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Source: rna-star
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>,
Andreas Tille <tille@debian.org>,
Sascha Steinbiss <satta@debian.org>,
Nilesh Patra <nilesh@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
libhts-dev,
vim-common,
xxd,
zlib1g-dev,
libsimde-dev
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/rna-star
Vcs-Git: https://salsa.debian.org/med-team/rna-star.git
Homepage: https://github.com/alexdobin/STAR/
Rules-Requires-Root: no
Package: rna-star
Architecture: amd64 arm64 ppc64el mips64el
Depends: ${misc:Depends},
${shlibs:Depends}
Built-Using: ${simde:Built-Using}
Description: ultrafast universal RNA-seq aligner
Spliced Transcripts Alignment to a Reference (STAR) software based on a
previously undescribed RNA-seq alignment algorithm that uses sequential
maximum mappable seed search in uncompressed suffix arrays followed by
seed clustering and stitching procedure. STAR outperforms other aligners
by a factor of >50 in mapping speed, aligning to the human genome 550
million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
while at the same time improving alignment sensitivity and precision. In
addition to unbiased de novo detection of canonical junctions, STAR can
discover non-canonical splices and chimeric (fusion) transcripts, and is
also capable of mapping full-length RNA sequences. Using Roche 454
sequencing of reverse transcription polymerase chain reaction amplicons,
the authors experimentally validated 1960 novel intergenic splice
junctions with an 80-90% success rate, corroborating the high precision
of the STAR mapping strategy.
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