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#
# = sample/demo_aaindex.rb - demonstration of Bio::AAindex1 and AAindex2
#
# Copyright:: Copyright (C) 2001
# KAWASHIMA Shuichi <s@bioruby.org>
# Copyright:: Copyright (C) 2006
# Mitsuteru C. Nakao <n@bioruby.org>
# License:: The Ruby License
#
#
# == Description
#
# Demonstration of Bio::AAindex1 and Bio::AAindex2.
#
# == Requirements
#
# Internet connection and/or OBDA (Open Bio Database Access) configuration.
#
# == Usage
#
# Simply run this script.
#
# $ ruby demo_aaindex.rb
#
# == Development information
#
# The code was moved from lib/bio/db/aaindex.rb.
#
require 'bio'
#if __FILE__ == $0
puts "### AAindex1 (PRAM900102)"
aax1 = Bio::AAindex1.new(Bio::Fetch.query('aaindex', 'PRAM900102', 'raw'))
p aax1.entry_id
p aax1.definition
p aax1.dblinks
p aax1.author
p aax1.title
p aax1.journal
p aax1.comment
p aax1.correlation_coefficient
p aax1.index
p aax1
puts "### AAindex2 (DAYM780301)"
aax2 = Bio::AAindex2.new(Bio::Fetch.query('aaindex', 'DAYM780301', 'raw'))
p aax2.entry_id
p aax2.definition
p aax2.dblinks
p aax2.author
p aax2.title
p aax2.journal
p aax1.comment
p aax2.rows
p aax2.cols
p aax2.matrix
p aax2.matrix[2,2]
p aax2.matrix[2,3]
p aax2.matrix[4,3]
p aax2.matrix.determinant
p aax2.matrix.rank
p aax2.matrix.transpose
p aax2
#end
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