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# TORQUE as a backend for Cromwell on Computerome
# Here is where you can define the backend providers that Cromwell understands.
# The default is a local provider.
# To add additional backend providers, you should copy paste additional backends
# of interest that you can find in the cromwell.example.backends folder
# folder at https://www.github.com/broadinstitute/cromwell
# Other backend providers include SGE, SLURM, Docker, udocker, Singularity. etc.
# Don't forget you will need to customize them for your particular use case.
backend {
# Override the default backend.
default = TORQUE
# The list of providers.
providers {
TORQUE {
# The actor that runs the backend.
actor-factory = "cromwell.backend.impl.sfs.config.ConfigBackendLifecycleActorFactory"
# The backend custom configuration.
config {
# Number of concurrent jobs allowed
concurrent-job-limit = 500
# The list of possible runtime custom attributes.
runtime-attributes = """
String walltime = "1:00:00"
Int cpu = 1
Float memory_mb = 2048.0
String queue = "cge"
"""
submit = "qsub -W group_list=${queue} -A ${queue} -N ${job_name} -lwalltime=${walltime},nodes=1:ppn=${cpu},mem=${ceil(memory_mb)}mb -d ${cwd} -o ${out} -e ${err} ${script}"
kill = "qdel ${job_id}"
check-alive = "qstat ${job_id}"
job-id-regex = "(\\d+)"
}
}
}
}
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