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|
name: Build, install, and test wheels.
on:
workflow_call:
inputs:
python-version:
required: true
type: string
r-version:
required: true
type: string
os:
required: true
type: string
jobs:
test:
runs-on: ${{ inputs.os }}
continue-on-error: ${{ startsWith(inputs.os, 'windows') && inputs.r-version == 'release' }}
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ inputs.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ inputs.python-version }}
- name: Set up R ${{ inputs.r-version }}
uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ inputs.r-version }}
use-public-rspm: true
- name: Set virtualenv activation command (Windows)
if: startsWith(inputs.os, 'windows')
shell: bash
run: |
echo "VENV_ACTIVATE=pyenv_base/Scripts/activate" >> $GITHUB_ENV
echo "R_LIBRARY=''" >> $GITHUB_ENV
echo "R_HOME=$(R RHOME)" >> $GITHUB_ENV
- name: Set virtualenv activation command (POSIX)
if: "!startsWith(inputs.os, 'windows')"
run: |
echo "VENV_ACTIVATE=source pyenv_base/bin/activate" >> $GITHUB_ENV
echo "R_LIBRARY=export LD_LIBRARY_PATH=$(python -m rpy2.situation LD_LIBRARY_PATH)" >> $GITHUB_ENV
- name: Create base virtualenv
run: |
python -m venv pyenv_base
${{ env.VENV_ACTIVATE }}
python -m pip install -U pip wheel
- uses: actions/download-artifact@v4.1.7
with:
pattern: rpy2-rinterface-${{ inputs.os }}-py${{ inputs.python-version }}-r${{ inputs.r-version }}
path: rpy2-rinterface/dist/
- uses: actions/download-artifact@v4.1.7
with:
pattern: rpy2-robjects-${{ inputs.os }}
path: rpy2-robjects/dist/
- name: Built package path.
shell: bash
run: |
ls rpy2-rinterface/dist/rpy2-rinterface-${{ inputs.os }}-py${{ inputs.python-version }}-r${{ inputs.r-version }}/*.whl
ls rpy2-rinterface/dist/
echo "RPY2_RINTERFACE_WHL_DIST=$(ls -1 rpy2-rinterface/dist/rpy2-rinterface-${{ inputs.os }}-py${{ inputs.python-version }}-r${{ inputs.r-version }}/*.whl | tail -n 1)" >> $GITHUB_ENV
echo "RPY2_ROBJECTS_WHL_DIST=$(ls -1 rpy2-robjects/dist/rpy2-robjects-${{ inputs.os }}/*.whl | tail -n 1)" >> $GITHUB_ENV
- name: Install package
run: |
${{ env.VENV_ACTIVATE }}
pip install ${{ env.RPY2_RINTERFACE_WHL_DIST }}
pip install --pre ${{ env.RPY2_ROBJECTS_WHL_DIST }}
python -m rpy2.situation
- name: Set R_LIBRARY (Windows)
if: startsWith(inputs.os, 'windows')
run: |
${{ env.VENV_ACTIVATE }}
echo "R_LIBRARY=''" >> $GITHUB_ENV
- name: Set R_LIBRARY (POSIX)
if: "!startsWith(inputs.os, 'windows')"
run: |
${{ env.VENV_ACTIVATE }}
echo "R_LIBRARY=export LD_LIBRARY_PATH=$(python -m rpy2.situation LD_LIBRARY_PATH):${LD_LIBRARY_PATH}" >> $GITHUB_ENV
- name: Test with minimal dependencies
run: |
${{ env.VENV_ACTIVATE }}
echo "With requirements for rpy2-rinterface."
python3 -m pip install --pre ${{ env.RPY2_RINTERFACE_WHL_DIST }}'[test]'
${{ env.R_LIBRARY }}
python -c 'from rpy2.rinterface_lib import openrlib; print(openrlib.cffi_mode)'
bash -e ./scripts/run_test_rinterface_min_deps.sh
echo "With dev for rpy2-robjects."
python3 -m pip install --pre ${{ env.RPY2_ROBJECTS_WHL_DIST }}'[test_minimal]'
bash -e ./scripts/run_test_robjects_min_deps.sh
- name: Test with numpy
run: |
${{ env.VENV_ACTIVATE }}
python -m pip install --pre ${{ env.RPY2_ROBJECTS_WHL_DIST}}'[numpy]'
${{ env.R_LIBRARY }}
bash -e ./scripts/run_test_numpy.sh
- name: Test with pandas
run: |
${{ env.VENV_ACTIVATE }}
python -m pip install --pre ${{ env.RPY2_ROBJECTS_WHL_DIST}}'[pandas]'
${{ env.R_LIBRARY }}
bash -e ./scripts/run_test_pandas.sh
- name: Test with ipython
run: |
${{ env.VENV_ACTIVATE }}
python -m pip install --pre ${{ env.RPY2_ROBJECTS_WHL_DIST}}'[test]'
${{ env.R_LIBRARY }}
bash -e ./scripts/run_test_ipython.sh
- name: Set RSPM
if: startsWith(inputs.os, 'ubuntu')
run: |
echo "RSPM=\"https://packagemanager.rstudio.com/cran/__linux__/$(lsb_release -sc)/latest\"" >> $GITHUB_ENV
- name: Install R dependencies
run: |
install.packages(c("ggplot2", "dplyr", "tidyr", "dbplyr", "lazyeval", "rlang"))
shell: Rscript {0}
- name: Test with R deps
if: "!startsWith(inputs.os, 'windows')"
run: |
${{ env.VENV_ACTIVATE }}
${{ env.R_LIBRARY }}
bash -e ./scripts/run_test_rdeps.sh
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v4.6.0
if: inputs.os == 'ubuntu-22.04' && inputs.python-version == '3.10' && inputs.r-version == 'release'
env:
OS: ${{ runner.os }}
PYTHON: ${{ inputs.python-version }}
with:
token: ${{ secrets.CODECOV_TOKEN }}
env_vars: OS,PYTHON
|
