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#
# = bio/appl/probcons.rb - ProbCons application wrapper class
#
# Copyright:: Copyright (C) 2006-2007
# Jeffrey Blakeslee and John Conery University of Oregon <jeffb@uoregon.edu>
# Naohisa Goto <ng@bioruby.org>
# License:: The Ruby License
#
# $Id: probcons.rb,v 1.1 2007/07/16 12:25:50 ngoto Exp $
#
# Bio::Probcons is a wrapper class to execute ProbCons
# (Probabilistic Consistency-based Multiple Alignment
# of Amino Acid Sequences).
#
# == References
#
# * http://probcons.stanford.edu/
# * Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S.
# ProbCons: Probabilistic Consistency-based Multiple Sequence Alignment.
# Genome Research 15: 330-340, 2005.
#
module Bio
# Bio::Probcons is a wrapper class to execute PROBCONS
# (Probabilistic Consistency-based Multiple Alignment
# of Amino Acid Sequences).
#
# Please refer documents in bio/apple/probcons.rb for references.
class Probcons < Bio::Alignment::FactoryTemplate::FileInStdoutOut
# default program name
DEFAULT_PROGRAM = 'probcons'.freeze
# default report parser
DEFAULT_PARSER = Bio::Alignment::MultiFastaFormat
end #class Probcons
end #module Bio
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