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Source: resfinder
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Étienne Mollier <emollier@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-python,
pybuild-plugin-pyproject,
python3,
python3-cgelib,
python3-pdm
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/resfinder
Vcs-Git: https://salsa.debian.org/med-team/resfinder.git
Homepage: https://bitbucket.org/genomicepidemiology/resfinder
Rules-Requires-Root: no
Package: resfinder
Architecture: all
Depends: ${python3:Depends},
${misc:Depends},
resfinder-db,
python3-cgecore,
python3-tabulate,
ncbi-blast+-legacy,
kma,
python3-git,
python3-dateutil,
python3-cgelib
Description: identify acquired antimicrobial resistance genes
ResFinder identifies acquired antimicrobial resistance genes in total or
partial sequenced isolates of bacteria.
.
ResFinder that uses BLAST for identification of acquired antimicrobial
resistance genes in whole-genome data. As input, the method can use both
pre-assembled, complete or partial genomes, and short sequence reads
from four different sequencing platforms. The method was evaluated on
1862 GenBank files containing 1411 different resistance genes, as well
as on 23 de-novo-sequenced isolates.
Package: resfinder-example
Architecture: all
Depends: ${misc:Depends},
Recommends: resfinder
Multi-Arch: foreign
Description: identify acquired antimicrobial resistance genes (example data)
ResFinder identifies acquired antimicrobial resistance genes in total or
partial sequenced isolates of bacteria.
.
ResFinder that uses BLAST for identification of acquired antimicrobial
resistance genes in whole-genome data. As input, the method can use both
pre-assembled, complete or partial genomes, and short sequence reads
from four different sequencing platforms. The method was evaluated on
1862 GenBank files containing 1411 different resistance genes, as well
as on 23 de-novo-sequenced isolates.
.
This package contains example data to test resfinder.
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