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#!/usr/bin/make -f
# -*- makefile -*-
# These are used for cross-compiling and for saving the configure script
# from having to guess our platform (since we know it already)
DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
CFLAGS = -Wall -g
ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
CFLAGS += -O0
else
CFLAGS += -O2
endif
config.status: configure
dh_testdir
ifneq "$(wildcard /usr/share/misc/config.sub)" ""
cp -f /usr/share/misc/config.sub config.sub
endif
ifneq "$(wildcard /usr/share/misc/config.guess)" ""
cp -f /usr/share/misc/config.guess config.guess
endif
./configure --host=$(DEB_HOST_GNU_TYPE)\
--build=$(DEB_BUILD_GNU_TYPE)\
--prefix=/usr\
--mandir=\$${prefix}/share/man\
CFLAGS="$(CFLAGS)"\
LDFLAGS="-Wl,-z,defs"
build: build-stamp
build-stamp: config.status
dh_testdir
$(MAKE)
touch $@
clean: config.status
dh_testdir
dh_testroot
rm -f build-stamp
$(MAKE) distclean
dh_clean config.sub config.guess
test: build
src/RNAhybrid -s 3utr_worm -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta
src/RNAcalibrate -d examples/3UTR_worm.freq -k 50 -l 50,30 -q examples/cel-let-7.fasta
src/RNAhybrid -d 1.9,0.28 -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta
src/RNAhybrid -f 2,7 -d 1.9,0.28 -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta
src/RNAcalibrate -f 2,7 -d examples/3UTR_worm.freq -k 50 -l 50,30 -q examples/cel-let-7.fasta
src/RNAhybrid -s 3utr_worm -t examples/cbr-hbl-1.fasta -q examples/cel-let-7.fasta
-src/RNAeffective -k 30 -s -t examples/hbl-1.fasta -q examples/cel-let-7.fasta
install: build test
dh_testdir
dh_testroot
dh_clean -k
dh_installdirs
$(MAKE) DESTDIR=$(CURDIR)/debian/rnahybrid install
binary-indep: build install
binary-arch: build install
dh_testdir
dh_testroot
dh_installchangelogs ChangeLog
dh_installdocs README
dh_installexamples examples/*
dh_link
dh_strip
dh_compress
dh_fixperms
dh_installdeb
dh_shlibdeps
dh_gencontrol
dh_md5sums
dh_builddeb
binary: binary-indep binary-arch
.PHONY: build clean binary-indep binary-arch binary install
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