1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63
|
/* RogueNaRok is an algorithm for the identification of rogue taxa in a set of phylogenetic trees.
*
* Moreover, the program collection comes with efficient implementations of
* * the unrooted leaf stability by Thorley and Wilkinson
* * the taxonomic instability index by Maddinson and Maddison
* * a maximum agreement subtree implementation (MAST) for unrooted trees
* * a tool for pruning taxa from a tree collection.
*
* Copyright October 2011 by Andre J. Aberer
*
* Tree I/O and parallel framework are derived from RAxML by Alexandros Stamatakis.
*
* This program is free software; you may redistribute it and/or
* modify its under the terms of the GNU General Public License as
* published by the Free Software Foundation; either version 2 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* General Public License for more details.
*
* For any other inquiries send an Email to Andre J. Aberer
* andre.aberer at googlemail.com
*
* When publishing work that is based on the results from RogueNaRok, please cite:
* Andre J. Aberer, Denis Krompaß, Alexandros Stamatakis. RogueNaRok: an Efficient and Exact Algorithm for Rogue Taxon Identification. (unpublished) 2011.
*
*/
#ifndef ARRAY_H
#define ARRAY_H
#include <stdlib.h>
typedef struct
{
void *arrayTable;
void *commonAttributes;
unsigned int length;
} Array;
#define CLONE_ARRAY_FLAT(FUNCNAME, TYPE, TYPEATTR) \
Array *FUNCNAME (const Array *array) \
{ \
Array *result = CALLOC(1,sizeof(Array)); \
result->length = array->length; \
result->arrayTable = CALLOC(result->length, sizeof(TYPE)); \
memcpy(result->arrayTable, array->arrayTable, array->length * sizeof(TYPE) ); \
\
if( array->commonAttributes ) \
{ \
result->commonAttributes = CALLOC(1 , sizeof(TYPEATTR)); \
memcpy(result->commonAttributes, array->commonAttributes, sizeof(TYPEATTR) ) ; \
} \
return result; \
}
void freeArray(Array *array);
#endif
|