1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
|
Version 0.984 (2013-08-07)
===========================
* Fix tempdir calls for wider compatibility.
* Add NOMATEPAIR classification when --single_ok is not selected, so that every input line gets an output line.
Version 0.983 (2012-09-05)
===========================
* add options -x and -y to reverse-complement reads 1 and 2, respectively
* fixed completely broken fallback to single-ended classification, and miscounting of NOHIT cases
* fix idList command-line parsing bug
Version 0.982 (2012-07-02)
===========================
* getopts bug fix
* try to fix issues with TOOMANYHITS cases
Version 0.981 (2012-05-08)
===========================
* change all references to "/usr/bin/perl" to "/usr/bin/env perl" for wider compatibility
Version 0.98 (2012-05-07)
==========================
* insured global alignment with iddef 2, i.e. ignoring terminal gaps in computing percent identity, which was the intention all along
* Fix intermittent hanging due to squirrely interaction of usearch with named pipes
Version 0.96 (2012-03-01)
==========================
* Make fallback optional. Store FASTA indexes as DBM. Add fastaidx tool
* Combined pair + single script with fallback
Version 0.94 (2012-01-12)
==========================
* add tempdir option
* add idList option
* add id regex option
Version 0.93 (2012-01-09)
=========================
* Ditch Bio::Index::Fasta
Version 0.92 (2011-12-28)
=========================
* Prep Qiime integration
|
