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#
# = sample/demo_fasta_remote.rb - demonstration of FASTA execution using GenomeNet web service
#
# Copyright:: Copyright (C) 2001, 2002 Toshiaki Katayama <k@bioruby.org>
# License:: The Ruby License
#
# == Description
#
# Demonstration of Bio::Fasta.remote, wrapper class for FASTA execution using
# GenomeNet fasta.genome.jp web service.
#
# == Requirements
#
# * Internet connection
#
# == Usage
#
# Specify a files containing a nucleic acid sequence.
# The file format should be the fasta format.
#
# $ ruby demo_fasta_remote.rb file.fst
#
# Example usage using test data:
#
# $ ruby -Ilib sample/demo_fasta_remote.rb test/data/blast/b0002.faa
#
# Note that it may take very long time. Please wait for 3 to 5 minutes.
#
# == Development information
#
# The code was moved from lib/bio/appl/fasta.rb.
#
require 'bio'
#if __FILE__ == $0
begin
require 'pp'
alias p pp
rescue
end
# serv = Bio::Fasta.local('fasta34', 'hoge.nuc')
# serv = Bio::Fasta.local('fasta34', 'hoge.pep')
# serv = Bio::Fasta.local('ssearch34', 'hoge.pep')
# This may take 3 minutes or so.
serv = Bio::Fasta.remote('fasta', 'genes')
p serv.query(ARGF.read)
#end
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