12    C17       double      1.390    0.020
 ZZ5      C17    C22       single      1.390    0.020
 ZZ5      C16    C11       single      1.390    0.020
 ZZ5      C22    C16       double      1.390    0.020
 ZZ5      O23    C22       single      1.370    0.020
 ZZ5      C24    O23       single      1.426    0.020
 ZZ5      C25    C24       single      1.513    0.020
 ZZ5      H181   N18       single      1.010    0.020
 ZZ5      H182   N18       single      1.010    0.020
 ZZ5      H201   N20       single      1.010    0.020
 ZZ5      H202   N20       single      1.010    0.020
 ZZ5      H101   N10       single      1.010    0.020
 ZZ5      H102   N10       single      1.010    0.020
 ZZ5      H12    C12       single      1.083    0.020
 ZZ5      H11    C11       single      1.083    0.020
 ZZ5      H17    C17       single      1.083    0.020
 ZZ5      H16    C16       single      1.083    0.020
 ZZ5      H241   C24       single      1.092    0.020
 ZZ5      H242   C24       single      1.092    0.020
 ZZ5      H251   C25       single      1.059    0.020
 ZZ5      H252   C25       single      1.059    0.020
 ZZ5      H253   C25       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 ZZ5      O21    C15    N20     123.000    3.000
 ZZ5      O21    C15    C9      120.500    3.000
 ZZ5      N20    C15    C9      120.000    3.000
 ZZ5      C15    N20    H202    120.000    3.000
 ZZ5      C15    N20    H201    120.000    3.000
 ZZ5      H202   N20    H201    120.000    3.000
 ZZ5      C15    C9     S7      108.000    3.000
 ZZ5      C15    C9     C4      117.000    3.000
 ZZ5      S7     C9     C4      108.000    3.000
 ZZ5      C9     S7     C3       92.542    3.000
 ZZ5      C9     C4     N10     108.000    3.000
 ZZ5      C9     C4     C1      108.000    3.000
 ZZ5      N10    C4     C1      108.000    3.000
 ZZ5      C4     N10    H102    120.000    3.000
 ZZ5      C4     N10    H101    120.000    3.000
 ZZ5      H102   N10    H101    120.000    3.000
 ZZ5      C4     C1     C3      108.000    3.000
 ZZ5      C4     C1     C2      132.000    3.000
 ZZ5      C3     C1     C2      120.000    3.000
 ZZ5      C1     C3     N8      120.000    3.000
 ZZ5      C1     C3     S7      120.000    3.000
 ZZ5      N8     C3     S7      120.000    3.000
 ZZ5      C3     N8     C13     120.000    3.000
 ZZ5      N8     C13    N18     120.000    3.000
 ZZ5      N8     C13    C6      120.000    3.000
 ZZ5      N18    C13    C6      120.000    3.000
 ZZ5      C13    N18    H182    120.000    3.000
 ZZ5      C13    N18    H181    120.000    3.000
 ZZ5      H182   N18    H181    120.000    3.000
 ZZ5      C1     C2     C6      120.000    3.000
 ZZ5      C1     C2     C5      120.000    3.000
 ZZ5      C6     C2     C5      120.000    3.000
 ZZ5      C2     C6     C14     120.000    3.000
 ZZ5      C2     C6     C13     120.000    3.000
 ZZ5      C14    C6     C13     120.000    3.000
 ZZ5      C6     C14    N19     180.000    3.000
 ZZ5      C2     C5     C11     120.000    3.000
 ZZ5      C2     C5     C12     120.000    3.000
 ZZ5      C11    C5     C12     120.000    3.000
 ZZ5      C5     C11    H11     120.000    3.000
 ZZ5      C5     C11    C16     120.000    3.000
 ZZ5      H11    C11    C16     120.000    3.000
 ZZ5      C11    C16    H16     120.000    3.000
 ZZ5      C11    C16    C22     120.000    3.000
 ZZ5      H16    C16    C22     120.000    3.000
 ZZ5      C16    C22    C17     120.000    3.000
 ZZ5      C16    C22    O23     120.000    3.000
 ZZ5      C17    C22    O23     120.000    3.000
 ZZ5      C22    C17    H17     120.000    3.000
 ZZ5      C22    C17    C12     120.000    3.000
 ZZ5      H17    C17    C12     120.000    3.000
 ZZ5      C17    C12    H12     120.000    3.000
 ZZ5      C17    C12    C5      120.000    3.000
 ZZ5      H12    C12    C5      120.000    3.000
 ZZ5      C22    O23    C24     120.000    3.000
 ZZ5      O23    C24    H241    109.470    3.000
 ZZ5      O23    C24    H242    109.470    3.000
 ZZ5      O23    C24    C25     109.470    3.000
 ZZ5      H241   C24    H242    107.900    3.000
 ZZ5      H241   C24    C25     109.470    3.000
 ZZ5      H242   C24    C25     109.470    3.000
 ZZ5      C24    C25    H253    109.470    3.000
 ZZ5      C24    C25    H252    109.470    3.000
 ZZ5      C24    C25    H251    109.470    3.000
 ZZ5      H253   C25    H252    109.470    3.000
 ZZ5      H253   C25    H251    109.470    3.000
 ZZ5      H252   C25    H251    109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 ZZ5      CONST_1  O21    C15    N20    H201     180.000    0.000   0
 ZZ5      var_1    O21    C15    C9     C4         0.034   20.000   1
 ZZ5      CONST_2  C15    C9     S7     C3       180.000    0.000   0
 ZZ5      CONST_3  C15    C9     C4     C1       180.000    0.000   0
 ZZ5      CONST_4  C9     C4     N10    H101      -0.002    0.000   0
 ZZ5      CONST_5  C9     C4     C1     C2       180.000    0.000   0
 ZZ5      CONST_6  C4     C1     C3     N8       180.000    0.000   0
 ZZ5      CONST_7  C1     C3     S7     C9         0.000    0.000   0
 ZZ5      CONST_8  C1     C3     N8     C13        0.000    0.000   0
 ZZ5      CONST_9  C3     N8     C13    N18      180.000    0.000   0
 ZZ5      CONST_10 N8     C13    N18    H181    -179.929    0.000   0
 ZZ5      CONST_11 C4     C1     C2     C5         0.000    0.000   0
 ZZ5      CONST_12 C1     C2     C6     C14      180.000    0.000   0
 ZZ5      CONST_13 C2     C6     C13    N8         0.000    0.000   0
 ZZ5      var_2    C2     C6     C14    N19       58.653   20.000   1
 ZZ5      CONST_14 C1     C2     C5     C11        0.000    0.000   0
 ZZ5      CONST_15 C2     C5     C12    C17      180.000    0.000   0
 ZZ5      CONST_16 C2     C5     C11    C16      180.000    0.000   0
 ZZ5      CONST_17 C5     C11    C16    C22        0.000    0.000   0
 ZZ5      CONST_18 C11    C16    C22    O23      180.000    0.000   0
 ZZ5      CONST_19 C16    C22    C17    C12        0.000    0.000   0
 ZZ5      CONST_20 C22    C17    C12    C5         0.000    0.000   0
 ZZ5      var_3    C16    C22    O23    C24        0.193   20.000   1
 ZZ5      var_4    C22    O23    C24    C25     -179.974   20.000   1
 ZZ5      var_5    O23    C24    C25    H251     -59.972   20.000   3
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 ZZ5      plan-1    C6        0.020
 ZZ5      plan-1    C14       0.020
 ZZ5      plan-1    C13       0.020
 ZZ5      plan-1    C2        0.020
 ZZ5      plan-1    N8        0.020
 ZZ5      plan-1    N18       0.020
 ZZ5      plan-1    C3        0.020
 ZZ5      plan-1    S7        0.020
 ZZ5      plan-1    C1        0.020
 ZZ5      plan-1    C9        0.020
 ZZ5      plan-1    C4        0.020
 ZZ5      plan-1    C15       0.020
 ZZ5      plan-1    N10       0.020
 ZZ5      plan-1    C5        0.020
 ZZ5      plan-1    H182      0.020
 ZZ5      plan-1    H181      0.020
 ZZ5      plan-1    H102      0.020
 ZZ5      plan-1    H101      0.020
 ZZ5      plan-2    N18       0.020
 ZZ5      plan-2    C13       0.020
 ZZ5      plan-2    H181      0.020
 ZZ5      plan-2    H182      0.020
 ZZ5      plan-3    C15       0.020
 ZZ5      plan-3    C9        0.020
 ZZ5      plan-3    N20       0.020
 ZZ5      plan-3    O21       0.020
 ZZ5      plan-3    H202      0.020
 ZZ5      plan-3    H201      0.020
 ZZ5      plan-4    N20       0.020
 ZZ5      plan-4    C15       0.020
 ZZ5      plan-4    H201      0.020
 ZZ5      plan-4    H202      0.020
 ZZ5      plan-5    N10       0.020
 ZZ5      plan-5    C4        0.020
 ZZ5      plan-5    H101      0.020
 ZZ5      plan-5    H102      0.020
 ZZ5      plan-6    C5        0.020
 ZZ5      plan-6    C2        0.020
 ZZ5      plan-6    C12       0.020
 ZZ5      plan-6    C11       0.020
 ZZ5      plan-6    C17       0.020
 ZZ5      plan-6    C16       0.020
 ZZ5      plan-6    C22       0.020
 ZZ5      plan-6    H12       0.020
 ZZ5      plan-6    H17       0.020
 ZZ5      plan-6    H11       0.020
 ZZ5      plan-6    H16       0.020
 ZZ5      plan-6    O23       0.020
# ------------------------------------------------------