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#!/usr/bin/env ruby
#
# genes2nuc.rb - convert KEGG/GENES entry into FASTA format (nuc)
#
# Copyright (C) 2001 KATAYAMA Toshiaki <k@bioruby.org>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# $Id: genes2nuc.rb,v 0.4 2002/06/23 20:21:56 k Exp $
#
require 'bio/db/kegg/genes'
require 'bio/extend'
include Bio
while gets(KEGG::GENES::DELIMITER)
genes = KEGG::GENES.new($_)
next if genes.nalen == 0
puts ">#{genes.entry_id} #{genes.definition}"
puts genes.naseq.fold(60+12, 12)
end
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